BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136504.11 + phase: 0
(137 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51300 rac-like GTP binding protein Arac11 244 8e-66
At4g35950 ras-related small GTP-binding protein 244 1e-65
At2g17800 putative GTP-binding protein 244 1e-65
At1g75840 rac-like GTP binding protein (ARAC5) 239 3e-64
At4g35020 Rho1Ps homolog/ Rac-like protein 239 4e-64
At5g45970 Rac-like gtp binding protein ARAC2 (sp|Q38903) 235 5e-63
At1g20090 RAC-like GTP-binding protein ARAC4 235 5e-63
At5g62880 Arac10 224 1e-59
At3g48040 rac GTP binding protein Arac8 (Arac8) 223 3e-59
At2g44690 rac-like protein ARAC9 (ARAC9) 219 5e-58
At4g28950 rac GTP binding protein Arac7 217 2e-57
At5g03520 GTP-binding protein - like 82 9e-17
At3g09900 putative Ras-like GTP-binding protein 82 9e-17
At3g54840 small GTPase Ara6 (ARA6) 81 2e-16
At5g59840 GTP-binding protein ara-3 80 3e-16
At3g53610 GTPase AtRAB8 80 3e-16
At3g46060 GTP-binding protein ara-3 80 3e-16
At1g02130 GTP-binding protein, ara-5 80 3e-16
At1g16920 unknown protein 79 6e-16
At4g17530 ras-related small GTP-binding protein RAB1c 78 1e-15
>At3g51300 rac-like GTP binding protein Arac11
Length = 197
Score = 244 bits (624), Expect = 8e-66
Identities = 118/122 (96%), Positives = 121/122 (98%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRF+KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD
Sbjct: 1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120
Query: 121 GM 122
+
Sbjct: 121 DL 122
>At4g35950 ras-related small GTP-binding protein
Length = 197
Score = 244 bits (622), Expect = 1e-65
Identities = 118/122 (96%), Positives = 121/122 (98%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWD
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120
Query: 121 GM 122
+
Sbjct: 121 DL 122
>At2g17800 putative GTP-binding protein
Length = 197
Score = 244 bits (622), Expect = 1e-65
Identities = 118/122 (96%), Positives = 121/122 (98%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWD
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120
Query: 121 GM 122
+
Sbjct: 121 DL 122
>At1g75840 rac-like GTP binding protein (ARAC5)
Length = 196
Score = 239 bits (610), Expect = 3e-64
Identities = 115/122 (94%), Positives = 121/122 (98%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 121 GM 122
+
Sbjct: 121 DL 122
>At4g35020 Rho1Ps homolog/ Rac-like protein
Length = 198
Score = 239 bits (609), Expect = 4e-64
Identities = 112/122 (91%), Positives = 121/122 (98%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV+V+G+T+NLGLWD
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENVSKKW+PEL+HYAPGVPIILVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120
Query: 121 GM 122
+
Sbjct: 121 DL 122
>At5g45970 Rac-like gtp binding protein ARAC2 (sp|Q38903)
Length = 201
Score = 235 bits (600), Expect = 5e-63
Identities = 110/122 (90%), Positives = 119/122 (97%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MS +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKW+PELKHYAPG+PI+LVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120
Query: 121 GM 122
+
Sbjct: 121 DL 122
>At1g20090 RAC-like GTP-binding protein ARAC4
Length = 195
Score = 235 bits (600), Expect = 5e-63
Identities = 112/120 (93%), Positives = 119/120 (98%)
Query: 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
ASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTA
Sbjct: 2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTA 61
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLGM 122
GQEDYNRLRPLSYRGADVFILAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKL +
Sbjct: 62 GQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDL 121
>At5g62880 Arac10
Length = 215
Score = 224 bits (570), Expect = 1e-59
Identities = 103/121 (85%), Positives = 116/121 (95%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
SAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVVV G+TVNLGLWDT
Sbjct: 4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDT 63
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLG 121
AGQEDYNRLRPLSYRGADVF+L+FSL+S+ASYENV KKWIPEL+H+APGVP++LVGTKL
Sbjct: 64 AGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKLD 123
Query: 122 M 122
+
Sbjct: 124 L 124
>At3g48040 rac GTP binding protein Arac8 (Arac8)
Length = 208
Score = 223 bits (567), Expect = 3e-59
Identities = 104/121 (85%), Positives = 114/121 (93%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
SAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFS NVVV G TVNLGLWDT
Sbjct: 4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSVNVVVEGITVNLGLWDT 63
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLG 121
AGQEDYNRLRPLSYRGADVF+LAFSLIS+ASYENV KKWIPEL+H+APGVPI+LVGTK+
Sbjct: 64 AGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFKKWIPELQHFAPGVPIVLVGTKMD 123
Query: 122 M 122
+
Sbjct: 124 L 124
>At2g44690 rac-like protein ARAC9 (ARAC9)
Length = 209
Score = 219 bits (557), Expect = 5e-58
Identities = 101/118 (85%), Positives = 114/118 (96%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
+A+ FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF+ANV+V+G TVNLGLWDT
Sbjct: 14 TATTFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVLVDGKTVNLGLWDT 73
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTK 119
AGQEDYNR+RPLSYRGADVFILAFSLIS+ S+EN++KKW+PEL+HYAP VPI+LVGTK
Sbjct: 74 AGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPELRHYAPTVPIVLVGTK 131
>At4g28950 rac GTP binding protein Arac7
Length = 209
Score = 217 bits (552), Expect = 2e-57
Identities = 101/122 (82%), Positives = 113/122 (91%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+G VNLGLWD
Sbjct: 1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PEL+ +AP VPI+LVGTKL
Sbjct: 61 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
Query: 121 GM 122
+
Sbjct: 121 DL 122
>At5g03520 GTP-binding protein - like
Length = 216
Score = 82.0 bits (201), Expect = 9e-17
Identities = 41/118 (34%), Positives = 70/118 (58%), Gaps = 3/118 (2%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
IK + +GD VGK+CLL+ ++ +TF T ++ T+ +F V ++G + L +WDTAGQE
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQE 75
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLGM 122
+ + YRGA +L + + ++S+ N+ + W+ + +H + V ILVG K M
Sbjct: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMKNIEQHASDNVNKILVGNKADM 132
>At3g09900 putative Ras-like GTP-binding protein
Length = 218
Score = 82.0 bits (201), Expect = 9e-17
Identities = 41/118 (34%), Positives = 70/118 (58%), Gaps = 3/118 (2%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
IK + +GD VGK+CLL+ ++ +TF T ++ T+ +F V ++G + L +WDTAGQE
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQE 75
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLGM 122
+ + YRGA +L + + ++S+ N+ + W+ + +H + V ILVG K M
Sbjct: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMKNIEQHASDSVNKILVGNKADM 132
>At3g54840 small GTPase Ara6 (ARA6)
Length = 202
Score = 80.9 bits (198), Expect = 2e-16
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGSTVNLGLWDTAGQ 64
+K V +GD VGK+C+++ + F TV +F + + + +TV +WDTAGQ
Sbjct: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTK 119
E Y+ L PL YRGA V ++ + + S S++ ++ W+ EL KH +P + + LVG K
Sbjct: 94 ERYSALAPLYYRGAGVAVIVYDITSPESFKK-AQYWVKELQKHGSPDIVMALVGNK 148
>At5g59840 GTP-binding protein ara-3
Length = 216
Score = 80.5 bits (197), Expect = 3e-16
Identities = 40/118 (33%), Positives = 69/118 (57%), Gaps = 3/118 (2%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
IK + +GD VGK+CLL+ ++ +F T ++ T+ +F + ++G + L +WDTAGQE
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLGM 122
+ + YRGA +L + + ++S+ N+ + WI + +H + V ILVG K M
Sbjct: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM 132
>At3g53610 GTPase AtRAB8
Length = 216
Score = 80.5 bits (197), Expect = 3e-16
Identities = 40/118 (33%), Positives = 69/118 (57%), Gaps = 3/118 (2%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
IK + +GD VGK+CLL+ ++ +F T ++ T+ +F + ++G + L +WDTAGQE
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLGM 122
+ + YRGA +L + + ++S+ N+ + WI + +H + V ILVG K M
Sbjct: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDSVNKILVGNKADM 132
>At3g46060 GTP-binding protein ara-3
Length = 216
Score = 80.5 bits (197), Expect = 3e-16
Identities = 40/118 (33%), Positives = 69/118 (57%), Gaps = 3/118 (2%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
IK + +GD VGK+CLL+ ++ +F T ++ T+ +F + ++G + L +WDTAGQE
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLGM 122
+ + YRGA +L + + ++S+ N+ + WI + +H + V ILVG K M
Sbjct: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM 132
>At1g02130 GTP-binding protein, ara-5
Length = 203
Score = 80.5 bits (197), Expect = 3e-16
Identities = 41/114 (35%), Positives = 67/114 (57%), Gaps = 3/114 (2%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQED 66
K + +GD VGK+CLL+ ++ +++ Y+ T+ +F V +G T+ L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTK 119
+ + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDEESFNNV-KQWLSEIDRYASDNVNKLLVGNK 122
>At1g16920 unknown protein
Length = 216
Score = 79.3 bits (194), Expect = 6e-16
Identities = 44/114 (38%), Positives = 65/114 (56%), Gaps = 3/114 (2%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
K V +GD VGK+ LL +T N F + T+ F+ + V+G V +WDTAGQE
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQER 74
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTK 119
Y + YRGA +L + + +A++ENV +W+ ELK H P + ++LVG K
Sbjct: 75 YRAITSAYYRGAVGALLVYDVTRRATFENVD-RWLKELKNHTDPNIVVMLVGNK 127
>At4g17530 ras-related small GTP-binding protein RAB1c
Length = 202
Score = 78.2 bits (191), Expect = 1e-15
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQED 66
K + +GD VGK+CLL+ + +++ Y+ T+ +F V +G T+ L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLGMS 123
+ + YRGA I+ + + S+ NV K+W+ E+ YA V +LVG K ++
Sbjct: 70 FRTITSSYYRGAHGIIVTYDVTDLESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 126
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.139 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,117,613
Number of Sequences: 26719
Number of extensions: 121928
Number of successful extensions: 414
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 91
length of query: 137
length of database: 11,318,596
effective HSP length: 89
effective length of query: 48
effective length of database: 8,940,605
effective search space: 429149040
effective search space used: 429149040
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)
Medicago: description of AC136504.11