BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136506.7 - phase: 0 /pseudo
(1021 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10990 putative retrotransposon polyprotein 368 e-101
At2g23330 putative retroelement pol polyprotein 345 8e-95
At2g16000 putative retroelement pol polyprotein 344 1e-94
At2g16670 putative retroelement pol polyprotein 342 8e-94
At4g23160 putative protein 340 3e-93
At2g13940 putative retroelement pol polyprotein 337 3e-92
At4g22040 LTR retrotransposon like protein 335 8e-92
At1g57640 334 1e-91
At4g17450 retrotransposon like protein 332 9e-91
At1g70010 hypothetical protein 332 9e-91
At1g47650 hypothetical protein 331 1e-90
At2g20460 putative retroelement pol polyprotein 326 4e-89
At2g15870 putative retroelement pol polyprotein 313 3e-85
At2g24660 putative retroelement pol polyprotein 305 1e-82
At1g59265 polyprotein, putative 303 3e-82
At1g58889 polyprotein, putative 303 3e-82
At1g44510 polyprotein, putative 295 9e-80
At4g14460 retrovirus-related like polyprotein 293 4e-79
At2g06840 putative retroelement pol polyprotein 291 1e-78
At4g02960 putative polyprotein of LTR transposon 291 1e-78
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 368 bits (944), Expect = e-101
Identities = 176/363 (48%), Positives = 253/363 (69%), Gaps = 9/363 (2%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTT-------SKPNQVCKLSKSLY 646
+GLA+ W L Q+DV+NAFLHG+L E++YM++ G T SKP VC+L KSLY
Sbjct: 619 LGLAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKP--VCRLLKSLY 676
Query: 647 GLKQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEI 706
GLKQASR+WY++L+ + + + Q+ +D ++F K + S+ ++LVYVDD+++A + +
Sbjct: 677 GLKQASRQWYKRLSSVFLGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAV 736
Query: 707 AFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTP 766
+K ++ FKIKDLG ++FLGLE+A S GIS+CQRKY +LL D+GL G KP + P
Sbjct: 737 ENLKELLRSEFKIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIP 796
Query: 767 SDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAA 826
DP++ L + L + ++YR LVGRL+YL TRPDITF LSQFLS PT H AA
Sbjct: 797 MDPNLHLTKEMGTLLPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAA 856
Query: 827 LRVIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTK 886
+V++YLKG+PG+G+ + SS L + G+++ADW CKD+RRS++ C +LG SLI+W++K
Sbjct: 857 HKVLRYLKGNPGQGLMYSASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSK 916
Query: 887 K*PTISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDF 946
K +SR S+E+EYR++A ATCE+ WL LL+DLH+ L+CDN+S +H+A NP F
Sbjct: 917 KQSVVSRSSTESEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVF 976
Query: 947 HSR 949
H R
Sbjct: 977 HER 979
Score = 82.8 bits (203), Expect = 9e-16
Identities = 41/83 (49%), Positives = 56/83 (67%)
Query: 77 YFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITPKFIRSDNGPEFLLLEFY 136
YFLT+VDD +R WV ++KNK+EVS +FV++I T ++ K IRSDN E +F
Sbjct: 252 YFLTLVDDCTRTTWVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSDNVKELAFTKFV 311
Query: 137 ASKGIIHQKSCVETPEQNARVER 159
+G+IHQ SC TP+QN+ VER
Sbjct: 312 KEQGMIHQFSCAYTPQQNSVVER 334
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 345 bits (885), Expect = 8e-95
Identities = 176/356 (49%), Positives = 240/356 (66%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASR 653
+ +A+ W +HQ+DV+NAFLHGDL E+VYM + PG S P++VC+L KSLYGLKQA R
Sbjct: 1081 LAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPR 1140
Query: 654 KWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVI 713
W+ KL+ L + G+ Q+ D SLF+ K ++ +LVYVDD+I+AG++L I K+ +
Sbjct: 1141 CWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQL 1200
Query: 714 NQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKL 773
++ F +KDLG LKYFLGLEV+ G L QRKY LD++ + GLLG KP P + KL
Sbjct: 1201 HKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKL 1260
Query: 774 HNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYL 833
+ + P+F + YRRLVGR IYL TRPD+++ LSQF+ P H+ AALR+++YL
Sbjct: 1261 ASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYL 1320
Query: 834 KGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISR 893
KGSP +GIF SSL I Y ++D+ C TRRS+S +LG S ISW+TKK T+S
Sbjct: 1321 KGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYVVYLGDSPISWKTKKQDTVSY 1380
Query: 894 FSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
S+EAEYRAMA EL+WL LL+DL + + L+CD+++ +HIAANP FH R
Sbjct: 1381 SSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCDSEAAIHIAANPVFHER 1436
Score = 172 bits (435), Expect = 1e-42
Identities = 92/223 (41%), Positives = 129/223 (57%), Gaps = 2/223 (0%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSIS-VDNKATCDICPFAKQRKLPYNFSHSIAKSKFELL 59
+WH RLGH S L + + S D +CD C +KQ + + S++ F L+
Sbjct: 501 LWHRRLGHPSTSVLLSLPECNRSSQGFDKIDSCDTCFRSKQTREVFPISNNKTMECFSLI 560
Query: 60 YFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITP 119
+ D+WGP S G YFLT+VDD+SR +W L+ +K EVS +K F + +
Sbjct: 561 HGDVWGPYRTPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQFGKQV 620
Query: 120 KFIRSDNGPEFLLLE-FYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K R+DNG EF+ L ++ + GI+HQ SCV+TP+QN RVERKH+HILNVARA FQ LP
Sbjct: 621 KAFRTDNGTEFMCLTPYFQTHGILHQTSCVDTPQQNGRVERKHRHILNVARACLFQGNLP 680
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFK 221
FW ++L + LINR P+ L K+PY +L+ P +
Sbjct: 681 VKFWGESILTATHLINRTPSAVLKGKTPYELLFGERPSYDMLR 723
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 344 bits (883), Expect = 1e-94
Identities = 171/353 (48%), Positives = 239/353 (67%), Gaps = 6/353 (1%)
Query: 602 WFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-----PNQVCKLSKSLYGLKQASRKWY 656
WFL QLDV+NAFL+G+L E+++M + G K N V +L +S+YGLKQASR+W+
Sbjct: 1042 WFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWF 1101
Query: 657 EKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQA 716
+K + L+S G+++ D +LF K I+LVYVDDI++A S A + ++Q
Sbjct: 1102 KKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQR 1161
Query: 717 FKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHND 776
FK++DLG LKYFLGLEVA + +GIS+CQRKY L+LL G+L KPV+ P P++K+ D
Sbjct: 1162 FKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKD 1221
Query: 777 SSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGS 836
L D+ YRR+VG+L+YL TRPDITF +L QF S P TH AA RV++Y+KG+
Sbjct: 1222 DGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGT 1281
Query: 837 PGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSS 896
G+G+F+ SS L ++G+ ++DWA C+D+RRS + F+G SLISWR+KK T+SR S+
Sbjct: 1282 VGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSA 1341
Query: 897 EAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
EAEYRA+A ATCE+ WL LL L + +LY D+ + ++IA NP FH R
Sbjct: 1342 EAEYRALALATCEMVWLFTLLVSLQ-ASPPVPILYSDSTAAIYIATNPVFHER 1393
Score = 209 bits (532), Expect = 6e-54
Identities = 105/217 (48%), Positives = 138/217 (63%), Gaps = 2/217 (0%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVDNKAT--CDICPFAKQRKLPYNFSHSIAKSKFEL 58
+WH RLGH S QRL + + NK + C +C AKQRKL + S+ + K F+L
Sbjct: 557 MWHRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDL 616
Query: 59 LYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHIT 118
L+ D+WGP + ++ G+KYFLTIVDD SR W+ LLK K+EV F+Q ++ + +
Sbjct: 617 LHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVK 676
Query: 119 PKFIRSDNGPEFLLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K +RSDN PE FYA KGI+ SC ETPEQN+ VERKHQHILNVARAL FQ ++P
Sbjct: 677 VKAVRSDNAPELKFTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVP 736
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLP 215
W VL +VFLINR P+ L +K+PY +L + P
Sbjct: 737 LSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAP 773
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 342 bits (876), Expect = 8e-94
Identities = 177/357 (49%), Positives = 238/357 (66%), Gaps = 2/357 (0%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASR 653
+ +A +W +HQ+DV+NAFLHGDL E+VYM + PG S PN+VC+L K+LYGLKQA R
Sbjct: 918 LDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKVCRLRKALYGLKQAPR 977
Query: 654 KWYEKLTGLLISNGYQQATSDASLFTK-KASVSLTILLVYVDDIILAGDSLIEIAFIKNV 712
W+EKLT L G+QQ+ +D SLFT K SV + IL +YVDD+I+ G+S K
Sbjct: 978 CWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKIL-IYVDDLIITGNSQRATQQFKEY 1036
Query: 713 INQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIK 772
+ F +KDLG LKYFLG+EVA S +GI +CQRKY LD++ + GLLG KP P + + K
Sbjct: 1037 LASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLGVKPANFPLEQNHK 1096
Query: 773 LHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKY 832
L +SPL D YRRLVGRLIYL TR D+ F L++F+ +P H+ AALRV++Y
Sbjct: 1097 LGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPREDHWAAALRVVRY 1156
Query: 833 LKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTIS 892
LK PG+G+F RS I G+ ++DWAG +RRS++ G S ISW+TKK T+S
Sbjct: 1157 LKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFVQFGDSPISWKTKKQDTVS 1216
Query: 893 RFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
+ S+EAEYRAM+ EL WL LL L + V+ +++ CD++S ++IA NP FH R
Sbjct: 1217 KSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDSKSAIYIATNPVFHER 1273
Score = 186 bits (472), Expect = 6e-47
Identities = 98/225 (43%), Positives = 141/225 (62%), Gaps = 4/225 (1%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVD--NKATCDICPFAKQRKLPYNFSHSIAKSKFEL 58
+WH R+GH + + +S + + S+S NKA CD+C AKQ + + S + FEL
Sbjct: 391 LWHSRMGHPAARVVSLIPESSVSVSSTHLNKA-CDVCHRAKQTRNSFPLSINKTLRIFEL 449
Query: 59 LYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHIT 118
+Y D+WGP S G +YFLTI+DD+SR +W+ LL +K+E +K F + D ++
Sbjct: 450 IYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLNDKSEAPCHLKNFFAMTDRQFNVK 509
Query: 119 PKFIRSDNGPEFLLL-EFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKL 177
K +RSDNG EFL L +F+ +G+IH++SCV TPE+N RVERKH+H+LNVARAL FQ L
Sbjct: 510 IKTVRSDNGTEFLCLTKFFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALRFQANL 569
Query: 178 PNIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
P FW VL + +LINR P+ L+ +PY L+ P ++
Sbjct: 570 PIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPRFDHLRV 614
>At4g23160 putative protein
Length = 1240
Score = 340 bits (871), Expect = 3e-93
Identities = 170/370 (45%), Positives = 243/370 (64%), Gaps = 7/370 (1%)
Query: 587 CQSNNCKIGLA--SINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-----PNQVC 639
C+ + K+ LA +I ++ LHQLD++NAFL+GDL E++YM + PG + PN VC
Sbjct: 171 CKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVC 230
Query: 640 KLSKSLYGLKQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILA 699
L KS+YGLKQASR+W+ K + LI G+ Q+ SD + F K + +LVYVDDII+
Sbjct: 231 YLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIIC 290
Query: 700 GDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLG 759
++ + +K+ + FK++DLG LKYFLGLE+A S +GI++CQRKY LDLL + GLLG
Sbjct: 291 SNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLG 350
Query: 760 SKPVTTPSDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPT 819
KP + P DPS+ S F D AYRRL+GRL+YL TR DI+F +LSQF P
Sbjct: 351 CKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPR 410
Query: 820 HTHYNAALRVIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQS 879
H A ++++ Y+KG+ G+G+F+ + + +Q +++A + CKDTRRS + C FLG S
Sbjct: 411 LAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTS 470
Query: 880 LISWRTKK*PTISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMH 939
LISW++KK +S+ S+EAEYRA++ AT E+ WL R+L + K +L+CDN + +H
Sbjct: 471 LISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIH 530
Query: 940 IAANPDFHSR 949
IA N FH R
Sbjct: 531 IATNAVFHER 540
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 337 bits (863), Expect = 3e-92
Identities = 169/350 (48%), Positives = 235/350 (66%)
Query: 600 NHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASRKWYEKL 659
N W ++Q+DV+NAFLHGDL E+VYM + PG S P++VC+L KSLYGLKQA R W++KL
Sbjct: 1092 NQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKL 1151
Query: 660 TGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQAFKI 719
+ L+ G+ Q+ D SLF+ + +L+YVDD+++ G+ + K+ +++ F +
Sbjct: 1152 SDSLLRFGFVQSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSM 1211
Query: 720 KDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDSSP 779
KDLG LKYFLG+EV+ GI L QRKY LD++ D G LGS+P TP + + L +D P
Sbjct: 1212 KDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGP 1271
Query: 780 LFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGR 839
L +D YRRLVGRL+YL TRP++++ L+QF+ P H++AALRV++YLKGSPG+
Sbjct: 1272 LLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQ 1331
Query: 840 GIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSSEAE 899
GI L ++ Y ++DW C TRRSIS LG S ISW+TKK T+S S+EAE
Sbjct: 1332 GILLNADPDLTLEVYCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAE 1391
Query: 900 YRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
YRAM+ A E++WL LL++L I LYCD+++ +HIAANP FH R
Sbjct: 1392 YRAMSYALKEIKWLRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHER 1441
Score = 181 bits (460), Expect = 1e-45
Identities = 97/216 (44%), Positives = 131/216 (59%), Gaps = 1/216 (0%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELLY 60
+WH RLGH S LS + + S +CD+C AKQ + + S + + F L++
Sbjct: 529 LWHQRLGHPSFSVLSSLPLFSKTSSTVTSHSCDVCFRAKQTREVFPESINKTEECFSLIH 588
Query: 61 FDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITPK 120
D+WGP + G YFLTIVDD+SR +W LL K+EV + F++ + T K
Sbjct: 589 CDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTVK 648
Query: 121 FIRSDNGPEFLLLE-FYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLPN 179
+RSDNG EF+ L ++ GIIHQ SCV TP+QN RVERKH+HILNVARAL FQ LP
Sbjct: 649 MVRSDNGTEFMCLSSYFRENGIIHQTSCVGTPQQNGRVERKHRHILNVARALLFQASLPI 708
Query: 180 IFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLP 215
FW ++L + +LINR P+ L ++PY VL+ S P
Sbjct: 709 KFWGESILTAAYLINRTPSSILSGRTPYEVLHGSKP 744
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 335 bits (859), Expect = 8e-92
Identities = 168/356 (47%), Positives = 239/356 (66%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASR 653
+G+A+ W +HQ+DV+NAFLHGDL E+VYM + G P++VC+L KSLYGLKQA R
Sbjct: 694 LGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPR 753
Query: 654 KWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVI 713
W+ KL+ L G+ Q+ SD SLF+ +LVYVDD+I++G +A K+ +
Sbjct: 754 CWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAVAQFKSYL 813
Query: 714 NQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKL 773
F +KDLG LKYFLG+EV+ + G L QRKY LD++ ++GLLG++P P + + KL
Sbjct: 814 ESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKL 873
Query: 774 HNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYL 833
+SPL +D S YRRLVGRLIYL TRP++++ L+QF+ P H+NAA+RV++YL
Sbjct: 874 SLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRYL 933
Query: 834 KGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISR 893
K +PG+GI +S+L I G+ ++D+A C TRRS++ LG + ISW+TKK PTISR
Sbjct: 934 KSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTISR 993
Query: 894 FSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
S+EAEYRAMA T EL WL +L DL + V+ + ++ D++S + ++ NP H R
Sbjct: 994 SSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHER 1049
Score = 186 bits (472), Expect = 6e-47
Identities = 95/224 (42%), Positives = 137/224 (60%), Gaps = 2/224 (0%)
Query: 1 IWHFRLGHLSNQRLSKM-HQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELL 59
+WH RLGH S++ ++ + +L S + CD C AKQ + + + + F+L+
Sbjct: 291 LWHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLRDNRSMDSFQLI 350
Query: 60 YFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITP 119
+ D+WGP S G +YFLTIVDD+SR +WV L+ +K+E +K F+ +++
Sbjct: 351 HCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFMALVERQFDTEI 410
Query: 120 KFIRSDNGPEFLLL-EFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K +RSDNG EFL + E++ KGI H+ SCV TP QN RVERKH+HILN+ARAL FQ LP
Sbjct: 411 KTVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLP 470
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
FW +L + +LINR P+ L KSPY +LY + P ++
Sbjct: 471 IQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRV 514
>At1g57640
Length = 1444
Score = 334 bits (857), Expect = 1e-91
Identities = 167/356 (46%), Positives = 239/356 (66%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASR 653
+G+A+ W +HQ+DV+NAFLHGDL E+VYM + G P++VC+L KSLYGLKQA R
Sbjct: 1029 LGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPR 1088
Query: 654 KWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVI 713
W+ KL+ L G+ Q+ SD SLF+ +LVYVDD+I++G +A K+ +
Sbjct: 1089 CWFSKLSSALKQYGFTQSLSDYSLFSYNNDGIFVHVLVYVDDLIISGSCPDAVAQFKSYL 1148
Query: 714 NQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKL 773
F +KDLG LKYFLG+EV+ + G L QRKY LD++ ++GLLG++P P + + KL
Sbjct: 1149 ESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKL 1208
Query: 774 HNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYL 833
+SPL +D S YRRLVGRLIYL TRP++++ L+QF+ P H+NAA+RV++YL
Sbjct: 1209 SLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRYL 1268
Query: 834 KGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISR 893
K +PG+GI +S+L I G+ ++D+A C TRRS++ LG + ISW+TKK PT+SR
Sbjct: 1269 KSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTVSR 1328
Query: 894 FSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
S+EAEYRAMA T EL WL +L DL + V+ + ++ D++S + ++ NP H R
Sbjct: 1329 SSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHER 1384
Score = 189 bits (481), Expect = 5e-48
Identities = 96/224 (42%), Positives = 138/224 (60%), Gaps = 2/224 (0%)
Query: 1 IWHFRLGHLSNQRLSKM-HQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELL 59
+WH RLGH S++ ++ + +L S + CD C AKQ + + S + + F+L+
Sbjct: 491 LWHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQLI 550
Query: 60 YFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITP 119
+ D+WGP S G +YFLTIVDD+SR +WV L+ +K+E +K F+ +++
Sbjct: 551 HCDVWGPYRAPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFDTEI 610
Query: 120 KFIRSDNGPEFLLL-EFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K +RSDNG EFL + E++ KGI H+ SCV TP QN RVERKH+HILN+ARAL FQ LP
Sbjct: 611 KIVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLP 670
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
FW +L + +LINR P+ L KSPY +LY + P ++
Sbjct: 671 IQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRV 714
>At4g17450 retrotransposon like protein
Length = 1433
Score = 332 bits (850), Expect = 9e-91
Identities = 160/359 (44%), Positives = 233/359 (64%), Gaps = 5/359 (1%)
Query: 596 LASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVT-----TSKPNQVCKLSKSLYGLKQ 650
LA+ W +HQLD++NAFL+GDL E++YM + PG P+ +C+L KS+YGLKQ
Sbjct: 1013 LAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEALPPHAICRLHKSIYGLKQ 1072
Query: 651 ASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIK 710
ASR+WY KL+ L G+Q++ +D +LF K A+ L +LVYVDDI++ +S +A
Sbjct: 1073 ASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVLVYVDDIMIVSNSDDAVAQFT 1132
Query: 711 NVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPS 770
+ FK++DLG KYFLG+E+A S+ GIS+CQRKY L+LL G LGSKP + P DPS
Sbjct: 1133 AELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPS 1192
Query: 771 IKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVI 830
+KL+ + D ++YR+LVG+L+YL TRPDI + L QF PT H +A +V+
Sbjct: 1193 VKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVL 1252
Query: 831 KYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PT 890
+YLKG+ G+G+F+ ++GYT++D+ C D+RR ++ C F+G L+SW++KK T
Sbjct: 1253 RYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDT 1312
Query: 891 ISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
+S ++EAE+RAM+ T E+ WL L D + + LYCDN + +HI N FH R
Sbjct: 1313 VSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYLYCDNTAALHIVNNSVFHER 1371
Score = 152 bits (384), Expect = 9e-37
Identities = 87/227 (38%), Positives = 124/227 (54%), Gaps = 21/227 (9%)
Query: 2 WHFRLGHLSNQRLSKMHQ-LYPSISVDNKA------TCDICPFAKQRKLPYNFSHSIAKS 54
WH RLGH + ++ + L + NK C +C +KQ+ L + ++ +
Sbjct: 553 WHKRLGHPAYSKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNMCSA 612
Query: 55 KFELLYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTH 114
F+L++ D WGP F +D + W+ LLKNK++V F+ ++ T
Sbjct: 613 AFDLVHIDTWGP-----------FSVPTNDAT---WIYLLKNKSDVLHVFPAFINMVHTQ 658
Query: 115 HHITPKFIRSDNGPEFLLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQ 174
+ K +RSDN E + +A+ GI+ SC ETPEQN+ VERKHQHILNVARAL FQ
Sbjct: 659 YQTKLKSVRSDNAHELKFTDLFAAHGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQ 718
Query: 175 FKLPNIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFK 221
+P FW VL +VFLINR+PTP L++KSPY L + P + K
Sbjct: 719 SNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYESLK 765
>At1g70010 hypothetical protein
Length = 1315
Score = 332 bits (850), Expect = 9e-91
Identities = 165/361 (45%), Positives = 238/361 (65%), Gaps = 5/361 (1%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-----PNQVCKLSKSLYGL 648
+G+A+ L QLD++NAFL+GDL E++YM + G + + PN VC+L KSLYGL
Sbjct: 895 LGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGL 954
Query: 649 KQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAF 708
KQASR+WY K + L+ G+ Q+ D + F K + +LVY+DDII+A ++ +
Sbjct: 955 KQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDI 1014
Query: 709 IKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSD 768
+K+ + FK++DLG LKYFLGLE+ S GI + QRKY LDLL + G LG KP + P D
Sbjct: 1015 LKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMD 1074
Query: 769 PSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALR 828
PS+ +DS F +V YRRL+GRL+YLN TRPDITF +L+QF P H A +
Sbjct: 1075 PSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYK 1134
Query: 829 VIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK* 888
+++Y+KG+ G+G+F+ +S L ++ Y NAD+ C+D+RRS S C FLG SLI W+++K
Sbjct: 1135 ILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQ 1194
Query: 889 PTISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHS 948
+S+ S+EAEYR+++ AT EL WL L++L + K +L+CDN++ +HIA N FH
Sbjct: 1195 DVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHE 1254
Query: 949 R 949
R
Sbjct: 1255 R 1255
Score = 199 bits (507), Expect = 5e-51
Identities = 98/224 (43%), Positives = 140/224 (61%), Gaps = 2/224 (0%)
Query: 1 IWHFRLGHLSNQRLSKMHQL--YPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFEL 58
+WH RLGH S Q+L M L +P + C +C +KQ+ LP+ ++ + F+L
Sbjct: 406 LWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDL 465
Query: 59 LYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHIT 118
++ D WGP + + G++YFLTIVDD+SR WV LL+NK++V + FV +++ T
Sbjct: 466 IHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETT 525
Query: 119 PKFIRSDNGPEFLLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K +RSDN PE +FY SKGI+ SC ETP+QN+ VERKHQHILNVAR+L FQ +P
Sbjct: 526 IKGVRSDNAPELNFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIP 585
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
+W +L +V+LINR+P P L K P+ VL ++P K+
Sbjct: 586 ISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKV 629
>At1g47650 hypothetical protein
Length = 1409
Score = 331 bits (849), Expect = 1e-90
Identities = 167/359 (46%), Positives = 237/359 (65%), Gaps = 6/359 (1%)
Query: 596 LASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-----PNQVCKLSKSLYGLKQ 650
+++ WFL QLDV+NAFL+G+L E++YM + G K PN VC+L +S+YGLKQ
Sbjct: 827 ISASKKWFLKQLDVSNAFLNGELEEEIYMKLPEGYAARKGITLPPNSVCRLKRSIYGLKQ 886
Query: 651 ASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIK 710
ASR+W++K + L+ G+++ D +LF K+ I+LVYVDDI +A S +
Sbjct: 887 ASRQWFKKFSASLLDLGFKKTHGDHTLFIKEYDGEFVIVLVYVDDIAIASTSEGAAIQLT 946
Query: 711 NVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPS 770
+ Q FK++DLG LKYFLGLE+A +++GIS+CQRKY L+LL G++ KPV+ P P+
Sbjct: 947 QDLQQRFKLRDLGDLKYFLGLEIARTEAGISICQRKYALELLASTGMVNCKPVSVPMIPN 1006
Query: 771 IKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVI 830
+K+ L D YRR+VG+L+YL TR DITF +L QF S P +H AA RV+
Sbjct: 1007 VKMMKTDGDLLDDREQYRRIVGKLMYLTITRLDITFAVNKLCQFSSAPRTSHLQAAYRVL 1066
Query: 831 KYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PT 890
+Y+KGS G+G+F+ S+ L ++G+ ++DWA C D+RRS + F+G SLISWR+KK
Sbjct: 1067 QYIKGSVGQGLFYSASADLTLKGFADSDWASCPDSRRSTTGFSMFVGDSLISWRSKKQHV 1126
Query: 891 ISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
+SR S+EAEYRA+A TCEL WL LL L + + VLY D+ + ++IA NP FH R
Sbjct: 1127 VSRSSAEAEYRALALVTCELVWLHTLLMSLKASYL-VPVLYSDSTTAIYIATNPVFHER 1184
Score = 205 bits (521), Expect = 1e-52
Identities = 101/217 (46%), Positives = 136/217 (62%), Gaps = 2/217 (0%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVDNKAT--CDICPFAKQRKLPYNFSHSIAKSKFEL 58
+WH RLGH S QRL + + NK + C +C AKQRKLP+ + + F+L
Sbjct: 458 MWHRRLGHASLQRLDVISDSLGTTKPKNKGSDYCHVCHLAKQRKLPFPSQNKVCNEIFDL 517
Query: 59 LYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHIT 118
L+ DIWGP + ++ G+KYFLTIVDD SR W+ LL+NK+EV F++ ++ + +
Sbjct: 518 LHIDIWGPFSVETVDGYKYFLTIVDDHSRATWIYLLRNKSEVLTVFPAFIEQVENQYKVR 577
Query: 119 PKFIRSDNGPEFLLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K +RSDN PE Y KGI+ SC ETPEQN VERKHQHILNV+RAL FQ ++P
Sbjct: 578 VKAVRSDNAPELKFTSLYQQKGIVSFHSCPETPEQNLVVERKHQHILNVSRALMFQSQVP 637
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLP 215
W VL +VFLINR P+ L +K+PY +L ++P
Sbjct: 638 LSLWGDCVLTAVFLINRTPSQLLSNKTPYEILTGTVP 674
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 326 bits (836), Expect = 4e-89
Identities = 164/353 (46%), Positives = 231/353 (64%), Gaps = 6/353 (1%)
Query: 602 WFLHQLDVNNAFLHGDLHEDVYMTVLPGV-----TTSKPNQVCKLSKSLYGLKQASRKWY 656
W+L+QLD++NAFL+GDL E +YM + G T+ PN VC+L KS+YGLKQASR+W+
Sbjct: 1049 WYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWF 1108
Query: 657 EKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQA 716
K + L++ G+++ D +LF + +LLVYVDDI++A + + + +
Sbjct: 1109 LKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKAS 1168
Query: 717 FKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHND 776
FK+++LG LKYFLGLEVA + GISL QRKY L+LL +L KP + P P+I+L +
Sbjct: 1169 FKLRELGPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKN 1228
Query: 777 SSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGS 836
L D YRRLVG+L+YL TRPDITF +L QF S P H A +V++Y+KG+
Sbjct: 1229 DGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGT 1288
Query: 837 PGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSS 896
G+G+F+ L ++GYT+ADW C D+RRS + F+G SLISWR+KK PT+SR S+
Sbjct: 1289 VGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSA 1348
Query: 897 EAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
EAEYRA+A A+CE+ WL LL L + + +LY D+ + ++IA NP FH R
Sbjct: 1349 EAEYRALALASCEMAWLSTLLLALRVHS-GVPILYSDSTAAVYIATNPVFHER 1400
Score = 207 bits (528), Expect = 2e-53
Identities = 104/223 (46%), Positives = 141/223 (62%), Gaps = 2/223 (0%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVDNK--ATCDICPFAKQRKLPYNFSHSIAKSKFEL 58
+WH RLGH S RL + ++ + NK A C +C AKQ+KL + +++I S FEL
Sbjct: 568 VWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFEL 627
Query: 59 LYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHIT 118
L+ D+WGP + ++ G+KYFLTIVDD SR W+ LLK+K++V F+ +++ +
Sbjct: 628 LHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTR 687
Query: 119 PKFIRSDNGPEFLLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLP 178
K +RSDN E EFY +KGI+ SC ETPEQN+ VERKHQHILNVARAL FQ +
Sbjct: 688 VKSVRSDNAKELAFTEFYKAKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMS 747
Query: 179 NIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFK 221
+W VL +VFLINR P+ L +K+P+ VL LPD K
Sbjct: 748 LPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTGKLPDYSQLK 790
>At2g15870 putative retroelement pol polyprotein
Length = 1264
Score = 313 bits (802), Expect = 3e-85
Identities = 160/359 (44%), Positives = 229/359 (63%), Gaps = 6/359 (1%)
Query: 596 LASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-----PNQVCKLSKSLYGLKQ 650
+++ WF+ QLDV+NAFL+G+L E++YM + G K N VC+L +S+YGLKQ
Sbjct: 846 ISASKKWFMKQLDVSNAFLNGELEEEIYMKLPEGYAERKGIILPSNVVCRLKRSIYGLKQ 905
Query: 651 ASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIK 710
ASR+W++K + L+S + + D +LF K ++LVYVDDI++A + +
Sbjct: 906 ASRQWFKKFSASLLSLRFFKTHGDHTLFLKDCGGEYVVVLVYVDDIVIASTNEAAAVQLS 965
Query: 711 NVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPS 770
+ FK++DLG LKYFLGLE+ +++GISLCQRKY L+LL G++ K V+ P P+
Sbjct: 966 QDLQNLFKLRDLGDLKYFLGLEITRTEAGISLCQRKYALELLASTGMINCKLVSVPMVPN 1025
Query: 771 IKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVI 830
+KL L D YRR+VG L+YL TRPDITF +L QF PT H AA RV+
Sbjct: 1026 LKLMKVDGELLEDREQYRRIVGTLMYLTITRPDITFAVNKLCQFSYAPTTAHLQAAHRVL 1085
Query: 831 KYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PT 890
+Y+KG+ G+G+F+ SS L ++G+ ++DWA C D+R S + F+G SLIS R+KK
Sbjct: 1086 QYIKGTVGQGLFYSASSDLTLKGFADSDWASCPDSRHSTTGFTMFVGDSLISLRSKKQHV 1145
Query: 891 ISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
+SR S+EAEYRA+A ATCEL WL LL L + +L+ D+ + ++IA NP FH R
Sbjct: 1146 VSRSSAEAEYRALALATCELVWLHTLLASL-TAATTIPILFSDSTAAIYIAINPVFHER 1203
Score = 196 bits (497), Expect = 7e-50
Identities = 99/216 (45%), Positives = 133/216 (60%), Gaps = 2/216 (0%)
Query: 2 WHFRLGHLSNQRLSKMHQLYPSISVDNKAT--CDICPFAKQRKLPYNFSHSIAKSKFELL 59
WH RL H S QRL + + + NK + C +C AK RKL + +++ FE+L
Sbjct: 417 WHNRLRHASLQRLDVISESLGTTKHKNKGSDYCHVCHLAKHRKLSFPSQNNVCNEIFEML 476
Query: 60 YFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITP 119
+ DIWGP + ++ G++YFLTIVDD SR W+ LLK K+EV F+Q ++ + +
Sbjct: 477 HIDIWGPFSVETVDGYQYFLTIVDDHSRATWIYLLKTKSEVLTIFHDFIQQVENQYKVKV 536
Query: 120 KFIRSDNGPEFLLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLPN 179
K +RSDN PE Y KGI+ SC ETPEQN+ VERKHQHILNVARAL FQ ++P
Sbjct: 537 KAVRSDNAPELRFTSLYQRKGIMAFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPL 596
Query: 180 IFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLP 215
W VL +VFLINR P+ L +K+PY +L + P
Sbjct: 597 FLWGECVLTAVFLINRTPSQLLSNKTPYEILSGTAP 632
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 305 bits (780), Expect = 1e-82
Identities = 159/354 (44%), Positives = 217/354 (60%), Gaps = 21/354 (5%)
Query: 596 LASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASRKW 655
L + N W ++Q+DVNNAFLHGDL E+VYM + PG S P++VC+L KSLYGLKQA R W
Sbjct: 735 LVAANQWEVYQMDVNNAFLHGDLDEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCW 794
Query: 656 YEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQ 715
++KL+ L+ G+ Q D S F+ + +LVYVDD+++ G+ + K + +
Sbjct: 795 FKKLSDALLRFGFVQGHEDYSFFSYTRNGIELRVLVYVDDLLICGNDGYMLQKFKEYLGR 854
Query: 716 AFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHN 775
F +KDLG LKYFLG+EV+ GI L QRKY LD++ D G LG +P TP + + L
Sbjct: 855 CFSMKDLGKLKYFLGIEVSRGSEGIFLSQRKYALDIITDSGNLGCRPALTPLEQNHHLAT 914
Query: 776 DSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKG 835
D PL AD YRRLVGRL+YL TRP++++ LSQF+ P H AA+R++++LKG
Sbjct: 915 DDGPLLADAKPYRRLVGRLLYLLHTRPELSYSVHVLSQFMQTPREAHLAAAMRIVRFLKG 974
Query: 836 SPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFS 895
SPG+GI + L + Y ++D+ C TRRS+S LG S ISW+TKK T+S S
Sbjct: 975 SPGQGILLNADTELQLDVYCDSDFQTCPKTRRSLSAYVVLLGGSPISWKTKKQDTVSHSS 1034
Query: 896 SEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
+EAEYRAM+ A E++WL LL++L ANP FH R
Sbjct: 1035 AEAEYRAMSVALREIKWLRKLLKEL---------------------ANPVFHER 1067
Score = 182 bits (461), Expect = 1e-45
Identities = 99/223 (44%), Positives = 134/223 (59%), Gaps = 1/223 (0%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELLY 60
+WH RLGH S LS + L S +CD+C AKQ + + S + + F L++
Sbjct: 90 LWHQRLGHPSFSVLSSLPVLTSSSLSVGSRSCDVCFRAKQTREVFPVSTNKSIECFSLIH 149
Query: 61 FDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITPK 120
D+WGP S G YFLTIVDDFSR +W LL K+EV + F+ + + K
Sbjct: 150 CDVWGPYRVPSSCGAVYFLTIVDDFSRAVWTYLLLAKSEVRTVLTNFLVYTEKQFGKSVK 209
Query: 121 FIRSDNGPEFLLL-EFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLPN 179
+RSDNG EF+ L ++ GI+HQ SCV TP+QN RVERKH+HILNVARA+ FQ LP
Sbjct: 210 VLRSDNGTEFMCLASYFREHGIVHQTSCVGTPQQNGRVERKHRHILNVARAILFQASLPI 269
Query: 180 IFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
FW AVL + +LINR PT + SPY +L++S P+ + ++
Sbjct: 270 QFWGEAVLTAAYLINRTPTSLHNGLSPYEILHNSKPNYEHLRV 312
>At1g59265 polyprotein, putative
Length = 1466
Score = 303 bits (777), Expect = 3e-82
Identities = 158/357 (44%), Positives = 221/357 (61%), Gaps = 1/357 (0%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPG-VTTSKPNQVCKLSKSLYGLKQAS 652
+G+A W + QLDVNNAFL G L +DVYM+ PG + +PN VCKL K+LYGLKQA
Sbjct: 1051 LGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAP 1110
Query: 653 RKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNV 712
R WY +L L++ G+ + SD SLF + S+ +LVYVDDI++ G+ + +
Sbjct: 1111 RAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDN 1170
Query: 713 INQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIK 772
++Q F +KD L YFLG+E +G+ L QR+Y LDLL ++ +KPVTTP PS K
Sbjct: 1171 LSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPK 1230
Query: 773 LHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKY 832
L S D + YR +VG L YL TRPDI++ +LSQF+ PT H A R+++Y
Sbjct: 1231 LSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRY 1290
Query: 833 LKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTIS 892
L G+P GIF + ++L + Y++ADWAG KD S + +LG ISW +KK +
Sbjct: 1291 LAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVV 1350
Query: 893 RFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
R S+EAEYR++A+ + E+QW+ LL +L IR + V+YCDN ++ ANP FHSR
Sbjct: 1351 RSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSR 1407
Score = 127 bits (320), Expect = 2e-29
Identities = 75/227 (33%), Positives = 118/227 (51%), Gaps = 9/227 (3%)
Query: 2 WHFRLGHLSNQRLSKMHQLYPSISVDNKA----TCDICPFAKQRKLPYNFSHSIAKSKFE 57
WH RLGH + L+ + Y S+SV N + +C C K K+P++ S + E
Sbjct: 467 WHARLGHPAPSILNSVISNY-SLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLE 525
Query: 58 LLYFDIWG-PLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHH 116
+Y D+W P+ S ++Y++ VD F+R+ W+ LK K++V F +++
Sbjct: 526 YIYSDVWSSPIL--SHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQ 583
Query: 117 ITPKFIRSDNGPEFLLL-EFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQF 175
SDNG EF+ L E+++ GI H S TPE N ERKH+HI+ L
Sbjct: 584 TRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHA 643
Query: 176 KLPNIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
+P +W YA +V+LINR+PTP L +SP+ L+ + P+ ++
Sbjct: 644 SIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRV 690
>At1g58889 polyprotein, putative
Length = 1466
Score = 303 bits (777), Expect = 3e-82
Identities = 158/357 (44%), Positives = 221/357 (61%), Gaps = 1/357 (0%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPG-VTTSKPNQVCKLSKSLYGLKQAS 652
+G+A W + QLDVNNAFL G L +DVYM+ PG + +PN VCKL K+LYGLKQA
Sbjct: 1051 LGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAP 1110
Query: 653 RKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNV 712
R WY +L L++ G+ + SD SLF + S+ +LVYVDDI++ G+ + +
Sbjct: 1111 RAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDN 1170
Query: 713 INQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIK 772
++Q F +KD L YFLG+E +G+ L QR+Y LDLL ++ +KPVTTP PS K
Sbjct: 1171 LSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPK 1230
Query: 773 LHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKY 832
L S D + YR +VG L YL TRPDI++ +LSQF+ PT H A R+++Y
Sbjct: 1231 LSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRY 1290
Query: 833 LKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTIS 892
L G+P GIF + ++L + Y++ADWAG KD S + +LG ISW +KK +
Sbjct: 1291 LAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVV 1350
Query: 893 RFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
R S+EAEYR++A+ + E+QW+ LL +L IR + V+YCDN ++ ANP FHSR
Sbjct: 1351 RSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSR 1407
Score = 127 bits (320), Expect = 2e-29
Identities = 75/227 (33%), Positives = 118/227 (51%), Gaps = 9/227 (3%)
Query: 2 WHFRLGHLSNQRLSKMHQLYPSISVDNKA----TCDICPFAKQRKLPYNFSHSIAKSKFE 57
WH RLGH + L+ + Y S+SV N + +C C K K+P++ S + E
Sbjct: 467 WHARLGHPAPSILNSVISNY-SLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLE 525
Query: 58 LLYFDIWG-PLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHH 116
+Y D+W P+ S ++Y++ VD F+R+ W+ LK K++V F +++
Sbjct: 526 YIYSDVWSSPIL--SHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQ 583
Query: 117 ITPKFIRSDNGPEFLLL-EFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQF 175
SDNG EF+ L E+++ GI H S TPE N ERKH+HI+ L
Sbjct: 584 TRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHA 643
Query: 176 KLPNIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
+P +W YA +V+LINR+PTP L +SP+ L+ + P+ ++
Sbjct: 644 SIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRV 690
>At1g44510 polyprotein, putative
Length = 1459
Score = 295 bits (755), Expect = 9e-80
Identities = 159/357 (44%), Positives = 217/357 (60%), Gaps = 1/357 (0%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPG-VTTSKPNQVCKLSKSLYGLKQAS 652
+ +A +W L QLDVNNAFL G L E+VYM PG V +P+ VC+L K++YGLKQA
Sbjct: 1044 LDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGFVDKDRPSHVCRLRKAIYGLKQAP 1103
Query: 653 RKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNV 712
R WY +L L++ G+ + +D SLF +L LLVYVDDII+ G ++ + +
Sbjct: 1104 RAWYMELKQHLLNIGFVNSLADTSLFIYSHGTTLLYLLVYVDDIIVTGSDHKSVSAVLSS 1163
Query: 713 INQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIK 772
+ + F IKD L YFLG+E + +G+ L QRKY DLL +L +KPV TP S K
Sbjct: 1164 LAERFSIKDPTDLHYFLGIEATRTNTGLHLMQRKYMTDLLAKHNMLDAKPVATPLPTSPK 1223
Query: 773 LHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKY 832
L D S YR +VG L YL TRPDI F +LSQF+ +PT H+ AA RV++Y
Sbjct: 1224 LTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAFAVNRLSQFMHQPTSDHWQAAKRVLRY 1283
Query: 833 LKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTIS 892
L G+ GIF SS +H+ +++ADWAG S + +LG++ ISW +KK +S
Sbjct: 1284 LAGTTTHGIFLNSSSPIHLHAFSDADWAGDSADYVSTNAYVIYLGRNPISWSSKKQRGVS 1343
Query: 893 RFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
R S+E+EYRA+A+A E++WL LL +LHIR ++CDN +I ANP FHSR
Sbjct: 1344 RSSTESEYRAVANAASEIRWLCSLLTELHIRLPHGPTIFCDNIGATYICANPVFHSR 1400
Score = 142 bits (359), Expect = 7e-34
Identities = 83/227 (36%), Positives = 123/227 (53%), Gaps = 9/227 (3%)
Query: 2 WHFRLGHLS----NQRLSKMHQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFE 57
WH RLGH S N LSK L S++ NK +C C K KLP+ S + S E
Sbjct: 473 WHSRLGHPSASILNTLLSKF-SLPVSVASSNKTSCSDCLINKSHKLPFATSSIHSSSPLE 531
Query: 58 LLYFDIW-GPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHH 116
++ D+W P+ S +KY+L +VD ++R+ W+ L+ K++V F +++
Sbjct: 532 YIFTDVWTSPII--SHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKALVENRFQ 589
Query: 117 ITPKFIRSDNGPEFLLL-EFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQF 175
+ + SDNG EF+ L +F S GI H S TPE N ERKH+HI+ L Q
Sbjct: 590 AKIRTLYSDNGGEFIALRDFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQA 649
Query: 176 KLPNIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
+P +W+YA +V+LINR+PTP L +SP+ L+ S P+ Q ++
Sbjct: 650 SVPREYWTYAFATAVYLINRMPTPVLCLQSPFQKLFGSSPNYQRLRV 696
>At4g14460 retrovirus-related like polyprotein
Length = 1489
Score = 293 bits (749), Expect = 4e-79
Identities = 153/361 (42%), Positives = 215/361 (59%), Gaps = 58/361 (16%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-----PNQVCKLSKSLYGL 648
+GLA+I W L Q+DV++AFLHGDL E+++M++ G T PN VC+L KS+YGL
Sbjct: 1117 LGLAAITGWTLTQMDVSDAFLHGDLDEEIFMSLPQGYTPPAGTILPPNPVCRLLKSIYGL 1176
Query: 649 KQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAF 708
KQASR+WY++ LVY+DDI++A ++ E+
Sbjct: 1177 KQASRQWYKRFVA---------------------------ALVYIDDIMIASNNDAEVEN 1209
Query: 709 IKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSD 768
+K ++ FKIKDLG ++F LGLLG KP + P D
Sbjct: 1210 LKALLRSEFKIKDLGPARFF--------------------------LGLLGCKPSSIPMD 1243
Query: 769 PSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALR 828
P++ L D + +AYR+L+GRL+YL TRPDIT+ QLSQF+S P+ H AA +
Sbjct: 1244 PTLHLVRDMGTPLPNPTAYRKLIGRLLYLTITRPDITYAVHQLSQFISAPSDIHLQAAHK 1303
Query: 829 VIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK* 888
V++Y+K +PG+G+ + + + G+++ADWA CKDTRRSIS C +LG SLISW++KK
Sbjct: 1304 VLRYIKANPGQGLMYSADYEICLNGFSDADWAACKDTRRSISGFCIYLGTSLISWKSKKQ 1363
Query: 889 PTISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHS 948
SR S+E+EYR+MA ATCE+ WL LL+DLHI L+CDN+S +H + NP FH
Sbjct: 1364 AVASRSSTESEYRSMAQATCEIIWLQQLLKDLHIPLTCPAKLFCDNKSALHSSLNPVFHE 1423
Query: 949 R 949
R
Sbjct: 1424 R 1424
Score = 180 bits (457), Expect = 3e-45
Identities = 93/221 (42%), Positives = 131/221 (59%), Gaps = 23/221 (10%)
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELLY 60
+WH RLGH S+ L K+ ++L Y +++A + F+L++
Sbjct: 601 LWHQRLGHPSSVVLQKL-----------------------KRLAYISHNNLASNPFDLVH 637
Query: 61 FDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITPK 120
DIWGP + SI G +YFLT+VDD +R WV +L+NK +VS F++++ T + K
Sbjct: 638 LDIWGPFSIESIEGFRYFLTVVDDCTRTTWVYMLRNKKDVSSVFPEFIKLVSTQFNAKIK 697
Query: 121 FIRSDNGPEFLLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARALPFQFKLPNI 180
IRSDN PE E G++H SC TP+QN+ VERKHQHILNVARAL FQ +P
Sbjct: 698 AIRSDNAPELGFTEIVKEHGMLHHFSCAYTPQQNSVVERKHQHILNVARALLFQSNIPMQ 757
Query: 181 FWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFK 221
+WS V +VFLINR+P+P L++KSPY ++ + PD K
Sbjct: 758 YWSDCVTTAVFLINRLPSPLLNNKSPYELILNKQPDYSLLK 798
>At2g06840 putative retroelement pol polyprotein
Length = 1102
Score = 291 bits (746), Expect = 1e-78
Identities = 153/356 (42%), Positives = 218/356 (60%), Gaps = 22/356 (6%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSKPNQVCKLSKSLYGLKQASR 653
+ +A+ W + Q+DV+NAFLHGDL ++ SLYGLKQA R
Sbjct: 713 LAVAAAKDWDVFQMDVHNAFLHGDLEQE----------------------SLYGLKQAPR 750
Query: 654 KWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVI 713
W+ KL+ L G+ Q+ D SLF+ ++ LVYVDD I+ G++L I K +
Sbjct: 751 CWFAKLSTALRKLGFTQSYEDYSLFSLNRDGTVIHFLVYVDDFIIVGNNLKAIDHFKEHL 810
Query: 714 NQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKL 773
++ F +KDLG LKYFLGLEV+ G L Q+KY LD++++ GLLG KP P + KL
Sbjct: 811 HKCFHMKDLGKLKYFLGLEVSRGADGFCLSQQKYALDIINEAGLLGYKPSAVPMELHHKL 870
Query: 774 HNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYL 833
+ SSP+F + + YRRLV R IYL TRPD+++ LSQF+ P H++A LR+++YL
Sbjct: 871 GSISSPVFDNPAQYRRLVDRFIYLTITRPDLSYAVHILSQFMQTPLEAHWHATLRLVRYL 930
Query: 834 KGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISR 893
KGSP +GI +L + Y ++D+ C TRRS+S +LG + ISW+TKK T+S
Sbjct: 931 KGSPDQGILLRSDRALSLTAYCDSDYNPCPRTRRSLSAYVLYLGDTPISWKTKKQDTVSS 990
Query: 894 FSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
S+EAEYRAMA E++WL L+ L + + ++L+CD+Q+ +HIAANP FH R
Sbjct: 991 SSAEAEYRAMAYTLKEIKWLKALMTTLGVDHTQPILLFCDSQAAIHIAANPVFHER 1046
Score = 85.1 bits (209), Expect = 2e-16
Identities = 49/129 (37%), Positives = 69/129 (52%), Gaps = 20/129 (15%)
Query: 96 NKAEVSLP--VKIFVQIIDTHHHITPKFIRSDNGPEFLL-LEFYASKGIIHQKSCVETPE 152
++A+ +LP ++ F + D + IRSDNG EF+ ++ GI+H+ SCV+TP+
Sbjct: 345 SRAKQTLPSLIRNFCAMADRQFRKPVRSIRSDNGTEFMCHTSYFQEHGILHETSCVDTPQ 404
Query: 153 QNARVERKHQHILNVARALPFQFKLPNIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYD 212
QNARVERKH+HILNVAR FQ P P+P L K+PY VL+
Sbjct: 405 QNARVERKHRHILNVARTCLFQGNFP-----------------TPSPVLKGKTPYEVLFG 447
Query: 213 SLPDIQFFK 221
P +
Sbjct: 448 KQPSYDMLR 456
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 291 bits (745), Expect = 1e-78
Identities = 152/357 (42%), Positives = 219/357 (60%), Gaps = 1/357 (0%)
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPG-VTTSKPNQVCKLSKSLYGLKQAS 652
+G+A W + QLDVNNAFL G L ++VYM+ PG V +P+ VC+L K++YGLKQA
Sbjct: 1034 LGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAP 1093
Query: 653 RKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNV 712
R WY +L L++ G+ + SD SLF + S+ +LVYVDDI++ G+ + + +
Sbjct: 1094 RAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDA 1153
Query: 713 INQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIK 772
++Q F +K+ L YFLG+E G+ L QR+Y LDLL +L +KPV TP S K
Sbjct: 1154 LSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPK 1213
Query: 773 LHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKY 832
L S D + YR +VG L YL TRPD+++ +LSQ++ PT H+NA RV++Y
Sbjct: 1214 LTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRY 1273
Query: 833 LKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTIS 892
L G+P GIF + ++L + Y++ADWAG D S + +LG ISW +KK +
Sbjct: 1274 LAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVV 1333
Query: 893 RFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
R S+EAEYR++A+ + ELQW+ LL +L I+ V+YCDN ++ ANP FHSR
Sbjct: 1334 RSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSR 1390
Score = 132 bits (333), Expect = 8e-31
Identities = 79/227 (34%), Positives = 122/227 (52%), Gaps = 9/227 (3%)
Query: 2 WHFRLGHLSNQRLSKM---HQLYPSISVDNKA-TCDICPFAKQRKLPYNFSHSIAKSKFE 57
WH RLGH S L+ + H L P ++ +K +C C K K+P++ S + E
Sbjct: 446 WHSRLGHPSLAILNSVISNHSL-PVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLE 504
Query: 58 LLYFDIWG-PLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHH 116
+Y D+W P+ SI ++Y++ VD F+R+ W+ LK K++V IF +++
Sbjct: 505 YIYSDVWSSPIL--SIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQ 562
Query: 117 ITPKFIRSDNGPEFLLLEFYASK-GIIHQKSCVETPEQNARVERKHQHILNVARALPFQF 175
+ SDNG EF++L Y S+ GI H S TPE N ERKH+HI+ + L
Sbjct: 563 TRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHA 622
Query: 176 KLPNIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDSLPDIQFFKI 222
+P +W YA +V+LINR+PTP L +SP+ L+ P+ + K+
Sbjct: 623 SVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKV 669
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.340 0.149 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,980,018
Number of Sequences: 26719
Number of extensions: 848750
Number of successful extensions: 3457
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2938
Number of HSP's gapped (non-prelim): 239
length of query: 1021
length of database: 11,318,596
effective HSP length: 109
effective length of query: 912
effective length of database: 8,406,225
effective search space: 7666477200
effective search space used: 7666477200
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC136506.7