BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135604.8 + phase: 0 /pseudo
(1050 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 270 3e-72
At1g25430 hypothetical protein 269 7e-72
At2g45230 putative non-LTR retroelement reverse transcriptase 265 8e-71
At1g47910 reverse transcriptase, putative 256 6e-68
At4g10830 putative protein 255 8e-68
At2g17910 putative non-LTR retroelement reverse transcriptase 253 4e-67
At4g26360 putative protein 253 5e-67
At1g24640 hypothetical protein 251 1e-66
At1g10160 putative reverse transcriptase 251 1e-66
At1g31100 hypothetical protein 251 2e-66
At2g01840 putative non-LTR retroelement reverse transcriptase 250 3e-66
At2g31080 putative non-LTR retroelement reverse transcriptase 248 1e-65
At2g25550 putative non-LTR retroelement reverse transcriptase 246 4e-65
At2g31520 putative non-LTR retroelement reverse transcriptase 245 1e-64
At3g31420 hypothetical protein 238 1e-62
At2g05200 putative non-LTR retroelement reverse transcriptase 238 2e-62
At4g09710 RNA-directed DNA polymerase -like protein 234 1e-61
At2g11240 pseudogene 230 4e-60
At2g28980 putative non-LTR retroelement reverse transcriptase 229 5e-60
At4g15590 reverse transcriptase like protein 221 1e-57
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 270 bits (690), Expect = 3e-72
Identities = 198/644 (30%), Positives = 305/644 (46%), Gaps = 69/644 (10%)
Query: 4 VCVCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFKGDGRSM 63
V + GDFNT+ ++ER G ++ D F ++I D LIDL G KFTW +G
Sbjct: 697 VVIGGDFNTIVRLDERSGGNG-RLSSDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERF 755
Query: 64 ---RRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEE---NWGPRPVRLLKCW 117
+RLDR L + W + SDH P+ + + E N G RP R W
Sbjct: 756 FVAKRLDRVLCCAHARLKWQEASVLHLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEAAW 815
Query: 118 QDMPGYIDFIREKWVFFQVSGWGGHV-LKEKLKLMKVALKDWHAANTHNLPSKIAELKI* 176
PG+ + + ++ W + E LK+ + L D H ++ +L K EL
Sbjct: 816 LSHPGFKELL--------LTSWNKDISTPEALKVQE--LLDLHQSD--DLLKKEEELL-- 861
Query: 177 QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHS 236
K + L +EE+ + Q+SR W GD N+KFFH+
Sbjct: 862 ------KDFDVVLEQEEV-------------------VWMQKSREKWFVHGDRNTKFFHT 896
Query: 237 VLAARRRLNSLSSILV-DGVVVEGVQPFRQAVFTHFKNHF----LDPRLER-PGVGHLQF 290
RRR N + + DG + Q ++K + LD +E+ P G F
Sbjct: 897 STIIRRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLPQEG---F 953
Query: 291 RKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTE 350
LS + LTKPFS E++ A+ +K+PGPDG F++ W + + +FV +
Sbjct: 954 TALSEADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMD 1013
Query: 351 FHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVV 410
F +G + N + LI KV P+ + +FRPISL ++K + K++ RL+ VI ++
Sbjct: 1014 FFSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLI 1073
Query: 411 SEAQSAFVKNRQILDGILIAN*VVDEARKLK--KYLLLFKVDFAKAYDSVDWGYLDEVMG 468
AQ++F+ R D I++ VV R+ K K +L K+D KAYD + W L++ +
Sbjct: 1074 GPAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLK 1133
Query: 469 SMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVL 528
+ P W +WI +CV + +L NG TD F RGLRQGDPLSP+LF+L L L
Sbjct: 1134 AAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHL 1193
Query: 529 MKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLK 588
+++ + A + ++ ++ +SH+ FADD +L S +R LR L F SG K
Sbjct: 1194 IESSIAAKKWKPIKISQS-GPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQK 1252
Query: 589 VNFHKSSL---------VGVNINDSWLSEAASVLGCKVVKIPFL 623
V+ KS + +G I++ +A LG K + +P L
Sbjct: 1253 VSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLG-KYLGVPIL 1295
>At1g25430 hypothetical protein
Length = 1213
Score = 269 bits (687), Expect = 7e-72
Identities = 186/633 (29%), Positives = 311/633 (48%), Gaps = 17/633 (2%)
Query: 6 VCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFKGDGRS--M 63
V GDFN V + +E + V + F D + L DL G FTW+ +
Sbjct: 141 VLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDLRYKGNTFTWWNKSHTTPVA 200
Query: 64 RRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENW-GPRPVRLLKCWQDMPG 122
+++DR L++ W ++P+ + + SDH + ++E + RP +
Sbjct: 201 KKIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEETSIKAKRPFKFFNYLLKNLD 260
Query: 123 YIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDS 182
+++ +R+ W V G + +KLK +K +KD+ N L + E
Sbjct: 261 FLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQD 320
Query: 183 KGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVLAARR 242
+ + EL H L+ S Q+SR++W +GD N+K+FH + AR
Sbjct: 321 RTLADPTPINASFELEA-ERKWHILTAAEESFFRQKSRISWFAEGDGNTKYFHRMADARN 379
Query: 243 RLNSLSSI------LVDGVVVEGVQPFRQAVFTHFKNHFLDPRL-ERPGVGHLQFRKLSY 295
NS+S++ LVD EG+ + F +DP L E+ + L + S
Sbjct: 380 SSNSISALYDGNGKLVDSQ--EGILDLCASYFGSLLGDEVDPYLMEQNDMNLLLSYRCSP 437
Query: 296 LERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNG 355
+ L FS ++I+AA++ KS GPDG FF W + ++ + EF +G
Sbjct: 438 AQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSG 497
Query: 356 KLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQS 415
L K N+T I LIPK+ +P ++FRPIS + ++YK++A++L +RL++++ V+S AQS
Sbjct: 498 CLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQS 557
Query: 416 AFVKNRQILDGILIAN*VVDEARKLK-KYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFPV 474
AF+ R + + +L+A +V + KVD KA+DSV W ++ + +++ P
Sbjct: 558 AFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPE 617
Query: 475 VWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVD 534
+ WI +C+ T T +V +NG F +GLRQGDPLSP+LF+LA + L+ + +
Sbjct: 618 KFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYE 677
Query: 535 AGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKS 594
+G+ + +A ++ +SHL FADD ++ + ++ + L F + SGLKVN KS
Sbjct: 678 SGLI--HYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKS 735
Query: 595 SLVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
L +N S A + G + +P YLGL
Sbjct: 736 HLYLAGLN-QLESNANAAYGFPIGTLPIRYLGL 767
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 265 bits (678), Expect = 8e-71
Identities = 185/635 (29%), Positives = 314/635 (49%), Gaps = 31/635 (4%)
Query: 8 GDFNTVRSVEERRSVRG-SQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF--KGDGRSMR 64
GDFN + V+ + G ++ C F + L ++ SG +F+W+ + D
Sbjct: 135 GDFNEL--VDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNRNDELVQC 192
Query: 65 RLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGP-RPVRLLKCWQDMPGY 123
RLDR + + W ++P + SDH P++ ++ +NW + K W G+
Sbjct: 193 RLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKWAGFKYDKRWVQREGF 252
Query: 124 IDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDSK 183
D + W Q S ++ EK+ + + W + + +I EL Q LD+
Sbjct: 253 KDLLCNFWS--QQSTKTNALMMEKIASCRREISKWKRVSKPSSAVRIQEL---QFKLDAA 307
Query: 184 GEEEQLSEEELGELHG-ISTDIHSLSRLITSICWQQ-SRLNWLRDGDANSKFFHSVLAAR 241
++ EL L +S + ++ + WQ+ SR+ W+R+GD N+K+FH+ R
Sbjct: 308 TKQIPFDRRELARLKKELSQEYNNEEQF-----WQEKSRIMWMRNGDRNTKYFHAATKNR 362
Query: 242 RRLNSLSSIL-VDGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRKLSYLE--- 297
R N + ++ +G + + +FK F E G + L+ L
Sbjct: 363 RAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFAS---EDVGYTVEELENLTPLVSDQ 419
Query: 298 -RGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGK 356
L P +++E++ A + + K PGPDG+N ++ FW + + V F R+G
Sbjct: 420 MNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGS 479
Query: 357 LAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQSA 416
+ +G+N T I LIPK+ + + +FRPISL +YK++ K++ANRL++++ S++SE Q+A
Sbjct: 480 IEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAA 539
Query: 417 FVKNRQILDGILIAN*V---VDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFP 473
FVK R I D ILIA+ + + K + + K D +KAYD V+W +L++ M + F
Sbjct: 540 FVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFA 599
Query: 474 VVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALV 533
W + I ECV + VL+NG+P E RGLRQGDPLSP+LF++ L ++++
Sbjct: 600 DHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAE 659
Query: 534 DAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHK 593
TG +V R + +SHL FADD++ + + + + + SG +VN+ K
Sbjct: 660 QKNQITGLKVARG-APPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLK 718
Query: 594 SSL-VGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
SS+ G +I++ LG + +YLGL
Sbjct: 719 SSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGL 753
Score = 47.0 bits (110), Expect = 6e-05
Identities = 35/111 (31%), Positives = 47/111 (41%), Gaps = 12/111 (10%)
Query: 890 DRWLWVPNHDDGYSVRGVYDMLTS--------QE--QPQLHHNMELIWHK*VPLKVSILA 939
DR+ W + YSV+ Y ++T QE QP L + IW VP K+
Sbjct: 1008 DRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFL 1067
Query: 940 WRLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALW 990
WR + + L SNLA R + + CV + E VNHL C W
Sbjct: 1068 WRCVNNCLSVASNLAYRHL--AREKSCVRCPSHGETVNHLLFKCPFARLTW 1116
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 256 bits (653), Expect = 6e-68
Identities = 181/544 (33%), Positives = 274/544 (50%), Gaps = 18/544 (3%)
Query: 92 SDHCPILLSV-DEENWGPRPVRLLKCWQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKL 150
SDH P++ ++ D+ G + R K W G ++ I + W SG+ EKL
Sbjct: 4 SDHSPVIATIADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLD--SGFREGQFVEKLTN 61
Query: 151 MKVALKDWHAANTHNLPSKIAELKI*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRL 210
+ A+ W + I +LK A LD ++ S EE+ EL + + R
Sbjct: 62 CRRAISKWRKSLIPFGRQTIEDLK---AELDVAQRDDDRSREEITEL---TLRLKEAYRD 115
Query: 211 ITSICWQQSRLNWLRDGDANSKFFHSVLAARRRLNSLSSILVD-GVVVEGVQPFRQAVFT 269
+Q+SR W++ GD NSKFFH++ RR N ++ + + G+ + +
Sbjct: 116 EEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVS 175
Query: 270 HFKNHFL--DPRLERPGVGHLQFRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDG 327
+F+N F +P++ +G +Q + LT +E E++AA++ K+PGPDG
Sbjct: 176 YFQNLFTTANPQVFDEALGEVQVLITDRIN-DLLTADATECEVRAALFMIHPEKAPGPDG 234
Query: 328 INLGFFKSFWPEIKTDLVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLV 387
+ FF+ W IK+DL+ V F + G K +N+T I LIPK P + E RPISL
Sbjct: 235 MTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLC 294
Query: 388 GSMYKILAKILANRLRQVIGSVVSEAQSAFVKNRQILDGILIAN*VVDEAR---KLKKYL 444
YK+++KIL RL+ V+ +++SE QSAFV R I D ILIA + R K
Sbjct: 295 NVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKF 354
Query: 445 LLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLE 504
+ K D +KAYD V+W +++ ++ M F W WI C+ T VL+NG P E
Sbjct: 355 MAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPE 414
Query: 505 RGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIG 564
RGLRQGDPLSP+LF+L L ++ + TG +V S VSHL FADD+L
Sbjct: 415 RGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVA-TPSPAVSHLLFADDSLFFC 473
Query: 565 NKSWANVRALRAGLVMFEAMSGLKVNFHKSSL-VGVNINDSWLSEAASVLGCKVVKIPFL 623
+ + L +E++SG ++NF KSS+ G + DS ++ +LG +
Sbjct: 474 KANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGS 533
Query: 624 YLGL 627
YLGL
Sbjct: 534 YLGL 537
Score = 40.0 bits (92), Expect = 0.007
Identities = 23/76 (30%), Positives = 32/76 (41%), Gaps = 2/76 (2%)
Query: 917 PQLHHNMELIWHK*VPLKVSILAWRLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDV 976
P L IW P K+ W++L +P NL RGIL + CVS + E +
Sbjct: 819 PDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKG--CVSCGASEESI 876
Query: 977 NHLFLSCVTFSALWPM 992
NH C +W +
Sbjct: 877 NHTLFQCHPARQIWAL 892
>At4g10830 putative protein
Length = 1294
Score = 255 bits (652), Expect = 8e-68
Identities = 196/651 (30%), Positives = 326/651 (49%), Gaps = 48/651 (7%)
Query: 1 NNKVCVCGDFNTVRSVEERRSVRGSQVVDDCT--PFNDFIEDRVLIDLLLSGRKFTWFKG 58
N+ + GDFN + S E+ G D+ T F + + L D+ G +F+W G
Sbjct: 489 NDPWILIGDFNEILSNNEKI---GGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWV-G 544
Query: 59 DGRSMRR---LDRFLLSVEWCMVWPNC-IQVAQLRGLSDHCPILLSVDE-ENWGPRPVRL 113
+ S LDR ++ E ++P ++ + G SDH P+ LS+++ E RP R
Sbjct: 545 ERHSHTVKCCLDRAFINSEGAFLFPFAELEFLEFTG-SDHKPLFLSLEKTETRKMRPFRF 603
Query: 114 LKCWQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAEL 173
K ++P + +++ W ++G H L ++++ + A+ + N +I +L
Sbjct: 604 DKRLLEVPHFKTYVKAGWNK-AINGQRKH-LPDQVRTCRQAMAKLKHKSNLNSRIRINQL 661
Query: 174 KI*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKF 233
QA+LD ++ E + I ++ R Q+SR W+++GD N++F
Sbjct: 662 ---QAALDKA--MSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEF 716
Query: 234 FHSVLAARRRLNSLSSIL-VDGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRK 292
FH+ R +N L +I +G++ G + + H + F V R
Sbjct: 717 FHACTKTRFSVNRLVTIKDEEGMIYRG----DKEIGVHAQEFFTK-------VYESNGRP 765
Query: 293 LSYLERGG------------LTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEI 340
+S ++ G LTK S+ EI A+ K+PGPDG+ F+KS W +
Sbjct: 766 VSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIV 825
Query: 341 KTDLVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILAN 400
D+++ V F R + + IN T I +IPK+ +P++L+++RPI+L +YKI++K L
Sbjct: 826 GPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVE 885
Query: 401 RLRQVIGSVVSEAQSAFVKNRQILDGILIAN*VVDEARKLKKY---LLLFKVDFAKAYDS 457
RL+ + ++VS++Q+AF+ R + D ++IA+ ++ + K+ + K D +KAYD
Sbjct: 886 RLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDR 945
Query: 458 VDWGYLDEVMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFL 517
V+W +L+ M F W KWI V + SVLVNG P +RG+RQGDPLSP+L
Sbjct: 946 VEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYL 1005
Query: 518 FLLAA*GLNVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAG 577
F+L A LN L+K V G G R+G V+HLQFADD+L + N +AL+
Sbjct: 1006 FILCADILNHLIKNRVAEGDIRGIRIGNG-VPGVTHLQFADDSLFFCQSNVRNCQALKDV 1064
Query: 578 LVMFEAMSGLKVNFHKSSLV-GVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
++E SG K+N KS + G ++ + + ++LG + YLGL
Sbjct: 1065 FDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGL 1115
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 253 bits (646), Expect = 4e-67
Identities = 198/629 (31%), Positives = 303/629 (47%), Gaps = 40/629 (6%)
Query: 5 CVCGDFNTVRSVEERRS-VRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF--KGDGR 61
C+ GDFN +RS +E+ R S C F + + + +L +G FTW + D
Sbjct: 110 CLIGDFNDIRSNDEKLGGPRRSPSSFQC--FEHMLLNCSMHELGSTGNSFTWGGNRNDQW 167
Query: 62 SMRRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPR-PVRLLKCWQDM 120
+LDR + W ++PN Q + SDH P+L+ +N R R K D
Sbjct: 168 VQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQFRYDKRLDDD 227
Query: 121 PGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASL 180
P I+ I W G H L + A+ W ++ N S+I L+ L
Sbjct: 228 PYCIEVIHRSWN--SAMSQGTHSSFFSLIECRRAISVWKHSSDTNAQSRIKRLR---KDL 282
Query: 181 DSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQ-SRLNWLRDGDANSKFFHSVLA 239
D+ E+ + + I + SL+ + W+Q SR WL GD N+ FFH+ +
Sbjct: 283 DA---EKSIQIPCWPRIEYIKDQL-SLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVH 338
Query: 240 ARRRLNSLSSILVDGVVVEGVQPFRQ------AVFTHFKNHFLDPRL--ERPGVGHLQFR 291
+ R N LS +L E Q F + + F+N F + + LQ +
Sbjct: 339 SERLKNELSFLLD-----ENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAK 393
Query: 292 KLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEF 351
S + L + +E E+ AV+ + +PGPDG FF+ W +K ++ + F
Sbjct: 394 VTSEMNHN-LIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGF 452
Query: 352 HRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVS 411
G L + N T I LIPK+ SPQ +++ RPISL +YKI++KIL RL++ + ++VS
Sbjct: 453 FETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVS 512
Query: 412 EAQSAFVKNRQILDGILIAN*VVDEAR---KLKKYLLLFKVDFAKAYDSVDWGYLDEVMG 468
QSAFV R I D IL+A+ ++ R ++ K + FK D +KAYD V+W +L+ +M
Sbjct: 513 TTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMT 572
Query: 469 SMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVL 528
++ F W WI CV + + SVL+NG P RG+RQGDPLSP LF+L L +
Sbjct: 573 ALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHI 632
Query: 529 MKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLK 588
+ AG TG + + V V+HL FADDTLL+ + L L + +SG
Sbjct: 633 LNKAEQAGKITGIQF-QDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQM 691
Query: 589 VNFHKSSL-----VGVNINDSWLSEAASV 612
+N +KS++ V + I D W+ + +
Sbjct: 692 INLNKSAITFGKNVDIQIKD-WIKSRSGI 719
Score = 51.6 bits (122), Expect = 2e-06
Identities = 33/129 (25%), Positives = 57/129 (43%), Gaps = 14/129 (10%)
Query: 890 DRWLWVPNHDDGYSVRGVYDMLTSQEQPQLHHNMEL----------IWHK*VPLKVSILA 939
D + W+ +H+ YSV+ Y+ L+ Q +L+ ++ IW+ K+ I
Sbjct: 978 DSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFL 1037
Query: 940 WRLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALWPMVRAWLGV 999
W+ L +P + L RGI + + C+ E +NH+ C +W + L
Sbjct: 1038 WKALHGAIPVEDRLRTRGIRSDDG--CLMCDTENETINHILFECPLARQVWAITH--LSS 1093
Query: 1000 VGSRFSFNV 1008
GS FS +V
Sbjct: 1094 AGSEFSNSV 1102
>At4g26360 putative protein
Length = 1141
Score = 253 bits (645), Expect = 5e-67
Identities = 187/645 (28%), Positives = 310/645 (47%), Gaps = 45/645 (6%)
Query: 1 NNKVCVCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF-KGD 59
N + GDFN V E V F + + D L DL+ G FTW+ K
Sbjct: 128 NRPWILLGDFNQVLHPHEHSRHVSLNVDRRIRDFRECLLDAELSDLVYKGSSFTWWNKSK 187
Query: 60 GRSM-RRLDRFLLSVEWCMVWPNCIQVAQLRGLSDH--CPILLSVDEENWGPRPVRLLKC 116
R + +++DR L++ W ++P+ + SDH C ++L +D RP +
Sbjct: 188 TRPVAKKIDRILVNESWSNLFPSSFGLFGPPDFSDHASCGVVLELDPIK-AKRPFKFFNF 246
Query: 117 WQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAE---- 172
P +++ + + W V G + +KLK +K +KD+ N NL + E
Sbjct: 247 LLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEKRTEEAHET 306
Query: 173 -LKI*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANS 231
L +LD+ E E E I L+ S Q+SR+ W +GD N+
Sbjct: 307 LLSFQNLTLDNPSLENAAHELEAQRKWQI------LATAEESFFRQRSRVTWFAEGDGNT 360
Query: 232 KFFHSVLAARRRLNSLSSILVD-GVVVEGVQPFRQAVFTHFKNHFLDPR----LERPGVG 286
++FH + +R+ +N++++++ D G ++ Q +F+N D LE+ +
Sbjct: 361 RYFHRMADSRKSVNTITTLVDDSGTQIDSQQGIADHCALYFENLLSDDNDPYSLEQDDMN 420
Query: 287 HLQFRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVR 346
L + Y + L FS+++IKAA + S K+ GPDG +
Sbjct: 421 LLLTYRCPYSQVADLEAMFSDEDIKAAFFGLPSNKACGPDGF--------------PVTA 466
Query: 347 FVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVI 406
V EF +G L K N+T I LIPK + ++FRPIS + ++YK++A++L +RL++++
Sbjct: 467 AVREFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTDRLQKLL 526
Query: 407 GSVVSEAQSAFVKNRQILDGILIAN*VVDEARKLKKYLL-LFKVDFAKAYDSVDWGYLDE 465
V+S +QSAF+ R + + +L+A +V L + KVD KA+DSV W ++
Sbjct: 527 SCVISPSQSAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEFIIA 586
Query: 466 VMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GL 525
+ ++ P + WI +C+ T T +V VNG F +GLRQGDPLSP+LF+LA
Sbjct: 587 ALLALGVPTKFINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQGDPLSPYLFVLAMEVF 646
Query: 526 NVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMS 585
+ L+ + D+G + +A + +SHL FADD ++ + +++ + L F + S
Sbjct: 647 SKLLNSRFDSGYIRYH--PKASDLSISHLMFADDVMIFFDGGSSSLHGICETLEDFASWS 704
Query: 586 GLKVNFHKSSLVGVNINDSWLSEAASV---LGCKVVKIPFLYLGL 627
GLKVN KS + + + A+ GC +P YLGL
Sbjct: 705 GLKVNNDKSHFFCAGLEQAERNSLAAYGFPQGC----LPIRYLGL 745
>At1g24640 hypothetical protein
Length = 1270
Score = 251 bits (642), Expect = 1e-66
Identities = 196/650 (30%), Positives = 304/650 (46%), Gaps = 49/650 (7%)
Query: 2 NKVCVCGDFNTV-RSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF--KG 58
+K C+ GDFN + + E+ R S + DC FN+ I+ L+++ G FTW +G
Sbjct: 92 DKWCMFGDFNDILHNGEKNGGPRRSDL--DCKAFNEMIKGCDLVEMPAHGNGFTWAGRRG 149
Query: 59 DGRSMRRLDRFLLSVEWCMVWPNCIQV-AQLRGLSDHCPILLSVDEENWGPRPVRLLKCW 117
D RLDR + EW +P Q RG SDH P+L ++L+
Sbjct: 150 DHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRG-SDHRPVL------------IKLMSSQ 196
Query: 118 QDMPGYIDFIRE-------KWVFFQVSGWGGH----VLKEKLKLMKVALKDWHAANTHNL 166
G F + K + G H + ++L+ + +L W N N
Sbjct: 197 DSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKKQNNLNS 256
Query: 167 PSKIAELKI*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRD 226
KI +L +A+L+ +E+ L + + D+ R + Q+SR WLR
Sbjct: 257 LDKINQL---EAALE---KEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRS 310
Query: 227 GDANSKFFHSVLAARRRLNSLSSIL-VDGVVVEGVQPFRQAVFTHFKNHFLDPRLERPGV 285
G+ NSK+FH+ + R+ + + V+G + + +F N F + P
Sbjct: 311 GNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLF---KSSNPSG 367
Query: 286 GHLQFR----KLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIK 341
F ++S + L S EIK AV+ +PGPDG++ FF+ +W +
Sbjct: 368 FTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVG 427
Query: 342 TDLVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANR 401
+ V +F +G + N T + LIPK P + + RPISL +YKI++KI+A R
Sbjct: 428 NQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKR 487
Query: 402 LRQVIGSVVSEAQSAFVKNRQILDGILIAN*VVDEAR---KLKKYLLLFKVDFAKAYDSV 458
L+ + +VS+ QSAFV R I D IL+A+ +V + ++ + K D +KAYD V
Sbjct: 488 LQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRV 547
Query: 459 DWGYLDEVMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLF 518
+W YL ++ S+ F + W WI CV + T SVL+N P L+RGLRQGDPLSPFLF
Sbjct: 548 EWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLF 607
Query: 519 LLAA*GLNVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGL 578
+L GL L+ G G + + +V HL FADD+L + S L+ L
Sbjct: 608 VLCTEGLTHLLNKAQWEGALEGIQFSE-NGPMVHHLLFADDSLFLCKASREQSLVLQKIL 666
Query: 579 VMFEAMSGLKVNFHKSSLV-GVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
++ +G +N +KSS+ G +++ + LG YLGL
Sbjct: 667 KVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGL 716
>At1g10160 putative reverse transcriptase
Length = 1118
Score = 251 bits (642), Expect = 1e-66
Identities = 189/647 (29%), Positives = 313/647 (48%), Gaps = 46/647 (7%)
Query: 8 GDFNTVRSVEERRSV-------RGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTW--FKG 58
GDFN + + E S+ RG + + C + D L DL G FTW +
Sbjct: 141 GDFNQIAAASEHYSINQSLLNLRGMEDLQCC------LRDSQLSDLPSRGVFFTWSNHQQ 194
Query: 59 DGRSMRRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKCWQ 118
D +R+LDR L + EW V+P+ + V G SDH P ++ +D N P + K +
Sbjct: 195 DNPILRKLDRALANGEWFAVFPSALAVFDPPGDSDHAPCIILID--NQPPPSKKSFKYFS 252
Query: 119 DM---PGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAE--- 172
+ P Y+ + W + G L++ LK+ K+ + + N+ + A+
Sbjct: 253 FLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQRTAQSLT 312
Query: 173 -LKI*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANS 231
L+ Q L + + E + I + + S Q+SR+ WL +GDAN+
Sbjct: 313 RLEDIQVELLTSPSDTLFRREHVARKQWIF-----FAAALESFFRQKSRIRWLHEGDANT 367
Query: 232 KFFHSVLAARRRLNSLSSILVD-GVVVEGVQPFRQAVFTHFKNHFLD-------PRLERP 283
+FFH + A + N + + D G VE V + + ++ +H L P
Sbjct: 368 RFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYY-SHLLGIPSENVTPFSVEK 426
Query: 284 GVGHLQFRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTD 343
G L FR S+L T P SE+EI ++ K+PGPDG + FF W +K+
Sbjct: 427 IKGLLPFRCDSFLASQLTTIP-SEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSS 485
Query: 344 LVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLR 403
+V + EF +G L +G N+T I LIPKV L +FRP++ ++YK++ +I++ RL+
Sbjct: 486 VVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLK 545
Query: 404 QVIGSVVSEAQSAFVKNRQILDGILIAN*VVDEARKLKKYLL-LFKVDFAKAYDSVDWGY 462
I V Q F+K R + + +L+A+ +VD + +VD +KAYD+V+W +
Sbjct: 546 LFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEF 605
Query: 463 LDEVMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA 522
L ++ ++ P+V+ WI C+ +A+ S+ NG F ++G+RQGDP+S LF+L
Sbjct: 606 LINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLV- 664
Query: 523 *GLNVLMKALVDAGMFTGYRVGRADSV--VVSHLQFADDTLLIGNKSWANVRALRAGLVM 580
++VL K+L D G G + + +++HL FADD L+ + + +++ + L
Sbjct: 665 --MDVLSKSL-DLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILDD 721
Query: 581 FEAMSGLKVNFHKSSLVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
F SGL +N K+ L+ N + A LG +P YLG+
Sbjct: 722 FRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGV 768
Score = 30.8 bits (68), Expect = 4.2
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Query: 890 DRWLWVPNH---DDGYSVRGVYDMLTSQEQPQLHHNMELIWHK*VPLKVSILAWRLLRDR 946
D +LW H + +S + L L H + +W K K + + W + +R
Sbjct: 910 DTYLWKIGHHAPSNRFSTADTWSYLQPSSTSVLWH--KAVWFKDHVPKQAFICWVVAHNR 967
Query: 947 LPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALW 990
L T+ L G CV E HLF C S +W
Sbjct: 968 LHTRDRLRRWGFSI--PPTCVLCNDLDESREHLFFRCQFSSEIW 1009
>At1g31100 hypothetical protein
Length = 1090
Score = 251 bits (640), Expect = 2e-66
Identities = 175/605 (28%), Positives = 292/605 (47%), Gaps = 22/605 (3%)
Query: 8 GDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFKGDGRS--MRR 65
GDFN V E V F D + + L DL+ G FTW+ ++
Sbjct: 54 GDFNQVLCPAEHSQATSLNVNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKK 113
Query: 66 LDRFLLSVEWCMVWPNCIQVAQLRGLSDH--CPILLS--VDEENWGPRPVRLLKCWQDMP 121
LDR L++ WC +P+ V SDH C ++++ + E RP R P
Sbjct: 114 LDRILVNESWCSRFPSAYAVFGEPDFSDHASCGVIINPLMHREK---RPFRFYNFLLQNP 170
Query: 122 GYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLD 181
+I + E W V G + +KLK +K ++ + N NL ++ E
Sbjct: 171 DFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQ 230
Query: 182 SKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVLAAR 241
+K + E+ + + + C Q+SR+ W+ +GD+N+ +FH + +R
Sbjct: 231 NKTLSDPTIPNAALEMEAQRKWLILVKAEESFFC-QRSRVTWMGEGDSNTSYFHRMADSR 289
Query: 242 RRLNSLSSILVD-GVVVEGVQPFRQAVFTHFKN----HFLDPRLERPGVGHLQFRKLSYL 296
+ +N++ I+ D GV ++ ++ +F N P L + L + S+
Sbjct: 290 KAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHD 349
Query: 297 ERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGK 356
++ L FS +IK+A + S K+ GPDG + FFK W I T++ V+EF +
Sbjct: 350 QKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSV 409
Query: 357 LAKGINSTFIALIPKVASPQSLNEFRPISLVG----SMYKILAKILANRLRQVIGSVVSE 412
L K N+T + LIPK+ + +N+FRPIS ++YK++A++L NRL+ ++ V+S
Sbjct: 410 LLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISP 469
Query: 413 AQSAFVKNRQILDGILIAN*VVDEARKLK-KYLLLFKVDFAKAYDSVDWGYLDEVMGSMS 471
QSAF+ R + + +L+A +V + + KVD KA+DS+ W ++ + ++
Sbjct: 470 FQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIG 529
Query: 472 FPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKA 531
P + WI +C+ T T SV VNG+ F RGLRQG+PLSPFLF+LA + L+ +
Sbjct: 530 IPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNS 589
Query: 532 LVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNF 591
AG + + + +SHL FADD ++ + +++ + L F SGL +N
Sbjct: 590 RFQAGYI--HYHPKTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNR 647
Query: 592 HKSSL 596
K+ L
Sbjct: 648 EKTHL 652
Score = 33.9 bits (76), Expect = 0.50
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 865 WAREEELVEECRALLL---TVSLQ--ESVTDRWLWVPNHDD----GYSVRGVYDMLTSQE 915
W ++ ALL+ T++L +S D ++W+ DD G+S ++ + ++
Sbjct: 866 WLISPPRTDQALALLIHLTTIALPCFDSSPDTFVWIV--DDFTCHGFSAARTWEAMRPKK 923
Query: 916 QPQLHHNMELIWHK*VPLKVSILAWRLLRDRLPTKSNLANRGILAL-EARLCVSGCGNVE 974
+ + +W K K + W +RLPT+ LA G+ + LC S E
Sbjct: 924 P--VKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSS---RPE 978
Query: 975 DVNHLFLSCVTFSALWPMV 993
+HL L CV + +W +V
Sbjct: 979 SRDHLLLYCVFSAVIWKLV 997
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 250 bits (639), Expect = 3e-66
Identities = 188/637 (29%), Positives = 308/637 (47%), Gaps = 31/637 (4%)
Query: 6 VCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF-KGDGRSMR 64
+CGDFN + ++ E++ R + + F + I + DL G ++W K ++
Sbjct: 495 MCGDFNEILNLNEKKGGR-RRSIGSLQNFTNMINCCNMKDLKSKGNPYSWVGKRQNETIE 553
Query: 65 R-LDRFLLSVEWCMVWPNC-IQVAQLRGLSDHCPILLSVDEENWGPR-PVRLLKCWQDMP 121
LDR ++ +W +P + + G SDH P+++ + EE R R +
Sbjct: 554 SCLDRVFINSDWQASFPAFETEFLPIAG-SDHAPVIIDIAEEVCTKRGQFRYDRRHFQFE 612
Query: 122 GYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLD 181
++D ++ W + GG+ EKL + L W N KI LK +D
Sbjct: 613 DFVDSVQRGWNRGRSDSHGGYY--EKLHCCRQELAKWKRRTKTNTAEKIETLKY---RVD 667
Query: 182 SKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVLAAR 241
+ + L + + L D++ R +SR W+ GD N+ FF++ R
Sbjct: 668 AAERDHTLPHQTILRLR---QDLNQAYRDEELYWHLKSRNRWMLLGDRNTMFFYASTKLR 724
Query: 242 RRLNSLSSILVDGVVVEGVQPFRQAVFTHF-KNHFLDPRLERPGVGHLQF-----RKLSY 295
+ N + +I +G++ FR +N+F D + K++
Sbjct: 725 KSRNRIKAI----TDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEIISGIAPKVTE 780
Query: 296 LERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNG 355
L + ++ E++ AV+ + ++PG DG F+ W I D+ V F +
Sbjct: 781 QMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMVRHFFESD 840
Query: 356 KLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQS 415
+ IN T I LIPK+ P+ ++++RPISL + YKI++KIL RL+Q +G V+S++Q+
Sbjct: 841 VMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQA 900
Query: 416 AFVKNRQILDGILIAN*V---VDEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMSF 472
AFV + I D +L+A+ + + R+ + + K D +KAYD V+W +L++VM + F
Sbjct: 901 AFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGF 960
Query: 473 PVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GL-NVLMKA 531
W KWI CV + + VL+NGSP + RG+RQGDPLSP+LFL A L N+L KA
Sbjct: 961 APRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKA 1020
Query: 532 LVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNF 591
V+ G ++ + D + +SHL FADD+L S N+ L +E SG K+N+
Sbjct: 1021 EVNK-QIHGMKITK-DCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINY 1078
Query: 592 HKSSLV-GVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
KSS++ G I +LG V+ YLGL
Sbjct: 1079 AKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGL 1115
Score = 38.5 bits (88), Expect = 0.020
Identities = 29/110 (26%), Positives = 43/110 (38%), Gaps = 11/110 (10%)
Query: 890 DRWLWVPNHDDGYSVRGVYDMLTSQEQPQ------LHHNMEL---IWHK*VPLKVSILAW 940
D + W + Y+VR Y + T + L ++ L IW + K+ W
Sbjct: 1343 DSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIW 1402
Query: 941 RLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALW 990
R L L T + L NR I A C C E +NH+ +C +W
Sbjct: 1403 RCLSGALSTTTQLRNRNIPA--DPTCQRCCNADETINHIIFTCSYAQVVW 1450
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 248 bits (633), Expect = 1e-65
Identities = 187/597 (31%), Positives = 285/597 (47%), Gaps = 57/597 (9%)
Query: 8 GDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWFKGDGRSM---R 64
GDFNT+ V+ER G ++ D F D+I + LIDL G KFTW +G S +
Sbjct: 37 GDFNTILWVDERMGGNG-RLSPDSLAFGDWINELSLIDLGFKGNKFTWRRGRQESTVVAK 95
Query: 65 RLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKCWQDMPGYI 124
RLDR + + W + SDH P+ + ++ P R L+ W
Sbjct: 96 RLDRVFVCAHARLKWQEAVVSHLPFMASDHAPLYVQLE-----PLQQRKLRKWN------ 144
Query: 125 DFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDSKG 184
+ VF + HV KEKL +A++K Q L
Sbjct: 145 -----REVFGDI-----HVRKEKL---------------------VADIKEVQDLLGVVL 173
Query: 185 EEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLNWLRDGDANSKFFHSVLAARRRL 244
++ L++EE+ + ++ + ++ +Q+SR ++ GD N+ FFH+ RRR
Sbjct: 174 SDDLLAKEEV-----LLKEMDLVLEQEETLWFQKSREKYIELGDRNTTFFHTSTIIRRRR 228
Query: 245 NSLSSILVDGV--VVEGVQPFRQAVFTHFKNHFLDPRLE-RPGVGHLQFRKLSYLERGGL 301
N + S+ D V + V+ A+ + + + L+ E R + F +S E+ L
Sbjct: 229 NRIESLKGDDDRWVTDKVELEAMALTYYKRLYSLEDVSEVRNMLPTGGFASISEAEKAAL 288
Query: 302 TKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGKLAKGI 361
+ F++ E+ +AV FK+PGPDG F++ W + + RFV EF G L
Sbjct: 289 LQAFTKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPAST 348
Query: 362 NSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQSAFVKNR 421
N + LI KVA P+ + +FRP+SL ++KI+ K++ RL+ VI ++ AQ++F+ R
Sbjct: 349 NDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGR 408
Query: 422 QILDGILIAN*VVDEARKLK--KYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRKW 479
+D I++ V R+ K K +L K+D KAYD V W +L E + + W
Sbjct: 409 LSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSR 468
Query: 480 IKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMFT 539
I V + SVL NG TD F RGLRQGDPLSP+LF+L L L++A V +
Sbjct: 469 IMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWK 528
Query: 540 GYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKSSL 596
V S +SH+ FADD +L S A +R +R L F SG KV+ KS +
Sbjct: 529 PIAVSCGGS-KLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKI 584
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 246 bits (629), Expect = 4e-65
Identities = 185/630 (29%), Positives = 312/630 (49%), Gaps = 34/630 (5%)
Query: 1 NNKVCVCGDFNTVRSVEERRSVRGSQVVDDCT--PFNDFIEDRVLIDLLLSGRKFTWFKG 58
N + + GDFN + S E+ G + ++ T F + + + D+ G +F+W
Sbjct: 509 NAEWLLVGDFNEILSNAEKI---GGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE 565
Query: 59 DGRSMRR--LDRFLLSVEWCMVWPNC-IQVAQLRGLSDHCPILLSVDEENWGPRPVRLLK 115
+ LDR ++ W +P I+ G SDH P+L+ +E PR +L +
Sbjct: 566 RHTHTVKCCLDRVFINSAWTATFPYAEIEFLDFTG-SDHKPVLVHFNESF--PRRSKLFR 622
Query: 116 CWQ---DMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAE 172
D+P + ++ W + S + E++ + A+ A+ N +I +
Sbjct: 623 FDNRLIDIPTFKRIVQTSWRTNRNSR--STPITERISSCRQAMARLKHASNLNSEQRIKK 680
Query: 173 LKI*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITS--ICWQQ-SRLNWLRDGDA 229
L Q+SL+ E + + +L I SL++ + I W+Q SR W+++GD
Sbjct: 681 L---QSSLNRAMESTRRVDRQL-----IPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQ 732
Query: 230 NSKFFHSVLAARRRLNSLSSILVD-GVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHL 288
N+ +FH+ R N +++I+ D G + G + F N F ++ +
Sbjct: 733 NTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFA 792
Query: 289 QFRK-LSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRF 347
F+ ++ LTK FS+ EI A+ K+PGPDG+ F+K+ W + D++
Sbjct: 793 DFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILE 852
Query: 348 VTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIG 407
V +F + IN T I +IPK+ +P +L+++RPI+L +YK+++K L NRL+ +
Sbjct: 853 VKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLN 912
Query: 408 SVVSEAQSAFVKNRQILDGILIAN*VVDE---ARKLKKYLLLFKVDFAKAYDSVDWGYLD 464
S+VS++Q+AF+ R I D ++IA+ V+ +++ K + K D +KAYD V+W +L+
Sbjct: 913 SIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLE 972
Query: 465 EVMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*G 524
M F W WI V + SVL+NGSP RG+RQGDPLSP+LF+L
Sbjct: 973 TTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDI 1032
Query: 525 LNVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAM 584
L+ L+ +G G R+G + ++HLQFADD+L + N +AL+ ++E
Sbjct: 1033 LSHLINGRASSGDLRGVRIGNG-APAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYY 1091
Query: 585 SGLKVNFHKSSLV-GVNINDSWLSEAASVL 613
SG K+N KS + G + S S +L
Sbjct: 1092 SGQKINVQKSMITFGSRVYGSTQSRLKQIL 1121
Score = 36.2 bits (82), Expect = 0.10
Identities = 28/110 (25%), Positives = 44/110 (39%), Gaps = 11/110 (10%)
Query: 890 DRWLWVPNHDDGYSVRGVYDMLTSQEQPQL------HHNMEL---IWHK*VPLKVSILAW 940
D+ +W N Y+VR Y +LT + H +++L IW+ + K+ W
Sbjct: 1383 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 1442
Query: 941 RLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALW 990
R L L T L RG+ + C E +NH +C + W
Sbjct: 1443 RALSQALATTERLTTRGMRIDPS--CPRCHRENESINHALFTCPFATMAW 1490
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 245 bits (625), Expect = 1e-64
Identities = 184/630 (29%), Positives = 312/630 (49%), Gaps = 34/630 (5%)
Query: 1 NNKVCVCGDFNTVRSVEERRSVRGSQVVDDCT--PFNDFIEDRVLIDLLLSGRKFTWFKG 58
N + + GDFN + S E+ G + ++ T F + + + D+ G +F+W
Sbjct: 283 NAEWLLVGDFNEILSNAEKI---GGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE 339
Query: 59 DGRSMRR--LDRFLLSVEWCMVWPNC-IQVAQLRGLSDHCPILLSVDEENWGPRPVRLLK 115
+ LDR ++ W +P + G SDH P+L+ +E PR +L +
Sbjct: 340 RHTHTVKCCLDRVFINSAWTATFPYAETEFLDFTG-SDHKPVLVHFNESF--PRRSKLFR 396
Query: 116 CWQ---DMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAE 172
D+P + ++ W + S + E++ + A+ A+ N +I +
Sbjct: 397 FDNRLIDIPTFKRIVQTSWRTNRNSR--STPITERISSCRQAMARLKHASNLNSEQRIKK 454
Query: 173 LKI*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITS--ICWQQ-SRLNWLRDGDA 229
L Q+SL+ E + + +L I SL++ + I W+Q SR W+++GD
Sbjct: 455 L---QSSLNRAMESTRRVDRQL-----IPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQ 506
Query: 230 NSKFFHSVLAARRRLNSLSSILVD-GVVVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHL 288
N+ +FH+ R N +++I+ D G + G + F N F ++ +
Sbjct: 507 NTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFA 566
Query: 289 QFRK-LSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRF 347
F+ ++ LTK FS+ EI A+ K+PGPDG+ F+K+ W + D++
Sbjct: 567 DFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILE 626
Query: 348 VTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIG 407
V +F + IN T I +IPK+ +P +L+++RPI+L +YK+++K L NRL+ +
Sbjct: 627 VKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLN 686
Query: 408 SVVSEAQSAFVKNRQILDGILIAN*VVDE---ARKLKKYLLLFKVDFAKAYDSVDWGYLD 464
S+VS++Q+AF+ R I D ++IA+ V+ +++ K + K D +KAYD V+W +L+
Sbjct: 687 SIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLE 746
Query: 465 EVMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*G 524
M F W WI V + SVL+NGSP RG+RQGDPLSP+LF+L
Sbjct: 747 TTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDI 806
Query: 525 LNVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAM 584
L+ L+ +G G R+G + ++HLQFADD+L + N +AL+ ++E
Sbjct: 807 LSHLINGRASSGDLRGVRIGNG-APAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYY 865
Query: 585 SGLKVNFHKSSLV-GVNINDSWLSEAASVL 613
SG K+N KS + G + S S+ +L
Sbjct: 866 SGQKINVQKSMITFGSRVYGSTQSKLKQIL 895
Score = 37.0 bits (84), Expect = 0.059
Identities = 28/110 (25%), Positives = 44/110 (39%), Gaps = 11/110 (10%)
Query: 890 DRWLWVPNHDDGYSVRGVYDMLTSQEQPQL------HHNMEL---IWHK*VPLKVSILAW 940
D+ +W N Y+VR Y +LT + H +++L IW+ + K+ W
Sbjct: 1157 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 1216
Query: 941 RLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALW 990
R L L T L RG+ +C E +NH +C + W
Sbjct: 1217 RALSQALATTERLTTRGMRI--DPICPRCHRENESINHALFTCPFATMAW 1264
>At3g31420 hypothetical protein
Length = 1491
Score = 238 bits (607), Expect = 1e-62
Identities = 180/585 (30%), Positives = 277/585 (46%), Gaps = 29/585 (4%)
Query: 6 VCGDFNTVRSVEERRS--VRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF--KGDGR 61
+ GDFN + S E+R +R + D F + + DL G +F+W +GD
Sbjct: 314 IMGDFNEILSNREKRGGRLRPERTFQD---FRNMVRGCNFTDLKSVGDRFSWAGKRGDHH 370
Query: 62 SMRRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKC-WQDM 120
LDR + + EW ++P V G SDH P++ ++ + R
Sbjct: 371 VTCSLDRTMANNEWHTLFPESETVFMEYGESDHRPLVTNISAQKEERRGFFSYDSRLTHK 430
Query: 121 PGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASL 180
G+ + +W S G L KL + A+ W N N +I KI + L
Sbjct: 431 EGFKQVVLNQWHRRNGSFEGDSSLNRKLVECRQAISRWKKNNRVNAEERI---KIIRHKL 487
Query: 181 DSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQ-QSRLNWLRDGDANSKFFHSVLA 239
D + E ++ ++ I WQ +SR WL GD N+++FHS
Sbjct: 488 DRAIATGTATPRERRQMRQDLNQAYADEE----IYWQTKSRSRWLNAGDRNTRYFHSTTK 543
Query: 240 ARRRLNSLSSIL-VDGVVVEGVQPFRQAVFTHFKNHFL---DPRLERPGVGHLQFRKLSY 295
RR N L S+ DG + G + + +F + + + L V +K++
Sbjct: 544 TRRCRNRLLSVQDSDGDICRGDENIAKVAINYFDDLYKSTPNTSLRYADVFQGFQQKITD 603
Query: 296 LERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNG 355
L +P +E EI+ +V+ ++P PDG F++ FWP+IK ++ VT F
Sbjct: 604 EINEDLIRPVTELEIEESVFSVAPSRTPDPDGFTADFYQQFWPDIKQKVIDEVTRFFERS 663
Query: 356 KLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQS 415
+L + N T + LIPKV +P ++ +FRPI+L YKI++KIL NRL++ +G ++E Q+
Sbjct: 664 ELDERHNHTNLCLIPKVETPTTIAKFRPIALCNVSYKIISKILVNRLKKHLGGAITENQA 723
Query: 416 AFVKNRQILDGILIAN*VV----DEARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMS 471
AFV R I + +IA+ V R+ Y+ L K D KAYD ++W +L+E M M
Sbjct: 724 AFVPGRLITNNAIIAHEVYYALKARKRQANSYMAL-KTDITKAYDRLEWDFLEETMRQMG 782
Query: 472 FPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKA 531
F W + I CV SVL+NGSP ERG+R GDPLSP+LF+L A L+ ++K
Sbjct: 783 FNTKWIERIMICVTMVRFSVLINGSPHGTIKPERGIRHGDPLSPYLFILCAEVLSHMIKQ 842
Query: 532 LVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRA 576
G R+ +SHL FADD++ + AN R+ A
Sbjct: 843 AEINKKLKGIRLS-TQGPFISHLLFADDSIFF---TLANQRSCTA 883
Score = 32.7 bits (73), Expect = 1.1
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 894 WVPNHDDGYSVRGVYDMLT-------SQEQPQLHHNMELIWHK*VPLKVSILAWRLLRDR 946
W D Y+V+ Y + T + P +L+W K+ W++L
Sbjct: 1129 WHYTKDGMYTVKSAYWLATHLPGTTGTHPPPGDIKLKQLLWKTKTAPKIKHFCWKILSGA 1188
Query: 947 LPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALW 990
+ T L R I + +C C + E HLF C A W
Sbjct: 1189 IATGEMLRYRHIN--KQSICKRCCRDEETSQHLFFECDYAKATW 1230
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 238 bits (606), Expect = 2e-62
Identities = 179/577 (31%), Positives = 277/577 (47%), Gaps = 32/577 (5%)
Query: 34 FNDFIEDRVLIDLLLSGRKFTW--FKGDGRSMRRLDRFLLSVEWCMVWPNC-IQVAQLRG 90
F FI L DL SG F+W + D +RLDR + + W +P+ + + G
Sbjct: 58 FRSFISKNGLWDLKYSGNPFSWRGMRYDWFVRQRLDRAMSNNSWLESFPSGRSEYLRFEG 117
Query: 91 LSDHCPILLSVDEENWGPR-PVRLLKCWQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLK 149
SDH P+++ VDE R R +D I+E W + G + K+
Sbjct: 118 -SDHRPLVVFVDEARVKRRGQFRFDNRLRDNDVVNALIQETW-----TNAGDASVLTKMN 171
Query: 150 LMKVALKDWHAANTHNLPSKIAELKI*QASLDSKGEEEQLSEEELGE--LHGISTDIHSL 207
+ + +W N I + + K EE L+ + + ++ +
Sbjct: 172 QCRREIINWTRLQNLNSAELIEKTQ--------KALEEALTADPPNPTTIGALTATLEHA 223
Query: 208 SRLITSICWQQSRLNWLRDGDANSKFFHSVLAARRRLNSLSSIL-VDGVVVEGVQPFRQA 266
+L Q+SR+ WL GD N+ +FH+V RR N L+ + ++GV Q
Sbjct: 224 YKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVMEDINGVAQHEEHQISQI 283
Query: 267 VFTHFKNHFLDPRLERPG----VGHLQFRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKS 322
+ +F+ F E G V +S + LT+ +++E+K AV+ ++ K+
Sbjct: 284 ISGYFQQIFTS---ESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKA 340
Query: 323 PGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFR 382
PGPDG GF+ S+W I TD+ R + F + + +N T I LIPK P+ + ++R
Sbjct: 341 PGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYR 400
Query: 383 PISLVGSMYKILAKILANRLRQVIGSVVSEAQSAFVKNRQILDGILIAN*VVDEAR--KL 440
PI+L YKI+AKI+ R++ ++ ++SE QSAFV R I D +LI + V+ R
Sbjct: 401 PIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSA 460
Query: 441 KKYL-LLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRKWIKECVGTATASVLVNGSPTD 499
KK+ + K D +KAYD V+W +L +V+ F +W W+ ECV + + S L+NG+P
Sbjct: 461 KKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQG 520
Query: 500 EFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMFTGYRVGRADSVVVSHLQFADD 559
+ RGLRQGDPLSP LF+L L+ L G RV + V+HL FADD
Sbjct: 521 KVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVS-INGPRVNHLLFADD 579
Query: 560 TLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKSSL 596
T+ + L L + SG +NFHKSS+
Sbjct: 580 TMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSV 616
Score = 37.7 bits (86), Expect = 0.035
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 890 DRWLWVPNHDDGYSVRGVYDM--LTSQEQPQLHHNMEL-IWHK*VPLKVSILAWRLLRDR 946
D+ W+P Y+ R Y + + S PQ N + +W K+ L W+ +
Sbjct: 895 DKLAWLPVKSGQYTSRSGYGIASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEA 954
Query: 947 LPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALWPM 992
LP L R I A CG E HLF C + +W +
Sbjct: 955 LPVGIQLVRRHISPSAA---CHRCGAPESTTHLFFHCEFAAQVWEL 997
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 234 bits (598), Expect = 1e-61
Identities = 185/598 (30%), Positives = 292/598 (47%), Gaps = 74/598 (12%)
Query: 34 FNDFIEDRVLIDLLLSGRKFTWFKGDGRS---MRRLDRFLLSVEWCMVWP-NCIQVAQLR 89
F F+ L D+ +G +W +G S RLDR L + W ++P + + +
Sbjct: 104 FRSFVSQNGLWDINHTGNSLSW-RGTRYSHFIKSRLDRALGNCSWSELFPMSKCEYLRFE 162
Query: 90 GLSDHCPILLSVDEENWGPRPVRLLKCWQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLK 149
G SDH P++ +G P++ K ++ F R L+EK +
Sbjct: 163 G-SDHRPLVTY-----FGAPPLKRSKPFR-------FDRR--------------LREKEE 195
Query: 150 LMKVALKDWHAANTHNLPSKIAELKI*QASLDSKGEEEQLSEEELGELH-----GISTDI 204
+ + + W A ++ KI+ + Q+ + E+ S + + + +S DI
Sbjct: 196 IRALVKEVWELARQDSVLYKISRCR--QSIIKWTKEQNSNSAKAIKKAQQALESALSADI 253
Query: 205 HSLSRLITSIC-------------WQQ-SRLNWLRDGDANSKFFHSVLAARRRLNSLSSI 250
S LI SI W+Q SR+ WL GD N +FH+ RR LN+LS +
Sbjct: 254 PDPS-LIGSITQELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLS-V 311
Query: 251 LVDGV---------VVEGVQPFRQAVFTHFKNHFLDPRLERPGVGHLQFRKLSYLERGGL 301
+ DG + + + Q +FT N D ++ + + + +S L
Sbjct: 312 IEDGSGQEFHEEEQIASTISSYFQNIFTTSNNS--DLQVVQEALSPI----ISSHCNEEL 365
Query: 302 TKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGKLAKGI 361
K S EIK A++ + K+PGPDG + FF ++W I+ D+ R + F + L+ +
Sbjct: 366 IKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRL 425
Query: 362 NSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQSAFVKNR 421
N T + LIPK+++P+ ++++RPI+L YKI+AKIL RL+ + ++S QSAFV R
Sbjct: 426 NETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGR 485
Query: 422 QILDGILIAN*VVDEAR--KLKKYL-LLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRK 478
I D +LI + ++ R KKY + K D +KAYD + W +L EV+ + F W +
Sbjct: 486 AIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIR 545
Query: 479 WIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMF 538
W+ +CV T + S L+NGSP RGLRQGDPLSP+LF+L L+ L + + G+
Sbjct: 546 WVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVM 605
Query: 539 TGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKSSL 596
G RV R S V+HL FADDT+ + AL L +E SG +N KS++
Sbjct: 606 VGIRVARG-SPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAI 662
Score = 41.6 bits (96), Expect = 0.002
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 890 DRWLWVPNHDDGYSVRGVYDM--LTSQEQPQLHHNMEL-IWHK*VPLKVSILAWRLLRDR 946
D +W+P Y+ + Y + L S QL N + IW KV W+ ++
Sbjct: 935 DSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGA 994
Query: 947 LPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALWPM 992
LP L+ R I EA + CG E HL L C +W +
Sbjct: 995 LPVGEALSRRNI---EAEVTCKRCGQTESSLHLMLLCPYAKKVWEL 1037
>At2g11240 pseudogene
Length = 1044
Score = 230 bits (586), Expect = 4e-60
Identities = 184/612 (30%), Positives = 288/612 (46%), Gaps = 61/612 (9%)
Query: 43 LIDLLLSGRKFTWF--KGDGRSMRRLDRFLLSVEWCMVWP--NCIQVAQLRGLSDHCPIL 98
L DL SG +W + D RLDR L + W +P CI + G SDH P+L
Sbjct: 6 LYDLRHSGNFLSWRGKRHDHVVHCRLDRALSNGAWAEDYPASRCIYLC-FEG-SDHRPLL 63
Query: 99 LSVDEENWGPRPV----RLLKCWQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVA 154
D + V R LK ++ ++E W + +++EK+ ++
Sbjct: 64 THFDLSKKKKKGVFRYDRRLKNNDEVTA---LVQEAWNLYDTD-----IVEEKISRCRLE 115
Query: 155 LKDWHAANTHNLPSKIAELKI*QASLDSKGEEEQLSEEELGELHG-ISTDIHSLSRLITS 213
+ W A + I E + K EE S++ EL I+T++ +
Sbjct: 116 IVKWSRAKQQSSQKLIEENR-------QKLEEAMSSQDHNQELLSTINTNLLLAYKAEEE 168
Query: 214 ICWQQSRLNWLRDGDANSKFFHSVLAARRRLNSLSSILVDGVVVEGVQPFRQAVFTHFKN 273
Q+SR WL GD NS +FH++ R +N S I + +GV + +A + +
Sbjct: 169 YWKQRSRQLWLALGDKNSGYFHAITRGRTVINKFSVIEKE----DGVPEYEEAGILNVIS 224
Query: 274 HFLDPRLERPGVGHLQFRKLSYLERGGLT-------KPF-----SEDEIKAAVWDCDSFK 321
+ F+KL G KPF + +EIK+A + + K
Sbjct: 225 EY--------------FQKLFSANEGARAATIKEAIKPFISPEQNPEEIKSACFSIHADK 270
Query: 322 SPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEF 381
+PGPDG + FF+S W + ++V + F + L IN T I LIPK+ S + + ++
Sbjct: 271 APGPDGFSASFFQSNWMTVGPNIVLEIQSFFSSSTLQPTINKTHITLIPKIQSLKRMVDY 330
Query: 382 RPISLVGSMYKILAKILANRLRQVIGSVVSEAQSAFVKNRQILDGILIAN*VVDEARKL- 440
RPI+L YKI++K+L+ RL+ ++ ++SE QSAFV R D +LI + + + L
Sbjct: 331 RPIALCTVFYKIISKLLSRRLQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLG 390
Query: 441 --KKYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRKWIKECVGTATASVLVNGSPT 498
K+ + K + +KAYD ++W ++ VM M F W WI +C+ T + S L+NGS
Sbjct: 391 AEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQ 450
Query: 499 DEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMFTGYRVGRADSVVVSHLQFAD 558
ERGLRQGDPLSPFLF++ + L+ L + G G RV + + V+HL FAD
Sbjct: 451 GAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNP-RVNHLLFAD 509
Query: 559 DTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKSSLV-GVNINDSWLSEAASVLGCKV 617
DT+ + + L +E SG +N KS++ D +EA +LG ++
Sbjct: 510 DTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQL 569
Query: 618 VKIPFLYLGLSR 629
V YLGL +
Sbjct: 570 VGGLGKYLGLPK 581
>At2g28980 putative non-LTR retroelement reverse transcriptase
Length = 1529
Score = 229 bits (585), Expect = 5e-60
Identities = 158/537 (29%), Positives = 265/537 (48%), Gaps = 25/537 (4%)
Query: 107 GPRPVRLLKCWQDMPGYIDFIREKWVF---FQVSGWGGHVLKEKLKLMKVALKDWHAANT 163
G +P + + +P ++ + W VS + +KLK +K L++
Sbjct: 544 GRKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKL 603
Query: 164 HNLPSKIAELKI*----QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQS 219
+LP + E I QA+ + +E ++EE TD LS L Q+S
Sbjct: 604 GDLPKRTREAHILLCEKQATTLANPSQETIAEELKAY-----TDWTHLSELEEGFLKQKS 658
Query: 220 RLNWLRDGDANSKFFHSVLAARRRLNSLSSILVDGVVVEGVQPFRQAVFTHFKNHFLDPR 279
+L+W+ GD N+ +FH R+ NS+ I + F N FL+ +
Sbjct: 659 KLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQ 718
Query: 280 ------LERPGVGHLQFRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFF 333
+ + +L + S ++ LT+ + +EI+ ++ + KSPGPDG FF
Sbjct: 719 SGDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFF 778
Query: 334 KSFWPEIKTDLVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKI 393
K+ W D + + F G L KG+N+T +ALIPK + ++RPIS +YK+
Sbjct: 779 KATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKV 838
Query: 394 LAKILANRLRQVIGSVVSEAQSAFVKNRQILDGILIAN*VV-DEARKLKKYLLLFKVDFA 452
++KILANRL+ ++ S + + QSAFVK R +++ +L+A +V D ++ K+D +
Sbjct: 839 ISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDIS 898
Query: 453 KAYDSVDWGYLDEVMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDP 512
KA+DSV W +L + +++FP +R WIK C+ TAT SV VNG F RGLRQG
Sbjct: 899 KAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCA 958
Query: 513 LSPFLFLLAA*GLNVLMKALVDAGMF--TGYRVGRADSVVVSHLQFADDTLLIGNKSWAN 570
LSP+LF++ +NVL + +A + GY + + + ++HL FADD ++ + +
Sbjct: 959 LSPYLFVIC---MNVLSHMIDEAAVHRNIGYH-PKCEKIGLTHLCFADDLMVFVDGHQWS 1014
Query: 571 VRALRAGLVMFEAMSGLKVNFHKSSLVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
+ + F SGL+++ KS++ ++ S + S ++P YLGL
Sbjct: 1015 IEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGL 1071
Score = 29.6 bits (65), Expect = 9.4
Identities = 21/68 (30%), Positives = 31/68 (44%), Gaps = 8/68 (11%)
Query: 926 IWHK*VPLKVSILAWRLLRDRLPTKSNLA--NRGILALEARLCVSGCGNVEDV-NHLFLS 982
+W K S L W +++RL T + N G L + + C N E+ +HLF S
Sbjct: 1358 VWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQL-----VTCTLCNNAEETRDHLFFS 1412
Query: 983 CVTFSALW 990
C S +W
Sbjct: 1413 CQYTSYVW 1420
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 221 bits (564), Expect = 1e-57
Identities = 166/544 (30%), Positives = 255/544 (46%), Gaps = 39/544 (7%)
Query: 50 GRKFTWFKGDGRSM---RRLDRFLLSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENW 106
G +FTW +G S +RLDR L + W + CP +VD
Sbjct: 5 GNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEALL----------CPAQ-NVDARR- 52
Query: 107 GPRPVRLLKCWQDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHA---ANT 163
RP R W G+ + + W +G V +L+ LK W+ N
Sbjct: 53 --RPFRFEAAWLSHEGFKELLTASWD----TGLSTPVALNRLRWQ---LKKWNKEVFGNI 103
Query: 164 HNLPSKI-AELKI*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICWQQSRLN 222
H K+ ++LK Q L+ ++ L +E+ + + L ++ +Q+SR
Sbjct: 104 HVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDT-----LLKEFDVLLHQEETLWFQKSREK 158
Query: 223 WLRDGDANSKFFHSVLAARRRLNSLSSIL--VDGVVVEGVQPFRQAVFTHFKNHFL-DPR 279
L GD N+ FFH+ RRR N + + D V E + A+ + K + L D
Sbjct: 159 LLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVS 218
Query: 280 LERPGVGHLQFRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPE 339
+ R + F +L+ E+ L +PF+ DE+ AV FK+PGPDG F++ W
Sbjct: 219 VVRGTLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWET 278
Query: 340 IKTDLVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILA 399
+ + +FV EF +G L K N + L+ KVA P+ + +FRP+SL ++KI+ K++
Sbjct: 279 VGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMV 338
Query: 400 NRLRQVIGSVVSEAQSAFVKNRQILDGILIAN*VVDEARKLK--KYLLLFKVDFAKAYDS 457
RL+ VI ++ AQ++F+ R D I++ V R+ K K +L K+D KAYD
Sbjct: 339 IRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDR 398
Query: 458 VDWGYLDEVMGSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFL 517
+ W +L E + + W K I ECV S+L NG TD F ERGLRQGDP+SP+L
Sbjct: 399 IRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYL 458
Query: 518 FLLAA*GLNVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAG 577
F+L L ++ V G + + + VSH+ FADD +L S A +L
Sbjct: 459 FVLCIERLCHQIETAVGRGDWKSISISQG-GPKVSHVCFADDLILFAEASVAQKVSLEKS 517
Query: 578 LVMF 581
+ F
Sbjct: 518 KIFF 521
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.338 0.149 0.505
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,847,021
Number of Sequences: 26719
Number of extensions: 964942
Number of successful extensions: 3274
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2939
Number of HSP's gapped (non-prelim): 164
length of query: 1050
length of database: 11,318,596
effective HSP length: 109
effective length of query: 941
effective length of database: 8,406,225
effective search space: 7910257725
effective search space used: 7910257725
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC135604.8