BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135565.5 + phase: 0 /pseudo
(93 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g31980 hypothetical protein 89 5e-19
At3g31440 hypothetical protein 88 6e-19
At3g42100 putative protein 87 1e-18
At3g13250 hypothetical protein 86 3e-18
At1g52960 hypothetical protein 86 4e-18
At1g64410 unknown protein 85 5e-18
At2g14470 pseudogene 84 2e-17
At2g07620 putative helicase 83 3e-17
At3g30560 hypothetical protein 81 8e-17
At2g05080 putative helicase 81 1e-16
At3g43350 putative protein 79 3e-16
At3g42340 putative protein 79 5e-16
At1g54430 hypothetical protein 76 3e-15
At4g04300 hypothetical protein 75 4e-15
At1g35940 hypothetical protein 75 7e-15
At3g30420 hypothetical protein 74 2e-14
At2g14300 pseudogene; similar to MURA transposase of maize Muta... 61 1e-10
At4g03690 hypothetical protein 52 7e-08
At5g28230 putative protein 43 3e-05
At5g37110 putative helicase 40 2e-04
>At3g31980 hypothetical protein
Length = 1099
Score = 88.6 bits (218), Expect = 5e-19
Identities = 47/92 (51%), Positives = 65/92 (70%), Gaps = 4/92 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM+R+CF +LD++L +V+G N D K PFGGKV V GDFRQVLPV+ A R +IV +A
Sbjct: 729 MMSRYCFESLDRSLNDVIG--NIDGK--PFGGKVVVFGGDFRQVLPVIHGAGRAEIVLAA 784
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQEE 92
+N+S +W C+VL LT NM L + + + D+ E
Sbjct: 785 LNSSYLWEHCKVLTLTKNMRLMSNDLDKDEAE 816
>At3g31440 hypothetical protein
Length = 536
Score = 88.2 bits (217), Expect = 6e-19
Identities = 48/91 (52%), Positives = 63/91 (68%), Gaps = 5/91 (5%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM+RFCF ALDK+ +++ K+ K FGGKV V GDFRQVLPV+ A R +IV S+
Sbjct: 191 MMSRFCFEALDKSFSDII----KNTYNKVFGGKVVVFSGDFRQVLPVINGAGRAEIVMSS 246
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQE 91
+NAS +W C+VL+LT NM L ANN ++ E
Sbjct: 247 LNASYLWDHCKVLKLTKNMRL-LANNLSETE 276
>At3g42100 putative protein
Length = 1752
Score = 87.0 bits (214), Expect = 1e-18
Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 4/90 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++FCF +LDK+ +++ NKDNK FGGKV V GDFRQVLPV+ A R +IV S+
Sbjct: 1383 MMSKFCFESLDKSFYDILN--NKDNKV--FGGKVVVFGGDFRQVLPVINGAGRVEIVMSS 1438
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQ 90
+NAS +W C+VL+LT NM L + ++++
Sbjct: 1439 LNASYLWDHCKVLKLTKNMRLLSGGLSSEE 1468
>At3g13250 hypothetical protein
Length = 1419
Score = 85.9 bits (211), Expect = 3e-18
Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++FCF ALDK+ +++ + DNK FGGKV V GDFRQVLPV+ A R +IV S+
Sbjct: 1051 MMSKFCFEALDKSFSDII--KRVDNKV--FGGKVMVFGGDFRQVLPVINGAGRAEIVMSS 1106
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQ 90
+NAS +W C+VLRLT NM L + + D+
Sbjct: 1107 LNASYLWDHCKVLRLTKNMRLLNNDLSVDE 1136
>At1g52960 hypothetical protein
Length = 924
Score = 85.5 bits (210), Expect = 4e-18
Identities = 42/81 (51%), Positives = 57/81 (69%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++ CF +LD+TLR++M + KPFGGK V GDFRQVLPV+ A R++IV +A
Sbjct: 583 MMSKHCFESLDRTLRDIMNNPGD----KPFGGKGIVFGGDFRQVLPVINGAGREEIVFAA 638
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W C+VL LT NM L
Sbjct: 639 LNSSYIWEHCKVLELTKNMRL 659
>At1g64410 unknown protein
Length = 753
Score = 85.1 bits (209), Expect = 5e-18
Identities = 42/81 (51%), Positives = 57/81 (69%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++ CF +LD+TLR++M + KPFGGKV V GDFRQVL V+ A R++IV +A
Sbjct: 633 MMSKHCFESLDRTLRDIMNNPGD----KPFGGKVIVFGGDFRQVLSVINGAGREEIVFAA 688
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W C+VL LT NM L
Sbjct: 689 LNSSYIWEHCKVLELTKNMRL 709
>At2g14470 pseudogene
Length = 1265
Score = 83.6 bits (205), Expect = 2e-17
Identities = 47/91 (51%), Positives = 62/91 (67%), Gaps = 5/91 (5%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM+RFCF ALDK+ +++ +N DN FGGKV V GDFRQV PV+ A R +IV S+
Sbjct: 913 MMSRFCFEALDKSFSDII--KNTDNTV--FGGKVVVFGGDFRQVFPVINGAGRAEIVMSS 968
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQE 91
+NAS +W C+VL+LT N L ANN ++ E
Sbjct: 969 LNASYLWDNCKVLKLTKNTRL-LANNLSETE 998
>At2g07620 putative helicase
Length = 1241
Score = 82.8 bits (203), Expect = 3e-17
Identities = 44/81 (54%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM+R+CF +LD++L +V+G N D K PFGGKV V GDFRQVL V+ A R +IV +A
Sbjct: 958 MMSRYCFESLDRSLNDVIG--NVDGK--PFGGKVVVFGGDFRQVLHVIHGAGRAEIVLAA 1013
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W C VL LT NM L
Sbjct: 1014 LNSSYLWEHCNVLTLTKNMSL 1034
>At3g30560 hypothetical protein
Length = 1473
Score = 81.3 bits (199), Expect = 8e-17
Identities = 36/81 (44%), Positives = 59/81 (72%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM+++CF +LDK+L++++ + + PFGGK+ + GDFRQ+LPV+ A R+ IV S+
Sbjct: 1108 MMSKYCFESLDKSLKDILSTP----EDMPFGGKLIIFGGDFRQILPVILAAGRELIVKSS 1163
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W+ C+V +LT NM L
Sbjct: 1164 LNSSHLWQYCKVFKLTKNMRL 1184
>At2g05080 putative helicase
Length = 1219
Score = 80.9 bits (198), Expect = 1e-16
Identities = 44/81 (54%), Positives = 56/81 (68%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM+R CF +LD++L ++ G N DNK PFGGKV V GDFRQVLPV+ A IV +A
Sbjct: 858 MMSRHCFESLDRSLSDICG--NCDNK--PFGGKVVVFGGDFRQVLPVIPGADTADIVMAA 913
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W C+VL LT NM L
Sbjct: 914 LNSSYLWSHCKVLTLTKNMCL 934
>At3g43350 putative protein
Length = 830
Score = 79.3 bits (194), Expect = 3e-16
Identities = 39/81 (48%), Positives = 56/81 (68%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++ CF +LD+TL++++ + KP GGKV V GDFRQVLPV+ A R++IV +A
Sbjct: 287 MMSKHCFESLDRTLKDIVNNPGD----KPLGGKVIVFGGDFRQVLPVINGAGREEIVFAA 342
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W +VL LT NM L
Sbjct: 343 LNSSYIWEHSKVLELTKNMRL 363
>At3g42340 putative protein
Length = 244
Score = 78.6 bits (192), Expect = 5e-16
Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
MM++ CF +LD+TLR+ M + + KPFGGKV V GDFRQVL V+ A R++IV +A
Sbjct: 1 MMSKHCFESLDRTLRDFMNNL----EDKPFGGKVIVFGGDFRQVLLVINGAGREEIVFAA 56
Query: 61 VNASKVWRRCEVLRLTMNMGL 81
+N+S +W C+V LT M L
Sbjct: 57 LNSSYIWEHCKVFELTKKMKL 77
>At1g54430 hypothetical protein
Length = 1639
Score = 76.3 bits (186), Expect = 3e-15
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M +R F A+D+TLR+++ ++ TK FGGK +L GDFRQ+LPV+ TRQ+ VS+A
Sbjct: 1262 MAHRHTFEAVDRTLRDILSVGDEKALTKTFGGKTVLLGGDFRQILPVIPQGTRQETVSAA 1321
Query: 61 VNASKVWRRCEVLRLTMNM 79
+N S +W C L+ NM
Sbjct: 1322 INRSYLWESCHKYLLSQNM 1340
>At4g04300 hypothetical protein
Length = 286
Score = 75.5 bits (184), Expect = 4e-15
Identities = 41/90 (45%), Positives = 58/90 (63%), Gaps = 4/90 (4%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M ++FCF ALDK+ +++ + DNK F GKV V GDFRQVLPV+ A R + V S+
Sbjct: 129 MKSKFCFEALDKSFSDII--KRVDNKV--FCGKVMVFGGDFRQVLPVINGAGRAETVMSS 184
Query: 61 VNASKVWRRCEVLRLTMNMGLSTANNNADQ 90
+NA +W C+VL+LT NM L + + D+
Sbjct: 185 LNAVYIWDHCKVLKLTKNMRLLNNDLSVDE 214
>At1g35940 hypothetical protein
Length = 1678
Score = 74.7 bits (182), Expect = 7e-15
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 8 VALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSAVNASKVW 67
V+LDK+ +++ K+ K FGGKV V GDFRQVLPV+ A R +IV S++NAS +W
Sbjct: 1316 VSLDKSFSDII----KNTNNKVFGGKVVVFGGDFRQVLPVINGAGRAEIVMSSLNASYLW 1371
Query: 68 RRCEVLRLTMNMGLSTANNNADQ 90
C+VL+LT NM L N +A +
Sbjct: 1372 DHCKVLKLTKNMRLLANNLSATE 1394
>At3g30420 hypothetical protein
Length = 837
Score = 73.6 bits (179), Expect = 2e-14
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
M +R F A+D+TLR+++ ++ TK GGK +L GDFRQ+LPV+ TRQ+ VS+A
Sbjct: 460 MAHRHTFEAVDRTLRDILSVGDEKALTKTLGGKTVLLGGDFRQILPVIPQRTRQETVSAA 519
Query: 61 VNASKVWRRCEVLRLTMNM 79
+N S +W C L+ NM
Sbjct: 520 INRSYLWESCHKYLLSQNM 538
>At2g14300 pseudogene; similar to MURA transposase of maize Mutator
transposon
Length = 1230
Score = 60.8 bits (146), Expect = 1e-10
Identities = 28/53 (52%), Positives = 39/53 (72%)
Query: 29 PFGGKVFVLVGDFRQVLPVVRVATRQQIVSSAVNASKVWRRCEVLRLTMNMGL 81
PFG KV + GDFRQ+L V+ A R+ IV S++N+S +W+ C+VL+LT NM L
Sbjct: 931 PFGRKVILFGGDFRQILHVIPAAGRELIVKSSLNSSYLWQHCKVLKLTKNMRL 983
>At4g03690 hypothetical protein
Length = 570
Score = 51.6 bits (122), Expect = 7e-08
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQI 56
MM+++CF +LDK LR+++ + + KP GGKV + GDFRQ+L V+ A R+ I
Sbjct: 303 MMSKYCFKSLDKRLRDIISTP----EDKPLGGKVILFGGDFRQILHVIVAAGRELI 354
>At5g28230 putative protein
Length = 171
Score = 42.7 bits (99), Expect = 3e-05
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 5 FCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSA 60
F +ALDK+ N++ + DNK GGKV V GDFRQVLP +R+ + V A
Sbjct: 78 FNMIALDKSFSNIL--KRVDNKV--LGGKVIVFGGDFRQVLPNMRLLNNKLSVDEA 129
>At5g37110 putative helicase
Length = 1307
Score = 40.4 bits (93), Expect = 2e-04
Identities = 21/39 (53%), Positives = 28/39 (70%), Gaps = 4/39 (10%)
Query: 1 MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVG 39
MM+R+CF +LD++L ++ G N DN KPFGGKV V G
Sbjct: 995 MMSRYCFESLDRSLSDICG--NGDN--KPFGGKVVVFGG 1029
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,902,927
Number of Sequences: 26719
Number of extensions: 59837
Number of successful extensions: 172
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 28
length of query: 93
length of database: 11,318,596
effective HSP length: 69
effective length of query: 24
effective length of database: 9,474,985
effective search space: 227399640
effective search space used: 227399640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC135565.5