BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135801.7 - phase: 0
(189 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40475 unknown protein 59 1e-09
At5g01790 putative protein 49 2e-06
At3g56260 unknown protein 43 1e-04
At1g06930 hypothetical protein 38 0.003
At1g21695 unknown protein 38 0.004
At1g30850 hypothetical protein 34 0.053
At1g22680 hypothetical protein 32 0.20
At1g77400 unknown protein 31 0.34
At3g30190 hypothetical protein 31 0.45
At1g56200 unknown protein 31 0.45
At1g14650 splicing factor, putative 31 0.45
At1g54780 unknown protein 30 0.58
At1g14640 splicing factor, putative 30 0.58
At3g19610 hypothetical protein 30 0.76
At1g71970 unknown protein 30 0.76
At5g65790 transcription factor-like protein 30 1.00
At4g11450 unknown protein 30 1.00
At2g31230 ethylene reponse factor-like AP2 domain transcription ... 30 1.00
At5g52380 unknown protein 29 1.3
At5g07820 putative protein 29 1.3
>At2g40475 unknown protein
Length = 193
Score = 59.3 bits (142), Expect = 1e-09
Identities = 62/190 (32%), Positives = 78/190 (40%), Gaps = 35/190 (18%)
Query: 6 IESNKILSRRSSVGCSSRISYYRSGEGVPFKWEMQPGIAKES--SPKEVLPPLTPPPKNL 63
I S I+ S V SSRI YY G VPF WE +PG K + S LPPLTPPP
Sbjct: 13 ISSKIIVKESSQVNSSSRIYYY-GGASVPFLWETRPGTPKHALFSESLRLPPLTPPPSYY 71
Query: 64 SLGLPKPSILELKKPASTMSKLKFWKKRVVKIKSKKPQEVCFHEDFDILSRLDCSSDSES 123
S +S+ S K K R +K + H +SR S S S
Sbjct: 72 S--------------SSSSSGNKLSKARTIKQTRFVKTLLSRH-----VSRPSFSWSSAS 112
Query: 124 MVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQ------VSRKPSTLGCFPMH 177
S SS+SSSS + R C SCS K+ VS P++ C+
Sbjct: 113 --SSSSSSYSSSSPPSKVEHRPRK-----CYSCSRSYVKEDDEEEIVSSSPTSTLCYKRG 165
Query: 178 ISRVLVSITR 187
S + S+ R
Sbjct: 166 FSSSMGSMKR 175
>At5g01790 putative protein
Length = 188
Score = 48.9 bits (115), Expect = 2e-06
Identities = 45/136 (33%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 17 SVGCSS-RISYYRSGEG-VPFKWEMQPGIAKE-SSPKEVLPPLTPPPKNLSLG---LPKP 70
S C S RI YY G VPF+WE PG K SS LPPLTPPP + S + +
Sbjct: 37 SAACPSFRIYYYDGAAGAVPFEWESHPGTPKHPSSELPTLPPLTPPPSHFSFSGDQIRRR 96
Query: 71 SILELKKPASTMSKLKFW-----KKRVVKIKSKKP----QEVCFHE-DFDILSRLDCSSD 120
S KK + + FW + K+ + P + V E ++D+
Sbjct: 97 SKKSTKKILALIPTRLFWLSGDHNGKAKKLSASSPPSLSERVLIDENEYDLF-----KFQ 151
Query: 121 SESMVSPRGSSFSSSS 136
+E V R SSF SS+
Sbjct: 152 TERNVMRRFSSFDSSA 167
>At3g56260 unknown protein
Length = 197
Score = 42.7 bits (99), Expect = 1e-04
Identities = 41/129 (31%), Positives = 54/129 (41%), Gaps = 25/129 (19%)
Query: 23 RISYYRSGEGVPFKWEMQPGIAKE--SSPKEVLPPLTPPPKNLSLGLPKPSILELKKPAS 80
R SYY G +PF WE +PG K S + PLTPPP S G IL + S
Sbjct: 15 RSSYY-GGASIPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSSG-----ILSTPRTQS 68
Query: 81 TMSKLKFWKKRVVKIKSKKPQEVCFHEDFDILSRLDCSSDSESMVSPRGSSFSSSSSSMS 140
K++SK + + F + S L S+ + S+SS+SSS S
Sbjct: 69 -------------KVRSKLSKFL----SFSMFSDLRRSNHGSKKTASSSFSWSSTSSSSS 111
Query: 141 LMKSTRSSL 149
S SL
Sbjct: 112 FSSSPPHSL 120
>At1g06930 hypothetical protein
Length = 169
Score = 38.1 bits (87), Expect = 0.003
Identities = 39/145 (26%), Positives = 49/145 (32%), Gaps = 14/145 (9%)
Query: 26 YYRSGEGVPFKWEMQPG----IAKESSPK----------EVLPPLTPPPKNLSLGLPKPS 71
Y S VPFKWE QPG ++K SS V PLTPPP
Sbjct: 25 YGGSSAAVPFKWESQPGTPRRLSKRSSSSGFNSDSDFNFPVSAPLTPPPSYFYASPSSTK 84
Query: 72 ILELKKPASTMSKLKFWKKRVVKIKSKKPQEVCFHEDFDILSRLDCSSDSESMVSPRGSS 131
+ KK + S L + V + L D S+ SM GSS
Sbjct: 85 HVSPKKTNTLFSSLLSKNRSVPSSPASSSSSSSSSVPSSPLRTSDLSNRRRSMWFESGSS 144
Query: 132 FSSSSSSMSLMKSTRSSLHSVCSSC 156
S+S S + + SC
Sbjct: 145 LDYGSNSAKSSGCYASLVKVLLRSC 169
>At1g21695 unknown protein
Length = 217
Score = 37.7 bits (86), Expect = 0.004
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 25 SYYRSGEGVPFKWEMQPGIAKESSPKEVLPPLTPPPKNLSLGLPKPSILELKKPASTMSK 84
S+ R G VPFKWE++PG+ K + L PPP N L S P+ + S
Sbjct: 7 SFKRPG-AVPFKWEIRPGVPKTRPGDDDPALLQPPPPNKLPPLKLKSTPPSNSPSPSSSS 65
Query: 85 LKFWKKRVVKIKSKKPQEVCFHEDFDILSRLDCSSDSESMVSPRGSSFSSSSS 137
F + R + P +L SDS+S S + + SSS
Sbjct: 66 SFFSESRSRPVSPFAPPP---------SFKLKSPSDSDSNCSASPTPYFRSSS 109
>At1g30850 hypothetical protein
Length = 300
Score = 33.9 bits (76), Expect = 0.053
Identities = 31/107 (28%), Positives = 52/107 (47%), Gaps = 11/107 (10%)
Query: 44 AKESSPKEVLPPLTPPPKNLSLGLPK-PSILELKKPAS------TMSKLKFWKKRVVKIK 96
A++ S + VLPP PPP++ ++ LP P + ++K S MSK +F +K + K +
Sbjct: 63 ARDDSFRIVLPPALPPPRDSTVPLPMLPEPMRVRKKLSHQESVIFMSKSRFAEKILYKEE 122
Query: 97 SKKPQEVCFH-EDFDILSRLDCSSDSESMVSP---RGSSFSSSSSSM 139
K C F + SS ++ + R SSF+ S+ S+
Sbjct: 123 DFKCNAFCLSLPGFGKNKLIRSSSKRQNSMEKKMIRASSFTGSTVSV 169
>At1g22680 hypothetical protein
Length = 185
Score = 32.0 bits (71), Expect = 0.20
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 12 LSRRSSVGCSSRISYYRSGE---------GVPFKWEMQPGIAKESS---PKEVLPPLTPP 59
+S R S+ SS S SG G+PF WE PG KE S E L L P
Sbjct: 26 ISTRRSLSSSSSNSLLFSGNSPATPLHPLGIPFSWEKLPGKPKEFSYHRKNESLSNLLPL 85
Query: 60 PKNLSLGLPKPSILELKKPAS 80
P + S P + PA+
Sbjct: 86 PPHWSNHSPNTRCKKNTSPAA 106
>At1g77400 unknown protein
Length = 232
Score = 31.2 bits (69), Expect = 0.34
Identities = 18/42 (42%), Positives = 23/42 (53%), Gaps = 5/42 (11%)
Query: 25 SYYRSGEGVPFKWEMQPGIAKE--SSPKEVLPPLTPPPKNLS 64
S+ R G +PF WE++PG+ K S P P PPK LS
Sbjct: 9 SFKRPGT-IPFSWEIRPGVPKTRMSQPGNTTP--LQPPKKLS 47
>At3g30190 hypothetical protein
Length = 263
Score = 30.8 bits (68), Expect = 0.45
Identities = 23/64 (35%), Positives = 30/64 (45%)
Query: 92 VVKIKSKKPQEVCFHEDFDILSRLDCSSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHS 151
+ K+ S EV + + + SS S S S SS SSSSSS S S+ S+ S
Sbjct: 1 MAKMNSSFSHEVTIDRRHKMTKQCNGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSS 60
Query: 152 VCSS 155
SS
Sbjct: 61 SSSS 64
Score = 30.4 bits (67), Expect = 0.58
Identities = 20/41 (48%), Positives = 22/41 (52%)
Query: 117 CSSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCS 157
C+ S S S SS SSSSSS S S+ SS S SS S
Sbjct: 24 CNGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSS 64
Score = 28.9 bits (63), Expect = 1.7
Identities = 22/59 (37%), Positives = 26/59 (43%)
Query: 124 MVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPSTLGCFPMHISRVL 182
M S SSSSSS S S+ SS S SS S +T S S F + + R L
Sbjct: 20 MTKQCNGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSFSSYFVVPLLRYL 78
Score = 28.5 bits (62), Expect = 2.2
Identities = 20/40 (50%), Positives = 22/40 (55%)
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCS 157
SS S S S SS SSSSSS S S+ +S S SS S
Sbjct: 28 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSFS 67
Score = 27.7 bits (60), Expect = 3.8
Identities = 20/40 (50%), Positives = 21/40 (52%)
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCS 157
SS S S S SS SSSSSS S S+ SS S S S
Sbjct: 29 SSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSFSS 68
>At1g56200 unknown protein
Length = 154
Score = 30.8 bits (68), Expect = 0.45
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 121 SESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPSTLGCFPMH 177
S++ VSP S+ SS S KS ++ + CSEG T+ V+R+ T+ P+H
Sbjct: 35 SQNRVSPL-SAVGLSSGLGSRRKSLLICHSAINAKCSEGQTQTVTRESPTITQAPVH 90
>At1g14650 splicing factor, putative
Length = 785
Score = 30.8 bits (68), Expect = 0.45
Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 4/62 (6%)
Query: 12 LSRRSSVGCSSRISYYRSGEGVPFKWEMQPGIAKESSPKEVLP---PLTPPPKNLSLGLP 68
+ R ++ S + G+GV PG A P+ +P PL PPP NL+L LP
Sbjct: 511 IGRTANQALSQNANGEEQGDGVYGDPNSFPGPAALPPPRPGVPIVRPLPPPP-NLALNLP 569
Query: 69 KP 70
+P
Sbjct: 570 RP 571
>At1g54780 unknown protein
Length = 285
Score = 30.4 bits (67), Expect = 0.58
Identities = 19/51 (37%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 48 SPKEVLPPLTPPPKNLSLGLPKPSILELKKPASTMSKLKFWKKRVVKIKSK 98
SP+ + PPL P P +L P L L KP +T S K R K +S+
Sbjct: 6 SPRALSPPLNPKPLSLHQTKPTSHSLSLSKP-TTFSGPKHLSTRFTKPESR 55
>At1g14640 splicing factor, putative
Length = 735
Score = 30.4 bits (67), Expect = 0.58
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 30 GEGVPFKWEMQPGIAKESSPKEVLPPLTP--PPKNLSLGLPKP 70
G+GV PG A P+ +P + P PP+NL+L LP+P
Sbjct: 517 GDGVYGDPNSFPGPAAFPPPRPGVPTVRPLPPPQNLALNLPRP 559
>At3g19610 hypothetical protein
Length = 612
Score = 30.0 bits (66), Expect = 0.76
Identities = 23/71 (32%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 110 DILSRLDCSSDSESMVSPRGSSFSSSSSSMSLMKST-----RSSLHSVCSSCSEGNTKQV 164
++ S ++ D+ESM+S SSFSS++ S + S R SL + +TK V
Sbjct: 169 NLSSVMEEKDDTESMISSCSSSFSSAARRRSWIGSADNRKRRDSLDPSMIKNHDHDTKHV 228
Query: 165 SRKPSTLGCFP 175
SR S+ P
Sbjct: 229 SRARSSSATSP 239
>At1g71970 unknown protein
Length = 225
Score = 30.0 bits (66), Expect = 0.76
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 15/66 (22%)
Query: 32 GVPFKWEMQPGIAKESSPK----------EVLPPLTPPPKNLSLGLPKPSILELKKPAST 81
GVPF WE PG K+ S + +L PL PP +N+S P+ + KP ++
Sbjct: 66 GVPFSWEQLPGKPKDYSHRLNNRRNNESSNLLLPL-PPHRNISF----PATGKKPKPNNS 120
Query: 82 MSKLKF 87
K F
Sbjct: 121 SKKNSF 126
>At5g65790 transcription factor-like protein
Length = 374
Score = 29.6 bits (65), Expect = 1.00
Identities = 28/114 (24%), Positives = 47/114 (40%), Gaps = 6/114 (5%)
Query: 47 SSPKEVLPPLTPPPKNLSLGLPKP---SILELKKPASTMSKLKFWKKRVVKIKSKKPQEV 103
SSP +LP L PP + LG+ +P + + + K K +VKI+ ++ +
Sbjct: 163 SSPWPLLPQLPPPHHQIPLGMMEPTSCNYYQTTPSCNLEQKPLITLKNMVKIEEEQERTN 222
Query: 104 CFHEDFDILSRLDCSSDSESMVSPR---GSSFSSSSSSMSLMKSTRSSLHSVCS 154
H D ++ S S+ ++ P GS + ST S L + S
Sbjct: 223 PDHHHQDSVTNPFDFSFSQLLLDPNYYLGSGGGGEGDFAIMSSSTNSPLPNTSS 276
>At4g11450 unknown protein
Length = 694
Score = 29.6 bits (65), Expect = 1.00
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 7/136 (5%)
Query: 38 EMQPGIAKESSPKEVLP---PLTPPPKNLSLGLPKPSILELKKPASTMSKLKFWKKRVVK 94
E GI E SP VLP P T K S L P E+ + +++ F + R
Sbjct: 2 EFGKGIDMEQSPNSVLPPPRPFTESEKRTSTRLKPPRRDEILRVKEGFTEISFRRYRSTS 61
Query: 95 IKSKKPQEVCFHEDFDILSRLDCSSDSE---SMVSPRGSSFSSSSSSMSLMKSTRSSLHS 151
K+ + + + ++ S +E + P+G S + +S S S
Sbjct: 62 CKNFPSKPLAMGDTTELRRGSVYQSSNELFKELREPQGRKDSKAKLELS-RSSDASFSFR 120
Query: 152 VCSSCSEGNTKQVSRK 167
V S +G+T++ K
Sbjct: 121 VVDSSRKGSTEKRPHK 136
>At2g31230 ethylene reponse factor-like AP2 domain transcription
factor
Length = 243
Score = 29.6 bits (65), Expect = 1.00
Identities = 30/85 (35%), Positives = 40/85 (46%), Gaps = 5/85 (5%)
Query: 92 VVKIKSKKPQEVCFHEDFDILSRLDCSSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHS 151
VV+ KK + V H+ + L + PRG SSSSSS S S+ SS S
Sbjct: 146 VVRESLKKMENVNLHDGGSPVMALKRKHSLRNR--PRGKKRSSSSSSSSSNSSSCSSSSS 203
Query: 152 VCSSCSEGNTKQ--VSRKPSTLGCF 174
SS S ++KQ V ++ TL F
Sbjct: 204 T-SSTSRSSSKQSVVKQESGTLVVF 227
>At5g52380 unknown protein
Length = 268
Score = 29.3 bits (64), Expect = 1.3
Identities = 20/65 (30%), Positives = 34/65 (51%), Gaps = 5/65 (7%)
Query: 45 KESSPKEVLPPLTP-PPKNLSLGLPKPSILELKKPASTMSKLK---FWKKRVVKIKSKKP 100
KE++P E+ P P PPK+ + K S+ + KKP S+ + + + +++ KP
Sbjct: 14 KEANP-ELFPKAEPTPPKDPNKKKKKKSLFKKKKPGSSTDRPQRTGSSTRHPLRVPGMKP 72
Query: 101 QEVCF 105
E CF
Sbjct: 73 GEGCF 77
>At5g07820 putative protein
Length = 561
Score = 29.3 bits (64), Expect = 1.3
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 51 EVLPPLTPPPKNLSLGLPKPSILELKKPASTMSKLKFWKKRVVKIKSKKPQEV 103
+V PP PPP + K +LE K ST + +KF KK VV+ + +V
Sbjct: 412 KVTPP--PPPTKQQMNFKKGKVLEPKPEDSTTTSIKF-KKIVVQEPKLRTSDV 461
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.313 0.128 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,501,183
Number of Sequences: 26719
Number of extensions: 198296
Number of successful extensions: 1107
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 91
length of query: 189
length of database: 11,318,596
effective HSP length: 94
effective length of query: 95
effective length of database: 8,807,010
effective search space: 836665950
effective search space used: 836665950
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC135801.7