BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135801.4 + phase: 0 
         (61 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g30220 snRNP Sm protein F - like                                   110  2e-25
At3g59810 U6 snRNA-associated Sm-like protein                          50  3e-07
At2g43810 putative small nuclear ribonucleoprotein polypeptide F       49  4e-07
At2g18740 small nuclear ribonucleoprotein E like protein               30  0.23
At5g27720 glycine rich protein - like                                  29  0.39
At4g30330 small nuclear ribonucleoprotein homolog                      28  1.1
At1g70080 unknown protein                                              25  5.6
At1g03330 unknown protein                                              25  5.6
At4g13910 putative disease resistance protein                          25  7.3
At5g44500 unknown protein                                              25  9.5

>At4g30220 snRNP Sm protein F - like
          Length = 88

 Score =  110 bits (274), Expect = 2e-25
 Identities = 51/61 (83%), Positives = 55/61 (89%)

Query: 1  MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
          MEYKG+L SVDSYMNLQL NTEEYI+G  TGNLGEILIRCNNVLY+RGVPEDEE+EDA  
Sbjct: 28 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 87

Query: 61 D 61
          D
Sbjct: 88 D 88


>At3g59810 U6 snRNA-associated Sm-like protein
          Length = 91

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 21/49 (42%), Positives = 30/49 (60%)

Query: 1  MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGV 49
          ++Y+G L  +D YMN+ +  TEEY+ G      G+  IR NNVLY+  V
Sbjct: 35 VDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTV 83


>At2g43810 putative small nuclear ribonucleoprotein polypeptide F
          Length = 91

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 19/46 (41%), Positives = 29/46 (62%)

Query: 1  MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYM 46
          ++Y+G L  +D YMN+ +  TEEY+ G      G+  +R NNVLY+
Sbjct: 35 VDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYI 80


>At2g18740 small nuclear ribonucleoprotein E like protein
          Length = 88

 Score = 30.0 bits (66), Expect = 0.23
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 1  MEYKGYLVSVDSYMNLQLANTEEY-IEGNFTGNLGEILIRCNNVLYM 46
          +  +G +   D YMNL L   EE  I+ N    LG IL++ +N+  M
Sbjct: 37 LRIEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLM 83


>At5g27720 glycine rich protein - like
          Length = 129

 Score = 29.3 bits (64), Expect = 0.39
 Identities = 22/63 (34%), Positives = 35/63 (54%), Gaps = 9/63 (14%)

Query: 3  YKGYLVSVDSYMNLQLANTEEYI----EGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDA 58
          Y G+LV+ D++MN+ L    E I    +G+    + E  IR N + Y+R VP DE I+  
Sbjct: 25 YNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPECYIRGNTIKYLR-VP-DEVIDKV 79

Query: 59 ADD 61
           ++
Sbjct: 80 QEE 82


>At4g30330 small nuclear ribonucleoprotein homolog
          Length = 88

 Score = 27.7 bits (60), Expect = 1.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 1  MEYKGYLVSVDSYMNLQLANTEEY-IEGNFTGNLGEILIRCNNVLYM 46
          +  +G +   D YMNL L   EE  I+      LG IL++ +N+  M
Sbjct: 37 LRIEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITLM 83


>At1g70080 unknown protein
          Length = 611

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 4   KGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILI 38
           KGYL   +      L + EEYIE       GE+L+
Sbjct: 436 KGYLQEAEWSNRGHLPSHEEYIEVGVASTAGEVLL 470


>At1g03330 unknown protein
          Length = 93

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 4  KGYLVSVDSYMNLQLANTEEYIEGNFTGNLG--EILIRCNNVLYMRGVPED 52
          +G L SVD Y+N++L NT    +  +   L      IR + V Y++ +P+D
Sbjct: 26 RGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ-LPKD 75


>At4g13910 putative disease resistance protein
          Length = 509

 Score = 25.0 bits (53), Expect = 7.3
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 2   EYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIED 57
           E+  +L +  S   L ++  +  IEG  +G L + LI+C ++ ++    ED  I D
Sbjct: 166 EFPTFLQNQTSLEYLDISANQ--IEGQLSGQLPKSLIKCTDLEFLN--VEDNRIND 217


>At5g44500 unknown protein
          Length = 254

 Score = 24.6 bits (52), Expect = 9.5
 Identities = 21/65 (32%), Positives = 30/65 (45%), Gaps = 15/65 (23%)

Query: 5  GYLVSVDSYMNLQLANTEEY-----IEGNFTGN--------LGEILIRCNNVLYM--RGV 49
          G  ++ D +MNL L + EE+      +GN   N        LG +L+R   V+ M   G 
Sbjct: 29 GKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGLVLLRGEEVISMTVEGP 88

Query: 50 PEDEE 54
          P  EE
Sbjct: 89 PPPEE 93


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.313    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,448,864
Number of Sequences: 26719
Number of extensions: 48985
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 10
length of query: 61
length of database: 11,318,596
effective HSP length: 37
effective length of query: 24
effective length of database: 10,329,993
effective search space: 247919832
effective search space used: 247919832
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)