BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136141.8 - phase: 0
(339 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14640 putative retroelement pol polyprotein 116 2e-26
At2g05610 putative retroelement pol polyprotein 113 2e-25
At3g11970 hypothetical protein 110 8e-25
At1g36590 hypothetical protein 110 8e-25
At2g07660 putative retroelement pol polyprotein 89 4e-18
At2g10780 pseudogene 85 6e-17
At3g31970 hypothetical protein 84 1e-16
At3g29490 hypothetical protein 83 2e-16
At1g35370 hypothetical protein 82 4e-16
At4g16910 retrotransposon like protein 81 7e-16
At2g14650 putative retroelement pol polyprotein 81 9e-16
At2g04670 putative retroelement pol polyprotein 77 1e-14
At2g06470 putative retroelement pol polyprotein 77 2e-14
At4g03840 putative transposon protein 73 2e-13
At4g10580 putative reverse-transcriptase -like protein 70 2e-12
At4g07830 putative reverse transcriptase 52 6e-07
At2g06890 putative retroelement integrase 50 2e-06
At2g06190 putative Ty3-gypsy-like retroelement pol polyprotein 50 2e-06
At3g31480 hypothetical protein 49 4e-06
At4g08100 putative polyprotein 49 5e-06
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 116 bits (291), Expect = 2e-26
Identities = 64/147 (43%), Positives = 90/147 (60%), Gaps = 2/147 (1%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPF+ALYGRPP I Y G +L+ +A + +L +K++L + M A+ +
Sbjct: 733 MTPFQALYGRPPSPIPAYELGSVVCGELNEQMAARDELLAELKQHLVTANNCMKQQADSR 792
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
+D +F VG V LR+Q YRQ T+ RR+S KL+ R+YGPF + + G VAY L LP +R
Sbjct: 793 LRDVSFQVGDWVLLRIQPYRQKTLFRRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEGTR 852
Query: 121 IHPVIHVSQLREYHGQ-DPD-GHFRPI 145
IHPV HVS L+ + G +PD G P+
Sbjct: 853 IHPVFHVSLLKPWVGDGEPDMGQLPPL 879
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 113 bits (282), Expect = 2e-25
Identities = 56/131 (42%), Positives = 88/131 (66%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTP+EA+YG+PPP Y+ G + V + ++ E ++ +K +L R++ RM LA+Q
Sbjct: 625 MTPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQLADQH 684
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
+ F VG V+++LQ YRQ +V R++ KL+ +Y+GP+ ++ R G VAY+L LP +S+
Sbjct: 685 ITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPANSQ 744
Query: 121 IHPVIHVSQLR 131
+HPV HVSQLR
Sbjct: 745 VHPVFHVSQLR 755
>At3g11970 hypothetical protein
Length = 1499
Score = 110 bits (276), Expect = 8e-25
Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPFE +YG+ PP Y+ G + V + +L E +L +K +L R++ RM A+Q
Sbjct: 1297 MTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHRMKQFADQH 1356
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R + F +G V+++LQ YRQ +V R + KL+ +Y+GP+ I+ R G VAY+L LP S+
Sbjct: 1357 RTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPSYSQ 1416
Query: 121 IHPVIHVSQLREYHGQ-DPDGHFRPIPPEVANNLFNESPE 159
+HPV HVSQL+ G H P V ++F + PE
Sbjct: 1417 VHPVFHVSQLKVLVGNVSTTVHL----PSVMQDVFEKVPE 1452
>At1g36590 hypothetical protein
Length = 1499
Score = 110 bits (276), Expect = 8e-25
Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPFE +YG+ PP Y+ G + V + +L E +L +K +L R++ RM A+Q
Sbjct: 1297 MTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHRMKQFADQH 1356
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R + F +G V+++LQ YRQ +V R + KL+ +Y+GP+ I+ R G VAY+L LP S+
Sbjct: 1357 RTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPSYSQ 1416
Query: 121 IHPVIHVSQLREYHGQ-DPDGHFRPIPPEVANNLFNESPE 159
+HPV HVSQL+ G H P V ++F + PE
Sbjct: 1417 VHPVFHVSQLKVLVGNVSTTVHL----PSVMQDVFEKVPE 1452
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 88.6 bits (218), Expect = 4e-18
Identities = 63/166 (37%), Positives = 90/166 (53%), Gaps = 19/166 (11%)
Query: 1 MTPFEALYGRP-------PPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRM 53
M+P+EALYGR P + G T V D T ++ + +KE +R K
Sbjct: 770 MSPYEALYGRACRTPLCWTPVGERRLFGPTIV---DETTERMKFLKIKLKEAQDRQK--- 823
Query: 54 GTLANQKRKDCTFVVGQLVWLRLQLYRQHTVHRRTS-PKLAKRYYGPFLILRRIGPVAYE 112
+ AN++RK+ F VG LV+L+ Y+ R TS KL+ RY GP+ ++ R+G VAY+
Sbjct: 824 -SYANKRRKELEFQVGDLVYLKAMTYKG--AGRFTSRKKLSPRYVGPYKVIERVGAVAYK 880
Query: 113 LDLPPSSRI-HPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNES 157
LDLPP + H V HVSQLR+Y D + IPP + N+ E+
Sbjct: 881 LDLPPKLNVFHNVFHVSQLRKYL-SDQEESVEDIPPGLKENMTVEA 925
>At2g10780 pseudogene
Length = 1611
Score = 84.7 bits (208), Expect = 6e-17
Identities = 62/166 (37%), Positives = 89/166 (53%), Gaps = 19/166 (11%)
Query: 1 MTPFEALYGRP-------PPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRM 53
M+P+EALYGR P + G T V D T ++ + +KE +R K
Sbjct: 1378 MSPYEALYGRACRTPLCWTPVGERRLFGPTIV---DETTERMKFLKIKLKEAQDRQK--- 1431
Query: 54 GTLANQKRKDCTFVVGQLVWLRLQLYRQHTVHRRTS-PKLAKRYYGPFLILRRIGPVAYE 112
+ AN++RK+ F VG LV+L+ Y+ R TS KL+ RY GP+ ++ R+G VAY+
Sbjct: 1432 -SYANKRRKELEFQVGDLVYLKAMTYKG--AGRFTSRKKLSPRYVGPYKVIERVGAVAYK 1488
Query: 113 LDLPPS-SRIHPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNES 157
LDLPP + H V HVSQLR+ D + IPP + N+ E+
Sbjct: 1489 LDLPPKLNAFHNVFHVSQLRKCL-SDQEESVEDIPPGLKENMTVEA 1533
>At3g31970 hypothetical protein
Length = 1329
Score = 84.0 bits (206), Expect = 1e-16
Identities = 52/141 (36%), Positives = 79/141 (55%), Gaps = 4/141 (2%)
Query: 1 MTPFEALYGRPPPSIRNYVR-GHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQ 59
M PFEALYGRP + + + G ++ D L E I +K N++ ++ R + A++
Sbjct: 1119 MAPFEALYGRPCRTPLCWTQVGERSIYGADYVLETTERI-RVLKLNMKEAQDRQRSYADK 1177
Query: 60 KRKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSS 119
+R++ F VG V+L++ + R + KL RY GPF I+ R+GPVAY L+LP
Sbjct: 1178 RRRELEFEVGDRVYLKMAMLRGPN-RSISETKLTPRYMGPFRIVERVGPVAYRLELPDVM 1236
Query: 120 R-IHPVIHVSQLREYHGQDPD 139
R H V HVS LR+ +D +
Sbjct: 1237 RAFHKVFHVSMLRKCLHKDDE 1257
>At3g29490 hypothetical protein
Length = 438
Score = 82.8 bits (203), Expect = 2e-16
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Query: 1 MTPFEALYGRPPPSIRNYVR-GHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQ 59
M PFEALYGRP + + + G ++ D E I +K N++ ++ R + A++
Sbjct: 131 MAPFEALYGRPCRTPLCWTQVGERSIYGADYVQETTERI-RVLKLNMKEAQDRQWSYADK 189
Query: 60 KRKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSS 119
+R++ F VG V+L++ + R + KL+ RY GPF I+ R+GPVAY L+LP
Sbjct: 190 RRRELEFEVGDRVYLKMAMLRGPN-RSISETKLSLRYMGPFRIVERVGPVAYMLELPDVM 248
Query: 120 R-IHPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNES 157
R H V HVS LR+ +D D IP ++ N+ E+
Sbjct: 249 RAFHKVFHVSMLRKCLHKD-DEVLAKIPEDLQPNMTLEA 286
>At1g35370 hypothetical protein
Length = 1447
Score = 82.0 bits (201), Expect = 4e-16
Identities = 42/109 (38%), Positives = 68/109 (61%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPFE +YG+ PP Y+ G + V + +L E++L +K +L R++ RM A+Q
Sbjct: 1268 MTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHLMRAQHRMKQFADQH 1327
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPV 109
R + TF +G V+++LQ YRQ +V R + KL+ +Y+GP+ I+ + G V
Sbjct: 1328 RTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCGEV 1376
>At4g16910 retrotransposon like protein
Length = 687
Score = 81.3 bits (199), Expect = 7e-16
Identities = 54/159 (33%), Positives = 83/159 (51%), Gaps = 5/159 (3%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
M+P+EALYGR + + L + + +K L+ ++ R + AN++
Sbjct: 462 MSPYEALYGRAGRTPLCWTPVGERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKSYANKR 521
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTS-PKLAKRYYGPFLILRRIGPVAYELDLPPS- 118
RK+ F VG LV+L+ Y+ R TS KL RY GP+ ++ R+G VAY+LDLPP
Sbjct: 522 RKELEFQVGDLVYLKAMTYKG--AGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKL 579
Query: 119 SRIHPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNES 157
H V HVSQLR+ + + +PP + N+ E+
Sbjct: 580 DAFHNVFHVSQLRKCLSEQEES-MEDVPPGLKENMTVEA 617
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 80.9 bits (198), Expect = 9e-16
Identities = 57/160 (35%), Positives = 85/160 (52%), Gaps = 7/160 (4%)
Query: 1 MTPFEALYGRP--PPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLAN 58
M PFEALY RP P V G ++ D E I +K N++ ++ R + A+
Sbjct: 1121 MAPFEALYERPCRTPLCLTQV-GERSIYGADYVQETTERI-RVLKLNMKEAQDRQRSYAD 1178
Query: 59 QKRKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPS 118
++R++ F VG V+L++ + R + KL+ RY GPF I+ R+GPVAY L+LP
Sbjct: 1179 KRRRELEFEVGDRVYLKMAMLRGPN-RSISETKLSPRYMGPFRIVERVGPVAYRLELPDV 1237
Query: 119 SR-IHPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNES 157
R H V HVS LR+ +D D IP ++ N+ E+
Sbjct: 1238 MRAFHKVFHVSMLRKCLHKD-DEVLAKIPEDLQPNMTLEA 1276
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 77.4 bits (189), Expect = 1e-14
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
M PFEALYGRP + + + + + + +K N++ ++ R + A+++
Sbjct: 1201 MAPFEALYGRPCWTPLRWTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYADKR 1260
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
R++ F VG V+L++ + R KL+ RY GPF I+ R+GPVAY L+LP R
Sbjct: 1261 RRELEFEVGDRVYLKMAMLRGPN-RSILETKLSPRYMGPFRIVERVGPVAYRLELPDVMR 1319
Query: 121 -IHPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNES 157
H V HV LR+ +D D IP ++ N+ E+
Sbjct: 1320 AFHKVFHVLMLRKCLHKD-DEVLVKIPEDLQPNMTLEA 1356
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 76.6 bits (187), Expect = 2e-14
Identities = 46/118 (38%), Positives = 69/118 (57%), Gaps = 5/118 (4%)
Query: 42 IKENLERSKQRMGTLANQKRKDCTFVVGQLVWLRLQLYRQHTVHRRTS-PKLAKRYYGPF 100
+K L+ + R + AN++RK+ F VG LV+L+ Y+ R TS KL+ RY GP+
Sbjct: 778 LKIKLKEAHDRQKSYANKRRKELEFQVGDLVYLKAMTYKG--AGRFTSRKKLSPRYVGPY 835
Query: 101 LILRRIGPVAYELDLPPS-SRIHPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNES 157
++ R+G VAY+LDLPP + H V HVSQLR+ D + +PP + N+ E+
Sbjct: 836 KVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCL-SDQEESVEDVPPGLKENMTVEA 892
>At4g03840 putative transposon protein
Length = 973
Score = 73.2 bits (178), Expect = 2e-13
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 42 IKENLERSKQRMGTLANQKRKDCTFVVGQLVWLRLQLYRQHTVHRRTS-PKLAKRYYGPF 100
+K L+ ++ R + AN++RK+ F V LV+L+ Y+ R TS KL+ RY GP+
Sbjct: 781 LKIKLKEAQDRQKSYANKRRKELEFQVEDLVYLKAMTYKG--AGRFTSRKKLSPRYVGPY 838
Query: 101 LILRRIGPVAYELDLPPS-SRIHPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNES 157
++ R+G VAY+LDLPP + H V HVSQLR+ + +PP + N+ E+
Sbjct: 839 KVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSNQEES-VEDVPPGLKENMTVEA 895
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 69.7 bits (169), Expect = 2e-12
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 39 LHTIKENLERSKQRMGTLANQKRKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYG 98
LH + N++ ++ R + A+++R++ F VG V+L++ + R + KL+ RY G
Sbjct: 1068 LHGVPLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPN-RSISETKLSPRYMG 1126
Query: 99 PFLILRRIGPVAYELDLPPSSR-IHPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNES 157
PF I+ R+ PVAY L+LP R H V HVS LR+ +D D IP ++ N+ E+
Sbjct: 1127 PFKIVERVEPVAYRLELPDVMRAFHKVFHVSMLRKCLHKD-DEALAKIPEDLQPNMTLEA 1185
>At4g07830 putative reverse transcriptase
Length = 611
Score = 51.6 bits (122), Expect = 6e-07
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
M PFE LYGRP ++ G ++ D + I + +K N++ ++ R + A+++
Sbjct: 386 MAPFEVLYGRPCRTLCWTQVGERSIYGAD-YVQEITERIRVLKLNMKEAQNRQRSYADKR 444
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSSR 120
RK+ F VG V + R +R+GPVA+ L+L R
Sbjct: 445 RKELEFEVGDSVSQDGHVARSE---------------------QRVGPVAFRLELSDVMR 483
Query: 121 -IHPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNES 157
H V HVS LR+ +D D IP ++ N+ E+
Sbjct: 484 AFHKVFHVSMLRKCLHKD-DEVLAKIPEDLQPNMTLEA 520
>At2g06890 putative retroelement integrase
Length = 1215
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/91 (32%), Positives = 46/91 (49%), Gaps = 5/91 (5%)
Query: 35 IEHILHTIKENLERSKQRMGTLANQKRKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAK 94
++ I + N+E + AN+ R++ F VG +VW+ L R+ + KL
Sbjct: 1024 VQQIHENARRNIEEKTKLYAKQANKGRREQIFEVGDMVWIHL---RKERFPAQRKSKLMP 1080
Query: 95 RYYGPFLILRRIGPVAYELDL--PPSSRIHP 123
R GPF I++RI AY+LDL P R +P
Sbjct: 1081 RIDGPFKIIKRINDNAYQLDLQDEPDLRSNP 1111
>At2g06190 putative Ty3-gypsy-like retroelement pol polyprotein
Length = 280
Score = 49.7 bits (117), Expect = 2e-06
Identities = 41/139 (29%), Positives = 60/139 (42%), Gaps = 11/139 (7%)
Query: 29 DTTLAHIEHILHTIKENLERSKQRMGTLANQKRKDCTFVVGQLVWLRLQLYRQHTVHRRT 88
+T I + +K LE + ++ A+++R+ F G V + L R+ T
Sbjct: 152 ETMAEEILVVKEVVKAKLEATGKKNKVAADKRRRFKVFKEGDDVMV---LLRKGRFAVGT 208
Query: 89 SPKLAKRYYGPFLILRRIGPVAYELDLPPSSRIHPVIHVSQLREYHGQDPDGHFRPIPPE 148
K+ R YGPF +LR+I AY + LP S I +V+ + EYH DG P
Sbjct: 209 YNKVKPRKYGPFKVLRKINDNAYVVALPKSMNISNTFNVADIHEYHA---DGVLYP---- 261
Query: 149 VANNLFNESPENNHQDTAE 167
NL S E D E
Sbjct: 262 -EENLRTSSSEVEETDVGE 279
>At3g31480 hypothetical protein
Length = 338
Score = 48.9 bits (115), Expect = 4e-06
Identities = 24/73 (32%), Positives = 42/73 (56%), Gaps = 1/73 (1%)
Query: 39 LHTIKENLERSKQRMGTLANQKRKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYG 98
+ +K N++ + R + A+ +R++ F VG V+L++ + Q KL+ +Y G
Sbjct: 136 IQVLKLNMKEAHDRQRSYADMRRREVEFEVGDRVYLKMDML-QSPKRFILETKLSPKYMG 194
Query: 99 PFLILRRIGPVAY 111
PF I+ R+GPVAY
Sbjct: 195 PFRIVERVGPVAY 207
>At4g08100 putative polyprotein
Length = 1054
Score = 48.5 bits (114), Expect = 5e-06
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 2 TPFEALYGRPPPSIRNYV------RGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGT 55
+PFE +YG P S + + R K D ++ +L NLE ++
Sbjct: 857 SPFEIVYGFKPTSPLDLIPLPLSERSSLDGKKKDDL---VQQVL-----NLEARTKQYKK 908
Query: 56 LANQKRKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDL 115
AN+ RK+ F G VW+ L+ R V S KL R GPF +L+RI AY+LDL
Sbjct: 909 YANKGRKEVIFNEGDQVWVHLRKKRFPEVR---SSKLMPRIDGPFKVLKRINNNAYKLDL 965
Query: 116 PPSS 119
+S
Sbjct: 966 QDTS 969
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.313 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,465,443
Number of Sequences: 26719
Number of extensions: 386080
Number of successful extensions: 1451
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1328
Number of HSP's gapped (non-prelim): 119
length of query: 339
length of database: 11,318,596
effective HSP length: 100
effective length of query: 239
effective length of database: 8,646,696
effective search space: 2066560344
effective search space used: 2066560344
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC136141.8