BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135796.9 - phase: 0 /pseudo
         (911 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g45140 DNA-directed RNA polymerase subunit                         160  4e-39

>At5g45140 DNA-directed RNA polymerase subunit
          Length = 1194

 Score =  160 bits (404), Expect = 4e-39
 Identities = 96/243 (39%), Positives = 139/243 (56%), Gaps = 60/243 (24%)

Query: 1   MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAER--- 57
           ++V+KAMGME DQE+VQ++GRDPR+S  L+PSIEEC   G+ TQ QALDY+++K ++   
Sbjct: 267 IIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISY 326

Query: 58  --------QAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF-- 107
                   +A +ILR+ FLA+VPV   NFR KC YV VM+RR+++A+LNKDAMDDK +  
Sbjct: 327 GTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVG 386

Query: 108 -------KKIIGLCWKQTIGVIWPSYLSSI*GSF*VDDN*N*VCGGQIVG*ARQS*EV*L 160
                   ++I L ++     +    + ++       D+                     
Sbjct: 387 NKRLELSGQLISLLFEDLFKTMLSEAIKNV-------DH--------------------- 418

Query: 161 SYFQPDLSISGFQFT*FLWMCL*QLINRD---CITPGLERTLSTGNFDVKRFKMHKSGVT 217
                 +  S F F+        Q +N+D    I+ GLERTLSTGNFD+KRF+MH+ G+T
Sbjct: 419 -ILNKPIRASRFDFS--------QCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMT 469

Query: 218 QVI 220
           QV+
Sbjct: 470 QVL 472


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.365    0.160    0.668 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,025,007
Number of Sequences: 26719
Number of extensions: 651242
Number of successful extensions: 3074
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3071
Number of HSP's gapped (non-prelim): 2
length of query: 911
length of database: 11,318,596
effective HSP length: 108
effective length of query: 803
effective length of database: 8,432,944
effective search space: 6771654032
effective search space used: 6771654032
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 65 (29.6 bits)