BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135565.1 - phase: 0
(150 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g28050 putative cytidine deaminase - like 120 4e-28
At3g05300 unknown protein 103 3e-23
At1g68720 deaminase like protein 51 3e-07
At1g48175 unknown protein 36 0.009
At3g15050 hypothetical protein 32 0.13
At3g54450 oligopeptide transporter -like protein 29 1.1
At3g19060 hypothetical protein 27 4.1
At2g44700 unknown protein 27 4.1
At2g28220 putative chloroplast nucleoid DNA binding protein 27 4.1
At5g46600 putative protein 26 7.0
At4g23860 unknown protein 26 7.0
At3g02260 unknown protein 26 7.0
At2g44630 unknown protein 26 7.0
At4g14965 unknown 26 9.2
At3g21620 unknown protein 26 9.2
At3g15010 RNA-binding protein 26 9.2
At2g28300 unknown protein 26 9.2
>At5g28050 putative cytidine deaminase - like
Length = 185
Score = 120 bits (300), Expect = 4e-28
Identities = 67/149 (44%), Positives = 87/149 (57%), Gaps = 41/149 (27%)
Query: 1 MFLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRL 60
M L+ +PTAHAE+ AIREACKKL+K+ L+ CE+Y SCEPCPMCFGAIH S++K
Sbjct: 70 MVLKYTDPTAHAEVTAIREACKKLNKIELSECEIYASCEPCPMCFGAIHLSRLK------ 123
Query: 61 SFCLHNYTFLQSVLNYIDITYLSYIHIKQRMVYGATAEAARSIGFSNYIG---KGTDFHK 117
R+VYGA AEAA +IGF ++I +GT ++
Sbjct: 124 -----------------------------RLVYGAKAEAAIAIGFDDFIADALRGTGVYQ 154
Query: 118 ---FEIKKIDGIAAEIAEEVFEKTKDKVK 143
EIKK DG A IAE+VF+ TK+K +
Sbjct: 155 KSSLEIKKADGNGAAIAEQVFQNTKEKFR 183
>At3g05300 unknown protein
Length = 113
Score = 103 bits (258), Expect = 3e-23
Identities = 61/147 (41%), Positives = 79/147 (53%), Gaps = 44/147 (29%)
Query: 1 MFLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRL 60
M + K+PTAHAE+IAIREACKKL+++ L+ CE+Y SCEPCPMCFGAIH S++K
Sbjct: 1 MVFKYKDPTAHAEVIAIREACKKLNEIKLSECEIYASCEPCPMCFGAIHLSRLK------ 54
Query: 61 SFCLHNYTFLQSVLNYIDITYLSYIHIKQRMVYGATAEAARSIGFSNYIGKGTD----FH 116
R+VY A EAA +IGF+ + G +H
Sbjct: 55 -----------------------------RLVYEAKVEAALAIGFNRILADGVRGVGCYH 85
Query: 117 --KFEIKKIDGIAAEIAEEVFEKTKDK 141
EI K+D IAE+VF+ TK K
Sbjct: 86 NSNLEITKLD---LSIAEQVFQNTKGK 109
>At1g68720 deaminase like protein
Length = 1307
Score = 50.8 bits (120), Expect = 3e-07
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 6 KEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKV 53
++ TAHAE+I IRE K L LA LY + EPCPMC GAI ++V
Sbjct: 1154 RDSTAHAEMICIREGSKALRSWRLADTTLYVTLEPCPMCAGAILQARV 1201
>At1g48175 unknown protein
Length = 167
Score = 35.8 bits (81), Expect = 0.009
Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 9/58 (15%)
Query: 6 KEPTAHAEIIAIREACKKLDKVSLAG---------CELYTSCEPCPMCFGAIHFSKVK 54
+ T HAE+ AI + + K L+ C LY +CEPC MC A+ F +K
Sbjct: 38 RNATRHAEMEAIDQLVGQWQKDGLSPSQVAEKFSKCVLYVTCEPCIMCASALSFLGIK 95
>At3g15050 hypothetical protein
Length = 259
Score = 32.0 bits (71), Expect = 0.13
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 56 SMRRLSFCLHNYTFLQ---SVLNYIDITYLSYIHIKQRMVYGATAEAARSIGFSNYIGKG 112
S RR + + +T + + LN I Y I+ R +Y T + N +
Sbjct: 74 SARRFNSLIQGHTVMNQTSTALNVIHSWYDIQNQIRARRLYMVTQGRLQHKRLENRLKLE 133
Query: 113 TDFHKFEIKKIDGIAAEIAEEVFEKTKDKVKANLKRSR 150
H+ E++ G +E EE+ K + K +A +KR R
Sbjct: 134 IKLHELEVEWCGG--SETMEEILAKIQQKEEATVKRER 169
>At3g54450 oligopeptide transporter -like protein
Length = 488
Score = 28.9 bits (63), Expect = 1.1
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 39 EPCPMCFGAIHFSKVKASMRRLSFCLHNYTFLQSVLNYIDITYLSYIHIKQRMVYGATAE 98
+PC M F A F + A + NY ++ VL I L+ I I++R+ +
Sbjct: 65 KPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVL-ASSIAVLALIFIQERVSW----- 118
Query: 99 AARSIGFSNYIG 110
S+GFS G
Sbjct: 119 ---SLGFSIIAG 127
>At3g19060 hypothetical protein
Length = 1647
Score = 26.9 bits (58), Expect = 4.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 85 IHIKQRMVYGATAEAARSIGFSNYIGKGTDFHKFEIKKIDGIAAE 129
+ + +R++Y A+ A S+ N + T+ H FE+K+ D AE
Sbjct: 408 LKMAERLIYEASDCATASLIIVNRYSEVTESHTFELKQKDFQVAE 452
>At2g44700 unknown protein
Length = 368
Score = 26.9 bits (58), Expect = 4.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 90 RMVYGATAEAARSIGFSNYIGK 111
R+VYG + ARS+G Y GK
Sbjct: 288 RVVYGFDLDNARSVGIGEYYGK 309
>At2g28220 putative chloroplast nucleoid DNA binding protein
Length = 756
Score = 26.9 bits (58), Expect = 4.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 34 LYTSCEPCPMCFG--AIHFSKVKASMRRLSFCLHNYTFLQSVLNYIDITY 81
++T C PCP C+ A F K+S R C N + + Y D TY
Sbjct: 445 IWTQCMPCPNCYSQFAPIFDPSKSSTFREQRCNGNSCHYEII--YADKTY 492
>At5g46600 putative protein
Length = 539
Score = 26.2 bits (56), Expect = 7.0
Identities = 14/37 (37%), Positives = 20/37 (53%)
Query: 109 IGKGTDFHKFEIKKIDGIAAEIAEEVFEKTKDKVKAN 145
I G D HK I K+ G++ I V E ++K+K N
Sbjct: 212 IWSGDDLHKSTITKLQGLSRCIEACVSEYFEEKLKDN 248
>At4g23860 unknown protein
Length = 452
Score = 26.2 bits (56), Expect = 7.0
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 7 EPTAHAEIIAIREACKKLD---KVSLAGCELYTSCEPCP 42
E + AE +R+ +K+D V AGC + T CP
Sbjct: 291 ENSTEAEKFVVRKCSEKIDGSENVPAAGCVIRTDLNSCP 329
>At3g02260 unknown protein
Length = 5079
Score = 26.2 bits (56), Expect = 7.0
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 6 KEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRLSFCLH 65
K T H +I+ C DK S GC L P + F + + +++ R LS L
Sbjct: 588 KLDTGHIDILLNIVGCSIEDKASDGGCMLQDEGRPGHVAFELL-LNLLRS--RALSDFLE 644
Query: 66 NYTFLQ------SVLNYID--ITYLSYIHIKQRMVYGATAEAARSIGFSNYI 109
+Y F Q S NY D + L++ + + + GA A GF +++
Sbjct: 645 SYLFQQILVVENSDFNYNDKTLALLAHTLLCRPGLAGAQLRAKIYDGFVSFV 696
>At2g44630 unknown protein
Length = 372
Score = 26.2 bits (56), Expect = 7.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 90 RMVYGATAEAARSIGFSNYIGK 111
R+VYG + AR IG Y GK
Sbjct: 293 RVVYGLDLDKARCIGIGEYYGK 314
>At4g14965 unknown
Length = 245
Score = 25.8 bits (55), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 18 REACKKLDKVSLAGCELYTSCEP 40
R AC + D++ +G E+Y CEP
Sbjct: 216 RCACFEEDQLDQSGLEIYKDCEP 238
>At3g21620 unknown protein
Length = 756
Score = 25.8 bits (55), Expect = 9.2
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 3/45 (6%)
Query: 103 IGFSNYIGKGTDFHKFEIKKIDGIAAEIAEE---VFEKTKDKVKA 144
IGF G+ D I+KI+G+ +I+EE V TK V A
Sbjct: 275 IGFLGCWGEEVDAIDHYIEKIEGLTRKISEEKETVMSSTKSLVPA 319
>At3g15010 RNA-binding protein
Length = 404
Score = 25.8 bits (55), Expect = 9.2
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 91 MVYGATAEAARSIGFSNYIGKGTDFHKFEIKKIDGIAAEIAEEV 134
M YG E +GF GK F F K +G A +A+ V
Sbjct: 188 MAYGDVEEGP--LGFDKVTGKSRGFALFVYKTAEGAQAALADPV 229
>At2g28300 unknown protein
Length = 2218
Score = 25.8 bits (55), Expect = 9.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 3 LRNKEPTAHAEIIAIREACKKLDKVSLAGCELY-TSCEPCP 42
L N EP++ ++ + D+V AGCEL T C P
Sbjct: 1838 LANIEPSSSPSVVEKNIEAQDQDQVKTAGCELVSTGCSSEP 1878
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,027,553
Number of Sequences: 26719
Number of extensions: 109032
Number of successful extensions: 418
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 21
length of query: 150
length of database: 11,318,596
effective HSP length: 90
effective length of query: 60
effective length of database: 8,913,886
effective search space: 534833160
effective search space used: 534833160
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC135565.1