BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135848.1 + phase: 0 
         (64 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g38071 putative bHLH transcription factor (bHLH131)                 53  3e-08
At1g68810 putative bHLH transcription factor (bHLH030)                 40  2e-04
At2g41130 putative bHLH transcription factor (bHLH106)                 39  5e-04
At3g56770 putative HLH DNA binding protein                             33  0.035
At3g25710 putative bHLH transcription factor (bHLH032)                 32  0.077
At3g02875 IAA-amino acid hydrolase (ILR1)                              26  4.2
At2g30530 unknown protein                                              26  4.2
At4g36630 unknown protein                                              25  5.5
At2g36840 unknown protein                                              25  5.5
At1g27120 unknown protein                                              25  5.5

>At4g38071 putative bHLH transcription factor (bHLH131)
          Length = 256

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 27/57 (47%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 1   MSSISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVE-NESLGMLKSTLKVVMHKPS 56
           MS ++ ++ ++KAK V+ E++TVGGRT+  L+VQGV  NE L  LK +LK+V++  S
Sbjct: 182 MSEVAESMKAVKAKAVRAEIMTVGGRTKCALFVQGVNGNEGLVKLKKSLKLVVNGKS 238


>At1g68810 putative bHLH transcription factor (bHLH030)
          Length = 368

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 8/57 (14%)

Query: 6   RALLSMKAKVVKVEMVTVGGRTRSVLWVQGVENES--------LGMLKSTLKVVMHK 54
           + L +M+ K +K E+ TVGGR ++VL+V G E+          +G ++  LK VM K
Sbjct: 277 KTLKAMRLKTLKAEITTVGGRVKNVLFVTGEESSGEEVEEEYCIGTIEEALKAVMEK 333


>At2g41130 putative bHLH transcription factor (bHLH106)
          Length = 253

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 22/60 (36%), Positives = 35/60 (57%), Gaps = 4/60 (6%)

Query: 1   MSSISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVEN----ESLGMLKSTLKVVMHKPS 56
           +  +   L S+  K ++ EMVT+GGRTRSVL V   +     ES+  L++ LK ++ + S
Sbjct: 166 LPDLMEILKSLNMKTLRAEMVTIGGRTRSVLVVAADKEMHGVESVHFLQNALKSLLERSS 225


>At3g56770 putative HLH DNA binding protein
          Length = 230

 Score = 32.7 bits (73), Expect = 0.035
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 1   MSSISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVEN----ESLGMLKSTLKVVMHKPS 56
           +  +   L S++ + +  +M TVGGRTR+VL V   +     +S+  L++ LK ++ + S
Sbjct: 143 LKDLMETLKSLQMETLFADMTTVGGRTRNVLVVAADKEHHGVQSVNFLQNALKSLLERSS 202


>At3g25710 putative bHLH transcription factor (bHLH032)
          Length = 344

 Score = 31.6 bits (70), Expect = 0.077
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 1   MSSISRALLSMKAKVVKVEMVTVGGRTRSVLWV 33
           M  +  AL S++ + +K E+ TVGGR +++L++
Sbjct: 228 MHDVINALKSLRLRTLKAEIATVGGRVKNILFL 260


>At3g02875 IAA-amino acid hydrolase (ILR1)
          Length = 442

 Score = 25.8 bits (55), Expect = 4.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 13/45 (28%)

Query: 21  VTVGG--------RTRSVLWVQGVENESLGMLKSTLKVVMHKPSF 57
           VT+GG        +T++ ++V GV+NE+LG  K      +H P F
Sbjct: 366 VTMGGEDFSFFTQKTKAAIFVLGVKNETLGAGKP-----LHSPYF 405


>At2g30530 unknown protein
          Length = 371

 Score = 25.8 bits (55), Expect = 4.2
 Identities = 13/41 (31%), Positives = 22/41 (52%), Gaps = 2/41 (4%)

Query: 23  VGGRTRSVL--WVQGVENESLGMLKSTLKVVMHKPSFKMRQ 61
           +GG   +V+   +  VEN + G+++ T K +  KPS    Q
Sbjct: 176 IGGTIGTVVEEGITAVENRTAGIIQETRKKIKKKPSLTRNQ 216


>At4g36630 unknown protein
          Length = 1003

 Score = 25.4 bits (54), Expect = 5.5
 Identities = 13/41 (31%), Positives = 24/41 (57%), Gaps = 9/41 (21%)

Query: 7   ALLSMKAKVVKVEMVTVGGRTRSVLWVQGVENESLGMLKST 47
           ++LS KAK         GGR++ ++ ++G E+  +G+  ST
Sbjct: 821 SVLSSKAK---------GGRSKKIVAIEGAEDMRVGLSSST 852


>At2g36840 unknown protein
          Length = 410

 Score = 25.4 bits (54), Expect = 5.5
 Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 2/54 (3%)

Query: 4  ISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVENESLGMLKSTLKVVMHKPSF 57
          + R LL     +V+ ++ T G     V WV G  N    +LK  +++V   PSF
Sbjct: 37 LCRILLFFGLNIVRGDVSTDGKWCYLVFWVIGKPNTRWNLLK--MRLVEASPSF 88


>At1g27120 unknown protein
          Length = 657

 Score = 25.4 bits (54), Expect = 5.5
 Identities = 15/44 (34%), Positives = 22/44 (49%), Gaps = 2/44 (4%)

Query: 21  VTVGGRTRSVLWVQGVENES--LGMLKSTLKVVMHKPSFKMRQY 62
           + VGG +R   WV G E E+      K   +V +  P  KMR++
Sbjct: 64  MVVGGGSREANWVVGEEEEADPHRHFKDPGRVQLRLPERKMREF 107


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,024,349
Number of Sequences: 26719
Number of extensions: 24394
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 10
length of query: 64
length of database: 11,318,596
effective HSP length: 40
effective length of query: 24
effective length of database: 10,249,836
effective search space: 245996064
effective search space used: 245996064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)