BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136287.2 + phase: 0
(365 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28760 hypothetical protein 461 e-130
At5g16450 S-adenosylmethionine:2-demethylmenaquinone methyltrans... 30 1.6
At4g12170 unknown protein (At4g12170) 30 2.1
At1g56540 disease resistance protein, putative 30 2.1
At5g15920 putative protein 29 3.5
At1g77580 unknown protein 29 3.5
At1g10560 unknown protein 29 3.5
At4g05090 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE -like protein 29 4.6
At3g02770 putative S-adenosylmethionine:2-demethylmenaquinone me... 29 4.6
At5g09720 putative protein 28 6.0
At2g20970 hypothetical protein 28 6.0
At5g54260 DNA repair and meiosis protein Mre11 (emb|CAB50793.1) 28 7.9
At2g31060 putative GTP-binding protein 28 7.9
>At3g28760 hypothetical protein
Length = 357
Score = 461 bits (1187), Expect = e-130
Identities = 236/351 (67%), Positives = 288/351 (81%), Gaps = 8/351 (2%)
Query: 16 KSKKVWIWTKNKQVMTAAVERGWNTFIFPSNLPHLANDWSSIAVICPLFASEKEILDAQN 75
K+KKVWIWT K+VMT AVERGWNTFIF S+ L+N+WSSIA++ LF EK+++D
Sbjct: 12 KAKKVWIWTMCKEVMTVAVERGWNTFIFSSDNRKLSNEWSSIALMDTLFIEEKKVIDGTG 71
Query: 76 KKVATIFDVSTPEELERLRPEDEQAENIVVNLLDWQVIPAENIIAAFQNSQKTVFAISDN 135
VA++F+VSTPEEL L E+EQ ENIV++ LDW+ IPAEN++AA Q S+KTVFA+S+
Sbjct: 72 NVVASVFEVSTPEELRSLNIENEQIENIVLDFLDWKSIPAENLVAALQGSEKTVFAVSNT 131
Query: 136 ASEAQTFLEALEHGLDGIVLKVEDVEPMLELKEYFDRRTEESNVLNLTKATVTQIQVAGM 195
SEA+ FLEALEHGL GI+LK EDV+ +L+LKEYFD+R EES+ L+LT+AT+T++Q+ GM
Sbjct: 132 PSEAKLFLEALEHGLGGIILKSEDVKAVLDLKEYFDKRNEESDTLSLTEATITRVQMVGM 191
Query: 196 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESKLHCKQTF--SGECVHAYIAVPG 253
GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLES + F + VHAY+AVPG
Sbjct: 192 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIESRPFRVNAGPVHAYVAVPG 251
Query: 254 GRTSYLSELKSGKEVIVVDQQGRQRIAIVGRVKIESRPLILVEAKTDSDNQTISILLQNA 313
G+T YLSEL++G+EVIVVDQ+G+QR A+VGRVKIE RPLI+VEAK + SI+LQNA
Sbjct: 252 GKTCYLSELRTGREVIVVDQKGKQRTAVVGRVKIEKRPLIVVEAK--EEETVYSIILQNA 309
Query: 314 ETVALVCPVQGNKLLKTAFPVTSLKVGDEVLLRVQGGARHTGIEIQEFIVE 364
ETVALV P QG +TA PVTSLK GD+VL+R+QGGARHTGIEIQEFIVE
Sbjct: 310 ETVALVTPHQG----RTAVPVTSLKPGDQVLIRLQGGARHTGIEIQEFIVE 356
>At5g16450 S-adenosylmethionine:2-demethylmenaquinone
methyltransferase-like protein
Length = 166
Score = 30.4 bits (67), Expect = 1.6
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 237 KQTFSGECVHAYIAVPGGRTSYLSELKSGKEVIVVDQQGRQRIAIVG 283
+Q FSG V + G E K V+VVD G QR AI+G
Sbjct: 35 RQIFSGPVVTVKVFEDNGLIRQFIEEKGNGRVLVVDGGGSQRCAILG 81
>At4g12170 unknown protein (At4g12170)
Length = 128
Score = 30.0 bits (66), Expect = 2.1
Identities = 15/54 (27%), Positives = 25/54 (45%)
Query: 38 WNTFIFPSNLPHLANDWSSIAVICPLFASEKEILDAQNKKVATIFDVSTPEELE 91
WN+ + S +P + + C E E LD++ + + + V T EELE
Sbjct: 34 WNSLVIQSKVPVIVVFIAKDCAECGSLMPELEFLDSEYEYMLKFYTVDTDEELE 87
>At1g56540 disease resistance protein, putative
Length = 1096
Score = 30.0 bits (66), Expect = 2.1
Identities = 24/86 (27%), Positives = 33/86 (37%)
Query: 25 KNKQVMTAAVERGWNTFIFPSNLPHLANDWSSIAVICPLFASEKEILDAQNKKVATIFDV 84
+N V +A + W F +L D S+A ASEKE +A K I +
Sbjct: 987 RNNNVGSADEDDLWYIHEFSESLRKEEKDKDSVAKSESCGASEKEDEEATKDKDEDIAEH 1046
Query: 85 STPEELERLRPEDEQAENIVVNLLDW 110
S E + RP + NL W
Sbjct: 1047 SDSESISENRPRKRTMISATTNLKKW 1072
>At5g15920 putative protein
Length = 1053
Score = 29.3 bits (64), Expect = 3.5
Identities = 27/123 (21%), Positives = 53/123 (42%), Gaps = 25/123 (20%)
Query: 67 EKEILDAQNKKVATIFD--------------------VSTPEELERLRPEDEQAENIVVN 106
EK D++ KKV + D V+T +ELE L+ ++E + ++
Sbjct: 287 EKAETDSKCKKVKNLMDANGRNRCHLLEKEDEADARVVATYKELEELKKQEEHRQERILK 346
Query: 107 LLDWQVIPAENIIAAFQNSQKTVFAISDNASEAQTFLEALEHGLDGIVLKVEDVEPMLEL 166
+ ++ AE + ++ V + + +S+ + L H ++G + ED E +L
Sbjct: 347 ATE-DLVAAERELQNLPVYERPVAKLEELSSQ----VTELHHSINGKKNQKEDNEKLLSQ 401
Query: 167 KEY 169
K Y
Sbjct: 402 KRY 404
>At1g77580 unknown protein
Length = 779
Score = 29.3 bits (64), Expect = 3.5
Identities = 31/126 (24%), Positives = 53/126 (41%), Gaps = 20/126 (15%)
Query: 67 EKEILDAQNKKVATIFDVSTPEELERLRPEDEQAENIVVNLLDWQVIPAENIIAAFQNSQ 126
E+ ++ +N +V T E+LE+L E E+ ++ V + V+ EN +AA
Sbjct: 378 EEAVVHIENSEVLTSRTKELEEKLEKLEAEKEELKSEVKCNREKAVVHVENSLAA----- 432
Query: 127 KTVFAISDNASEAQTFLEALEHGLDGIVLKVEDVEPMLELKEYFDRRTEESNVLNLTKAT 186
+ ++ E + LE LE E VE E+K E V + +
Sbjct: 433 -EIEVLTSRTKELEEQLEKLE---------AEKVELESEVK-----CNREEAVAQVENSL 477
Query: 187 VTQIQV 192
T+I+V
Sbjct: 478 ATEIEV 483
>At1g10560 unknown protein
Length = 697
Score = 29.3 bits (64), Expect = 3.5
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 154 VLKVEDVEPMLELKEYFDRRTEES---NVLNLTKATVTQIQVAGMGDRVCVDL 203
++K V P+L+L D R +E+ +LNL+K + ++AG G ++ V++
Sbjct: 426 LVKAGAVTPLLKLLSSVDIRIQENAMAGILNLSKHVTGKSKIAGEGLKILVEI 478
>At4g05090 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE -like protein
Length = 397
Score = 28.9 bits (63), Expect = 4.6
Identities = 23/91 (25%), Positives = 43/91 (46%), Gaps = 9/91 (9%)
Query: 63 LFASEKEILDAQNKKVATIFDVSTPE----ELERLRPEDEQAENIVVNLLDWQVIPAENI 118
LF+S+++I++ ++ TI D EL +L P +V D + A N+
Sbjct: 71 LFSSKEKIVEKNDQTPVTIADFGVQALVSLELSKLFPSIP-----LVAEEDSHFVRANNL 125
Query: 119 IAAFQNSQKTVFAISDNASEAQTFLEALEHG 149
+++ + K+ +I DN LEA++ G
Sbjct: 126 VSSVVSEVKSKASIGDNHLSDADVLEAIDRG 156
>At3g02770 putative S-adenosylmethionine:2-demethylmenaquinone
methyltransferase
Length = 166
Score = 28.9 bits (63), Expect = 4.6
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 237 KQTFSGECVHAYIAVPGGRTSYLSELKSGKEVIVVDQQGRQRIAIVG 283
+Q FSG V + G + E K V+VVD G R AI+G
Sbjct: 35 RQIFSGPVVTVKVFEDNGLIRHFLEEKGNGRVLVVDGGGSLRCAILG 81
>At5g09720 putative protein
Length = 397
Score = 28.5 bits (62), Expect = 6.0
Identities = 38/128 (29%), Positives = 57/128 (43%), Gaps = 15/128 (11%)
Query: 83 DVSTPEELERLRPEDEQ-AENIVVNLLDWQVIPAENIIAAFQNSQKTVFAISDNASEAQT 141
D+ +ELE+L +DE AE + L PA + N T I S A++
Sbjct: 233 DLQIKDELEQLLEDDEDMAELYLSRKLAGASSPAIDS-GEHINWYPTSPTIGAKISRAKS 291
Query: 142 FL--EALEHGLDGIVLKVEDVEPMLELKEYFDRRTEESNVLNLTKATVTQIQVAGMGDRV 199
L A G D VE+VE +LEL+EY D E + LN+ Q ++ +
Sbjct: 292 HLVRSATVRGDDKN--DVEEVEMLLELREYVD---ETEDFLNI------QFEIILTAGSI 340
Query: 200 CVDLCSLM 207
CV + S++
Sbjct: 341 CVSVYSVV 348
>At2g20970 hypothetical protein
Length = 373
Score = 28.5 bits (62), Expect = 6.0
Identities = 19/68 (27%), Positives = 35/68 (50%), Gaps = 2/68 (2%)
Query: 126 QKTVFAISDNASEAQTFLEALEHGLDGIVLKVEDVEPMLELKEYFDRRTEESNVL--NLT 183
++T A+ + EA+T L + + V++ EDVE EL+E + E+ + L+
Sbjct: 281 RETYLAVQETIKEAKTHETYLINQNNRRVIRGEDVEGFTELREQVQQLAFEAEITAEELS 340
Query: 184 KATVTQIQ 191
ATV ++
Sbjct: 341 SATVELVE 348
>At5g54260 DNA repair and meiosis protein Mre11 (emb|CAB50793.1)
Length = 720
Score = 28.1 bits (61), Expect = 7.9
Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 32/190 (16%)
Query: 53 DWSSIAVICPLFASEKEILDAQNKKVATIFDVSTP--------EELERLRPEDEQAENI- 103
D+S I P +K + N + IF ++ ++ ERLRPE+ +NI
Sbjct: 368 DYSGFMTINPQRFGQKYVGKVANPQDILIFSKASKKGRSEANIDDSERLRPEELNQQNIE 427
Query: 104 ---VVNLLDWQVIPAENIIAAFQN----SQKTVF--AISDNASEAQTFL----EALEHGL 150
+ L +++P ++ A N K F + N E + L +A +
Sbjct: 428 ALVAESNLKMEILPVNDLDVALHNFVNKDDKLAFYSCVQYNLQETRGKLAKDSDAKKFEE 487
Query: 151 DGIVLKV-EDVEPMLELKEYFDRRTEESNVL-------NLTKATVTQIQVAGMGDRVCVD 202
D ++LKV E +E LK+ R T S L NLTK + + D
Sbjct: 488 DDLILKVGECLEE--RLKDRSTRPTGSSQFLSTGLTSENLTKGSSGIANASFSDDEDTTQ 545
Query: 203 LCSLMRPGEG 212
+ L P G
Sbjct: 546 MSGLAPPTRG 555
>At2g31060 putative GTP-binding protein
Length = 664
Score = 28.1 bits (61), Expect = 7.9
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 154 VLKVEDVEPMLELKEYFDRRTEESNVLNLTK---ATVTQIQVAGMGDRVCVDLCSLMRPG 210
V++V D L + + EE+ V+ L K T+ I AG GD +C + L P
Sbjct: 284 VVRVGDRVNGLRKTDSGSEKIEEAKVVKLMKKKGTTIVSIDAAGAGDIIC--MAGLTAPS 341
Query: 211 EGLLVGS 217
G V S
Sbjct: 342 IGHTVAS 348
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.317 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,851,412
Number of Sequences: 26719
Number of extensions: 322182
Number of successful extensions: 937
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 13
length of query: 365
length of database: 11,318,596
effective HSP length: 101
effective length of query: 264
effective length of database: 8,619,977
effective search space: 2275673928
effective search space used: 2275673928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC136287.2