BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135504.5 - phase: 0 /pseudo
(1283 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g45520 copia-like polyprotein 390 e-108
At2g07550 putative retroelement pol polyprotein 380 e-105
At4g10460 putative retrotransposon 370 e-102
At2g21460 putative retroelement pol polyprotein 367 e-101
At2g13930 putative retroelement pol polyprotein 359 5e-99
At5g35820 copia-like retrotransposable element 353 4e-97
At1g37110 347 3e-95
At4g21360 putative transposable element 324 2e-88
At2g21310 putative retroelement pol polyprotein 318 1e-86
At1g47360 polyprotein, putative 281 2e-75
At4g04380 putative polyprotein 221 2e-57
At3g60170 putative protein 212 1e-54
At4g04280 putative transposon protein 208 1e-53
At1g32590 hypothetical protein, 5' partial 201 2e-51
At1g58140 hypothetical protein 193 5e-49
At3g61330 copia-type polyprotein 193 6e-49
At3g59720 copia-type reverse transcriptase-like protein 192 1e-48
At1g48710 hypothetical protein 190 4e-48
At2g19840 copia-like retroelement pol polyprotein 169 7e-42
At2g10610 pseudogene 166 6e-41
>At3g45520 copia-like polyprotein
Length = 1363
Score = 390 bits (1003), Expect = e-108
Identities = 233/611 (38%), Positives = 346/611 (56%), Gaps = 51/611 (8%)
Query: 3 GSKWDIEKFTGSNLFGLWKVKM---------RAILIQEKCVEALKREAQMSAHLTPAEKT 53
G++ ++EKF G + +WK K+ A+L + + +R+++ S E+
Sbjct: 3 GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEERE 62
Query: 54 EMND------KAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQL 107
+M KA S I+L + D++LR++ +ET+A +M LD LYM+K+L +R LKQ+L
Sbjct: 63 KMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKL 122
Query: 108 YFYRMMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGK 167
Y ++M E+ I + EF I+ DL N++V + DED+A+ LL +LP+ F+ KDT+ Y
Sbjct: 123 YSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSS 182
Query: 168 EGTI-TLEEVQATLITKELTKFKDLKVDDSG--EGLNV-----SRGRNQNRGKGKGKNSK 219
T+ +L+EV A + ++EL +F +K G EGL V +RGR++ + KGKGK SK
Sbjct: 183 GKTVLSLDEVAAAIYSREL-EFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSK 241
Query: 220 SKSRSKGDGNKTKYKCFICHNPGHFKKDCPERKD----NGGGNPSVQLASKD---EGC-- 270
SKS K C+IC GH K CP + N G N K EG
Sbjct: 242 SKS---------KRGCWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSGGKGNLVEGSVN 292
Query: 271 --ESAG-----ALTVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKAC 323
ESAG AL+ T E W++D+GC YH++ ++ + E + E GG VR+GN
Sbjct: 293 FVESAGMFVSEALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSIS 352
Query: 324 KIQGIGTIRLKMFDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGAL 383
+++G+GT+R+ + L++VRYIP++ RNL+S+ F+ G+ E G++RI G
Sbjct: 353 RVKGVGTVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESENGMLRIKSGNQ 412
Query: 384 VIAKGSKIHGLYILEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGN 443
V+ +G + LYIL G S+ D T LWH RL H+S++ + L K+G L
Sbjct: 413 VLLEGRRYDTLYILHGKPA-TDESLAVARANDDTVLWHRRLCHMSQKNMSLLIKKGFLDK 471
Query: 444 EKLNKLDFCDNCTLGKQHKVKFGVGVHKSSRPFE*VHSDLLG-PA*VKTYGGGSYFTSII 502
+K++ LD C++C G+ K+ F + H + + E VHSDL G P + G YF S I
Sbjct: 472 KKVSMLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVHSDLWGAPTVPMSLGNCQYFISFI 531
Query: 503 DDYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKK 562
DDY+R+VWVY LK K +AFEKF W LVENQ G ++K LRTDNG EF F+ FC +K
Sbjct: 532 DDYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCEEK 591
Query: 563 GIKRHRIVAYT 573
G +RHR AYT
Sbjct: 592 GFQRHRTCAYT 602
Score = 108 bits (271), Expect = 2e-23
Identities = 48/102 (47%), Positives = 75/102 (73%)
Query: 1179 CVYIVWYNSNLEAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLH 1238
C Y+ + EAIWLKG++ + G Q V+I CDSQSAI L+ + ++HERTKHI+++ H
Sbjct: 1257 CEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHHERTKHIDVKFH 1316
Query: 1239 FVRDMIETKEIKVEKVASEENPADIFTKSLPRSRFKHCLDLI 1280
F+R++I +++V K+++E+NPADIFTK LP ++F+ LD +
Sbjct: 1317 FIREIIADGKVEVSKISTEKNPADIFTKVLPVNKFQTALDFL 1358
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 380 bits (977), Expect = e-105
Identities = 224/599 (37%), Positives = 333/599 (55%), Gaps = 42/599 (7%)
Query: 7 DIEKFTGSNLFGLWKVKMRAILIQEKCVEALKREAQMSAHLTPAEKT------------- 53
++EKF G + +WK K+ A + ALK + +++
Sbjct: 7 EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66
Query: 54 --EMNDKAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQLYFYR 111
E KA SAI+L + D++LR++ +E+TA +M LD LYM+K+L +R KQ+LY ++
Sbjct: 67 LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFK 126
Query: 112 MMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGK-EGT 170
M E+ + + EF +II DL N++V + DED+A+ LL ALP++F+ KDT+ Y +
Sbjct: 127 MSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSI 186
Query: 171 ITLEEVQATLITKEL---TKFKDLKVDDSG---EGLNVSRGRNQNRGKGKGKNSKSKSRS 224
+TL+EV A + +KEL + K +KV G + N ++G+ + +GKGKGK KSK
Sbjct: 187 LTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKGKSKK-- 244
Query: 225 KGDGNKTKYKCFICHNPGHFKKDCPERKDNGGGNPSVQLASKDEG----CESAG-----A 275
K C+ C GHF+ CP + V G E+AG A
Sbjct: 245 -------KPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVKGESSGGKGNLAEAAGYYVSEA 297
Query: 276 LTVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKM 335
L+ T E W+LD+GCSYH++ ++ +F + GG VR+GN +++G+GTIR+K
Sbjct: 298 LSSTEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKN 357
Query: 336 FDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGALVIAKGSKIHGLY 395
D +L +VRYIP++ RNL+S+ F+ GY E G++RI G V+ G + LY
Sbjct: 358 SDGLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRIKAGNQVLLTGRRYDTLY 417
Query: 396 ILEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGNEKLNKLDFCDNC 455
+L +A S+ V D T LWH RL H+S++ + L ++G L +K++ LD C++C
Sbjct: 418 LLNWKP-VASESLAVVKRADDTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDC 476
Query: 456 TLGKQHKVKFGVGVHKSSRPFE*VHSDLLG-PA*VKTYGGGSYFTSIIDDYSRRVWVYIL 514
GK + F + H + E +HSDL G P + G YF SIIDD++R+VWVY +
Sbjct: 477 IYGKAKRKSFSLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFM 536
Query: 515 KNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYT 573
K K +AFEKF EW LVENQ ++K LRTDNG EF + F+ FC GI RHR AYT
Sbjct: 537 KTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYT 595
Score = 103 bits (257), Expect = 6e-22
Identities = 46/91 (50%), Positives = 70/91 (76%)
Query: 1190 EAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEI 1249
EAIWLKG++ + G Q V+I CDSQSAI L+ + ++HERTKHI+++ HF+R++I +
Sbjct: 1261 EAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDGTV 1320
Query: 1250 KVEKVASEENPADIFTKSLPRSRFKHCLDLI 1280
+V K+++E+NPADIFTK L S+F+ L+L+
Sbjct: 1321 EVLKISTEKNPADIFTKVLAVSKFQAALNLL 1351
>At4g10460 putative retrotransposon
Length = 1230
Score = 370 bits (951), Expect = e-102
Identities = 222/598 (37%), Positives = 323/598 (53%), Gaps = 56/598 (9%)
Query: 7 DIEKFTGSNLFGLWKVKMRAILIQEKCVEALKREAQMSAHLTPAEK-------------T 53
++EKF G + LWK K+ A + AL+ +S L E+
Sbjct: 7 EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66
Query: 54 EMNDKAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQLYFYRMM 113
E KA S I+L + D++LR+ +E TA SM LD LYM+K+L +R LKQ+LY Y+M
Sbjct: 67 EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQ 126
Query: 114 ESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGK-EGTIT 172
E+ + + EF ++I DL N +V + DED+A+ LL +LP+ F+ KDT+ YG T++
Sbjct: 127 ENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLS 186
Query: 173 LEEVQATLITKELTKFKDLK-VDDSGEGLNVS---RGRNQNRGKGKGKNSKSKSRSKGDG 228
++EV A + +KEL + K + EGL V R + K KG +S+SRSKG
Sbjct: 187 VDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKGNKGRSRSRSKGWK 246
Query: 229 NKTKYKCFICHNPGHFKKDCPER-------KDNGGGNPSVQLASKDEGCESAG-----AL 276
C+IC GHFK CP + KD G+ K E +G AL
Sbjct: 247 G-----CWICGEEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSEGSGYYVSEAL 301
Query: 277 TVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKMF 336
T WV+D+GC+YH++ +K +FE L + GG VR+GN K +
Sbjct: 302 HSTDVNLGNEWVMDTGCNYHMTHKKEWFEELSEDAGGTVRMGNKSTSKFR---------- 351
Query: 337 DDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGALVIAKGSKIHGLYI 396
V+YIP++ RNL+S+ + GY + GV+ + G + GS+ LY+
Sbjct: 352 ---------VKYIPDMDRNLLSMGTLEEHGYSFESKNGVLVVKEGTRTLLIGSRHEKLYL 402
Query: 397 LEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGNEKLNKLDFCDNCT 456
L+G ++H S+ D T LWH RLGH+S++ + L K+G L +K++KL+ C++C
Sbjct: 403 LQGKPEVSH-SMTVERRNDDTVLWHRRLGHISQKNMDILVKKGYLDGKKVSKLELCEDCI 461
Query: 457 LGKQHKVKFGVGVHKSSRPFE*VHSDLLG-PA*VKTYGGGSYFTSIIDDYSRRVWVYILK 515
GK ++ F V H + VHSDL G P+ + G YF S ID YSR+ WVY LK
Sbjct: 462 YGKARRLSFVVATHNTEDKLNYVHSDLWGAPSVPLSLGKCQYFISFIDVYSRKTWVYFLK 521
Query: 516 NKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYT 573
+K +AF F EW ++VENQ G K+K+LR DNG EF +QFN+FC++KGI RH+ AYT
Sbjct: 522 HKDEAFGTFAEWSVMVENQTGRKIKILRIDNGLEFCNQQFNDFCKEKGIVRHQTCAYT 579
Score = 93.2 bits (230), Expect = 9e-19
Identities = 43/88 (48%), Positives = 64/88 (71%)
Query: 1190 EAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEI 1249
EAIWLKG++ + G Q V+I CDSQSAI L+ + ++H+RTKHI+I+ H +R++I +
Sbjct: 1135 EAIWLKGLLQDFGYEQKTVEIFCDSQSAIALSKNNVHHDRTKHIDIKYHKIREVIADGVV 1194
Query: 1250 KVEKVASEENPADIFTKSLPRSRFKHCL 1277
+V+K+ + N ADIFTK +P S+FK L
Sbjct: 1195 EVKKICTLVNSADIFTKVVPVSKFKTAL 1222
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 367 bits (943), Expect = e-101
Identities = 227/590 (38%), Positives = 333/590 (55%), Gaps = 46/590 (7%)
Query: 7 DIEKFTGSNLFGLWKVKMRAILIQEKCVEALKREAQMSAHLTPAEKTEMNDK-------- 58
++EKF G + +WK K+ A L ALK E + + + TE +K
Sbjct: 7 EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66
Query: 59 -------AVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQLYFYR 111
A SAI+L + D++LR++ +E +A +M LD LYM+K+L +R KQ+LY ++
Sbjct: 67 LEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFK 126
Query: 112 MMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGK-EGT 170
M E+ I + EF +II DL N +V + DED+A+ LL +LP+ F+ +DT+ YG T
Sbjct: 127 MSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVT 186
Query: 171 ITLEEVQATLITKELTKFKDLK-VDDSGEGLNV-----SRGRNQNRGKGKGKNSKSKSRS 224
++L+EV A + +KEL + K + EGL V +RGR + RG N+ KSRS
Sbjct: 187 LSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNN---NNNKKSRS 243
Query: 225 KGDGNKTKYKCFICHNPGHFKKDCPERKDNGGGNPSVQLASKDEGCESAGALTVTSWEPE 284
K +++K C+IC NG N S+ G + AL+ T E
Sbjct: 244 K---SRSKKGCWICGE-----------SSNGSSN-----YSEANGLYVSEALSSTDIHLE 284
Query: 285 KGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKMFDDRDFLLK 344
WV+D+GCSYH++ ++ +FE L + GG VR+GN K++GIGTIR+K L
Sbjct: 285 DEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLT 344
Query: 345 DVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGALVIAKGSKIHGLYILEGSTIIA 404
+VRYIPE+ RNL+S+ F+ GY ++E G + I G V+ + + LY+L+ +
Sbjct: 345 NVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPV-T 403
Query: 405 HASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGNEKLNKLDFCDNCTLGKQHKVK 464
S+ V D T LWH RLGH+S++ + L K+GLL +K++KL+ C++C GK ++
Sbjct: 404 EESLSVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKAKRIG 463
Query: 465 FGVGVHKSSRPFE*VHSDLLG-PA*VKTYGGGSYFTSIIDDYSRRVWVYILKNKSDAFEK 523
F + H + E VHSDL G P+ + G YF S IDDY+R+V +Y LK K +AF+K
Sbjct: 464 FNLAQHDTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAFDK 523
Query: 524 FKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYT 573
F EW LVENQ ++K LRTDNG EF F+EFC +KGI HR AYT
Sbjct: 524 FVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYT 573
Score = 99.0 bits (245), Expect = 2e-20
Identities = 44/91 (48%), Positives = 67/91 (73%)
Query: 1190 EAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEI 1249
EA+W+KG++ E G Q V+I CDSQSAI L+ + ++HERTKHI++R ++RD+I +
Sbjct: 1238 EAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIRDIIANGDG 1297
Query: 1250 KVEKVASEENPADIFTKSLPRSRFKHCLDLI 1280
V K+ +E+NPADIFTK +P ++F+ L L+
Sbjct: 1298 DVVKIDTEKNPADIFTKIVPVNKFQAALTLL 1328
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 359 bits (922), Expect = 5e-99
Identities = 207/551 (37%), Positives = 302/551 (54%), Gaps = 28/551 (5%)
Query: 38 KREAQMSAHLTPAEKTEMNDKAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSL 97
KR+A A L E DKA + I L + DK+LR++ TA W LD L+M +SL
Sbjct: 34 KRDADEVARL------ERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSL 87
Query: 98 AHRQCLKQQLYFYRMMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFE 157
HR + Y ++M E+K I E + +F KI+ DL ++ +++ DE +A+ LL +LP ++
Sbjct: 88 PHRVYTQLSFYTFKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYD 147
Query: 158 NFKDTMLYGKEGT-ITLEEVQATLITKELTKFKDLKVDDSGEGLNVSRGRNQNRGKGKGK 216
+TM Y + L++V KE ++ + G + +RGR + +G
Sbjct: 148 GLVETMKYSNSREKLRLDDVMVAARDKERELSQNNRPVVEG---HFARGRPDGKNNNQGN 204
Query: 217 NSKSKSRSKG-DGNKTKYKCFICHNPGHFKKDC------PERKDNGGGNPSVQLASKDEG 269
K++SRSK DG + C+IC GHFKK C + K G N LA E
Sbjct: 205 KGKNRSRSKSADGKRV---CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEA 261
Query: 270 CESAGALTVTSW------EPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKAC 323
A L T WVLD+GCS+H++PRK +F+ + G V++GN+
Sbjct: 262 FNPAMVLLATDETLVVTDSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYS 321
Query: 324 KIQGIGTIRLKMFDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGAL 383
++GIG+I+++ D +L DVRY+P + RNLIS+ + G + + G+++I G
Sbjct: 322 PVKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCS 381
Query: 384 VIAKGSKIHGLYILEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGN 443
I KG K LYIL+G T S S + D T LWH RLGH+S++G+ L K+G L
Sbjct: 382 TILKGQKRDTLYILDGVTEEGE-SHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRR 440
Query: 444 EKLNKLDFCDNCTLGKQHKVKFGVGVHKSSRPFE*VHSDLLG-PA*VKTYGGGSYFTSII 502
E + +L+FC++C GKQH+V F H + VHSDL G P + G YF S +
Sbjct: 441 EVIKELEFCEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFV 500
Query: 503 DDYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKK 562
DDYSR+VW+Y L+ K +AFEKF EW +VENQ K+K LRTDNG E+ F +FC+++
Sbjct: 501 DDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEE 560
Query: 563 GIKRHRIVAYT 573
GI RH+ AYT
Sbjct: 561 GIVRHKTCAYT 571
Score = 108 bits (271), Expect = 2e-23
Identities = 51/91 (56%), Positives = 72/91 (79%)
Query: 1190 EAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEI 1249
EA+WLKG E+G SQ V++H DSQSAI LA + ++HERTKHI+IRLHF+RD+I I
Sbjct: 1240 EALWLKGFAAELGHSQDYVEVHSDSQSAITLAKNSVHHERTKHIDIRLHFIRDIICAGLI 1299
Query: 1250 KVEKVASEENPADIFTKSLPRSRFKHCLDLI 1280
KV K+A+E NPA+IFTK++P ++F+ L+++
Sbjct: 1300 KVVKIATECNPANIFTKTVPLAKFEGALNML 1330
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 353 bits (906), Expect = 4e-97
Identities = 223/599 (37%), Positives = 321/599 (53%), Gaps = 55/599 (9%)
Query: 7 DIEKFTGSNLFGLWKVKMRAILI-----------QEKCVEALKREAQMSAHLTPAEKT-- 53
++EKF G + LWK K+ A + +E VE E + P T
Sbjct: 7 EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66
Query: 54 -------EMNDKAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQ 106
E KA S IIL LG+ +LR+V ++ TA M LD L+M KSL +R LKQ+
Sbjct: 67 LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQR 126
Query: 107 LYFYRMMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYG 166
LY Y+M E+ + E + +F K+I DL N+ V + DED+A+ LL +LPR F+ K+T+ Y
Sbjct: 127 LYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYC 186
Query: 167 KEGTITLEEVQATLITKELTKFKDLK-VDDSGEGLNV-SRGRNQNRGKGKGKNSKSKSRS 224
K T+ LEE+ + + +K L K + ++ +GL V RGR++ RGKG KN KS+S+S
Sbjct: 187 KT-TLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKN-KSRSKS 244
Query: 225 KGDGNKTKYKCFICHNPGHFKKDC---PERKDNGGGNPSVQLASKDEGCESAGALTVT-- 279
KG G C+IC GHFKK C ER G + + ++ A AL V+
Sbjct: 245 KGAGK----TCWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALVVSRA 300
Query: 280 ----SWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKM 335
+ W+LD+GCS+H++ RK + + G VR+GN+ +++GIG +R+K
Sbjct: 301 LLGFAEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKN 360
Query: 336 FDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGALVIAKGSKIHGLY 395
D LL DVRYIPE+ +NLIS+ + G ++G++ I L + G K LY
Sbjct: 361 EDGSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLY 420
Query: 396 ILEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGNEKLNKLDFCDNC 455
L+G+T+ A+V + D T LWH RLGH+ +GL L +G
Sbjct: 421 FLQGTTLAGEANVIDKEK-DETSLWHSRLGHIGAKGLQVLVSKG---------------- 463
Query: 456 TLGKQHKVKFGVGVHKSSRPFE*VHSDLLGPA*VK-TYGGGSYFTSIIDDYSRRVWVYIL 514
L K + FG H + + VHSDL G V + G YF + IDD++RR W+Y +
Sbjct: 464 HLDKNIMISFGAAKHVTKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFI 523
Query: 515 KNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYT 573
+ K +AF KF EW +ENQ KLK+L TDNG EF ++F+ FCRK+G+ RHR AYT
Sbjct: 524 RTKDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYT 582
Score = 105 bits (262), Expect = 2e-22
Identities = 47/91 (51%), Positives = 68/91 (74%)
Query: 1190 EAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEI 1249
EAIWL+G+ EMG Q V++ CDSQSAI L+ + ++HERTKHI++R HF+R+ I EI
Sbjct: 1247 EAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIREKIADGEI 1306
Query: 1250 KVEKVASEENPADIFTKSLPRSRFKHCLDLI 1280
+V K+++ NPADIFTK++P S+ + L L+
Sbjct: 1307 QVVKISTTWNPADIFTKTVPVSKLQEALKLL 1337
>At1g37110
Length = 1356
Score = 347 bits (890), Expect = 3e-95
Identities = 205/591 (34%), Positives = 320/591 (53%), Gaps = 29/591 (4%)
Query: 7 DIEKFTGSNLFGLWKVKMRAIL------------IQEKCVEALKREAQMSA--------- 45
+I+ F G F LWK++++A L K V K EA+ +
Sbjct: 9 EIKVFNGDRDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESGDGESSGTK 68
Query: 46 HLTPAEKTEMNDKAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQ 105
+ K E +++A + II + D +L +V+ T +W L+ YM SL +R +
Sbjct: 69 EVPDPVKIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYTQL 128
Query: 106 QLYFYRMMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLY 165
+LY ++M+ + I + + EF +I+ +L ++++ +++E +A+ +L +LP S K T+ Y
Sbjct: 129 KLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKY 188
Query: 166 GKEGTITLEEV--QATLITKELTKFKDLKVDDSGEGLNVSRGRNQNRGKGKGKNSKSKSR 223
G + T+T+++V A + +EL + DL + RGR R KG K +SR
Sbjct: 189 GNK-TLTVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSR 247
Query: 224 SKGDGNKTKYKCFICHNPGHFKKDCPERKDNGGGNPSVQLASKDEGCESAGALTVTSWEP 283
S +KTK C+ C GH KKDC RK + E + AL+V
Sbjct: 248 SN---SKTKVPCWYCKKEGHVKKDCYSRKKKMESEGQGEAGVITEKLVFSEALSVNEQMV 304
Query: 284 EKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKMFDDRDFLL 343
+ W+LDSGC+ H++ R+ +F + + + + LG++ + + QG GTIR+ +L
Sbjct: 305 KDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIKIL 364
Query: 344 KDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGALVIAKGSKIHGLYILEGSTII 403
++V+Y+P LRRNLIS D LGY G +R +GS +GLY+L+GST++
Sbjct: 365 ENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDGSTVM 424
Query: 404 AHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGNEKLNKLDFCDNCTLGKQHKV 463
+ D + T LWH RLGH+S L LA +GL+ +++N+L+FC++C +GK KV
Sbjct: 425 SELCNAETDKVK-TALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGKSKKV 483
Query: 464 KFGVGVHKSSRPFE*VHSDLLG-PA*VKTYGGGSYFTSIIDDYSRRVWVYILKNKSDAFE 522
F VG H S VH+DL G P + G YF SIIDD +R+VW+Y LK+K + F+
Sbjct: 484 SFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFD 543
Query: 523 KFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYT 573
KF EW LVENQ+ K+K LRTDNG EF +F+ +C++ GI+RHR YT
Sbjct: 544 KFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYT 594
Score = 102 bits (255), Expect = 1e-21
Identities = 44/103 (42%), Positives = 72/103 (69%)
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFV 1240
YI + EA+W+KG++ +MG+ Q VKI CDSQSAI L+ + +YHERTKHI++R +++
Sbjct: 1251 YIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHERTKHIDVRFNYI 1310
Query: 1241 RDMIETKEIKVEKVASEENPADIFTKSLPRSRFKHCLDLINFI 1283
RD++E+ ++ V K+ + NP D TK +P ++FK L ++ +
Sbjct: 1311 RDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVLKLM 1353
>At4g21360 putative transposable element
Length = 1308
Score = 324 bits (830), Expect = 2e-88
Identities = 199/606 (32%), Positives = 330/606 (53%), Gaps = 57/606 (9%)
Query: 2 MGSKWDIEKFTGSNLFGLWKVKMRA-------------------ILIQEKCVEALKREAQ 42
M +K +I+ F G F LWK+++ A IL+ V++ K+E++
Sbjct: 3 MSTKVEIKTFNGDRDFSLWKIRIEAQLGVLGLKPALSDFTLTKTILV----VKSEKKESE 58
Query: 43 MSAHLTPAEKTE---------MNDKAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYM 93
T ++KTE +D+A + II + D +L +V TA +W L+ L+M
Sbjct: 59 SEDDETDSKKTEEVPDPIKFEQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNKLFM 118
Query: 94 TKSLAHRQCLKQQLYFYRMMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALP 153
SL +R + +LY ++M+++ I + EF +I+ +L ++ + + +E +A+ +L +LP
Sbjct: 119 ETSLPNRIYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLP 178
Query: 154 RSFENFKDTMLYGKEGTITLEEV--QATLITKELTKFKDLKVDDSGEGLNVSRGRNQNRG 211
S+ K T+ YG + T+++++V A + +EL++ K+ + L + RG
Sbjct: 179 PSYIQLKHTLKYGNK-TLSVQDVVSSAKSLERELSEQKETIRAPASTALYTAE-----RG 232
Query: 212 KGKGKNSKSKSRSKGDGN-KTKYKCFICHNPGHFKKDCPERK---DNGGGNPSVQLASKD 267
+ + KN++ + + +G N K++ C+ C GH KKDC K +N G + + K
Sbjct: 233 RPQTKNTQGQGKGRGRSNSKSRLTCWFCKKEGHVKKDCYAGKRKLENEGQGKAGVITEKL 292
Query: 268 EGCESAGALTVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQG 327
E AL++ E + WV+DSGC+YH++ R +F E ++ LG++ + +G
Sbjct: 293 VYSE---ALSMYDQEAKDKWVIDSGCTYHMTSRMDWFSEFNENETTMILLGDDHTVESKG 349
Query: 328 IGTIRLKMFDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGALVIAK 387
GT+++ +LK+VR++P LRRNLIS D LGY G +R
Sbjct: 350 SGTVKVNTHGGSIRVLKNVRFVPNLRRNLISTGTLDKLGYKHEGGDGKVRFYKENKTALC 409
Query: 388 GSKIHGLYILEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGNEKLN 447
G+ ++GLY+L+G T++ + + + + T+LWH RLGH+S + LA++GLL + +
Sbjct: 410 GNLVNGLYVLDGHTVV-NENCNVEGSNEKTELWHCRLGHMSLNNMKILAEKGLLEKKDIK 468
Query: 448 KLDFCDNCTLGKQHKVKFGVGVHKSSRPFE*VHSDLLGPA*VKTYGGGSYFTSIIDDYSR 507
+L FC+NC +GK K+ F VG H + +H+DL G YF SIIDD SR
Sbjct: 469 ELSFCENCVMGKSKKLSFNVGKHITDEVLGYIHADLWGK---------QYFLSIIDDKSR 519
Query: 508 RVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRH 567
+VW+ LK K + FE+F EW LVENQ+ K+K+LRTDNG EF +F+EFC++ GI+RH
Sbjct: 520 KVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFCNLKFDEFCKQNGIERH 579
Query: 568 RIVAYT 573
R YT
Sbjct: 580 RTCTYT 585
Score = 97.1 bits (240), Expect = 6e-20
Identities = 39/91 (42%), Positives = 65/91 (70%)
Query: 1190 EAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEI 1249
EAIW++G++ +MG+ + CDSQSAI L+ + +H+RTKH+ ++ +F+RD+IE E+
Sbjct: 1214 EAIWIRGLLEDMGLQPKPATVWCDSQSAICLSKNNAFHDRTKHVEVKFYFIRDIIEAGEV 1273
Query: 1250 KVEKVASEENPADIFTKSLPRSRFKHCLDLI 1280
KV K+ + NPAD+ TK +P +F+ LD++
Sbjct: 1274 KVRKIHTSVNPADMLTKCIPVKKFEEALDVL 1304
>At2g21310 putative retroelement pol polyprotein
Length = 838
Score = 318 bits (816), Expect = 1e-86
Identities = 201/587 (34%), Positives = 326/587 (55%), Gaps = 33/587 (5%)
Query: 7 DIEKFTGSNLFGLWKVKMRAI---------LIQEKCVEALKREAQMSAHLTPAEKT---E 54
++EK G + LWK K+ A L +++ +E + A+ + LT E E
Sbjct: 7 EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66
Query: 55 MNDKAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQLYFYRMME 114
KA S +IL LG+ +LR+V +E TA M LD L+M KSL +R LKQ+LY Y+M +
Sbjct: 67 KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126
Query: 115 SKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLE 174
S I E + +F K+I DL N+ V++ DED+A+ LL +LP+ F+ KDT+ YGK T+ L+
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALD 185
Query: 175 EVQATLITKELTKFKDLK-VDDSGEGLNV-SRGRNQNRGKGKGKNSKSKSRSKGDGNKTK 232
E+ + +K L K + +S + L V RGR++ R K +N KS+SRSK ++ K
Sbjct: 186 EITGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERN-KSQSRSK---SREK 241
Query: 233 YKCFICHNPGHFKKDC---PERKDNGGGNPSVQLASKDEGCESAGALTV------TSWEP 283
C++C GHFKK C E+ G + + ++ A AL V + E
Sbjct: 242 KVCWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVIGQAADAAALAVREESNADNQEV 301
Query: 284 EKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKMFDDRDFLL 343
+ W++D+GCS+H++PR+ +F + + G V++ N +I+GIG+IR++ D+ LL
Sbjct: 302 DNEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSIRIQNDDNTTVLL 361
Query: 344 KDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGALVIAKGSKIHGLYILEGSTII 403
K+VRY+P + +NLIS+ + G + + G +++ G + + KG K+ LY+L+G +
Sbjct: 362 KNVRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLLKGKKVGTLYLLQGVVVT 421
Query: 404 AHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGNEKLNKLDFCDNCTLGKQHKV 463
+A+ + + D +K+WH RL H+S+R + L K+G L EK+N L+FC++C GK H+V
Sbjct: 422 GNANAVT-SSKDESKIWHSRLCHMSQRNIDVLIKKGCLQAEKINGLEFCEDCVYGKTHRV 480
Query: 464 KFGVGVHKSSRPFE*VHSDLLG-PA*VKTYGGGSYFTSIIDDYSRRVWVYILKNKSDAFE 522
FG H + E +HSDL G P+ + G YF + IDD +R+ + + K
Sbjct: 481 GFGSAKHVTREKLEYIHSDLWGAPSVPNSLGNCQYFITFIDDLTRKNKETVKELKERLSS 540
Query: 523 KFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRI 569
+F+ D+ +I L + T N +E +LE +K +K R+
Sbjct: 541 EFEMKDLGPARKI---LGMEITRNREENILELSQRSYLQKVLKTFRM 584
Score = 105 bits (261), Expect = 2e-22
Identities = 49/97 (50%), Positives = 66/97 (67%)
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFV 1240
YI + EA WLK ++ E+G QG V IHCDSQSAI LA + ++HERTKHI R H++
Sbjct: 734 YIALTEAAKEAYWLKDLMNELGFKQGAVDIHCDSQSAIALAKNAVHHERTKHIQRRFHYI 793
Query: 1241 RDMIETKEIKVEKVASEENPADIFTKSLPRSRFKHCL 1277
RD I E+KV K+++ NP+DIFTK +P ++F L
Sbjct: 794 RDAITDGEVKVLKISTVHNPSDIFTKVVPVNKFLSAL 830
>At1g47360 polyprotein, putative
Length = 1182
Score = 281 bits (719), Expect = 2e-75
Identities = 191/582 (32%), Positives = 282/582 (47%), Gaps = 71/582 (12%)
Query: 8 IEKFTGSNLFGLWKVKMRAILIQEKCVEALKREAQMSAHLTPAEKTEMNDKAVSAIILCL 67
I F S F LWK ++ A L V LK + + +TP E D I LC
Sbjct: 6 IAVFDESGDFSLWKTRIMAHL----SVIGLK-DVVIGKTITPLTAEEEEDPE-KKIELC- 58
Query: 68 GDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQLYFYRMMESKPIMEQLTEFNK 127
TA W LD L+M +SL HR + Y ++M E+K I E + +F K
Sbjct: 59 -----------QTAQEAWETLDRLFMIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLK 107
Query: 128 IIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGT-ITLEEVQATLITKELT 186
I+ DL ++ + + DE +A+ LL +LP ++ +TM Y + L++V KE
Sbjct: 108 IVADLNHLQIEVTDEVQAILLLSSLPARYDGLVETMKYSNSREKLRLDDVMVGARDKERE 167
Query: 187 KFKDLKVDDSGEGLNVSRGRNQNRGKGKGKNSKSKSRSKG-DGNKTKYKCFICHNPGHFK 245
++ + G + +RGR + + +G K++SRSK DG + C+IC GHFK
Sbjct: 168 LSQNNRPVAEG---HYARGRPEGKNNNQGNKGKNRSRSKSADGKRV---CWICGKEGHFK 221
Query: 246 KDC------PERKDNGGGNPSVQLASKDEGCESA-------GALTVTSWEPEKGWVLDSG 292
K C + K G LA E + A L VT + ++ W LD+G
Sbjct: 222 KQCYKWLERNKSKQQGSDVGESSLAKSSEIFDPAMVIMATGETLLVTGRDADE-WFLDTG 280
Query: 293 CSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKMFDDRDFLLKDVRYIPEL 352
CS+H++PR+ F+ + G V++GN+ ++GIG+I+++ D +L DVRY+P +
Sbjct: 281 CSFHMTPRRDLFKDFKELSSGFVKMGNDTYSPVKGIGSIKIRNNDGTQVILTDVRYVPNM 340
Query: 353 RRNLISISMFDGLGYCTRIERGVMRISHGALVIAKGSKIHGLYILEGSTIIAHASVPSVD 412
RNLIS+ + G + + GV++I G I KG K LYILEG S S +
Sbjct: 341 ARNLISLGTLEDKGCWFKSQDGVLKIVKGCSTILKGQKRETLYILEGLAENGE-SHSSAE 399
Query: 413 TLDITKLWHLRLGHVSERGLVELAKQGLLGNEKLNKLDFCDNCTLGKQHKVKFGVGVHKS 472
D T LWH RLGH+S++G+ L K+ L E + +L FC++C GK H+V F H +
Sbjct: 400 LKDETSLWHSRLGHMSQKGMEILVKKDCLQRETIKELKFCEDCVYGKNHRVSFAPAQHVT 459
Query: 473 SRPFE*VHSDLLG-PA*VKTYGGGSYFTSIIDDYSRRVWVYILKNKSDAFEKFKEWDILV 531
+HSDL G P + G YF S +DDYSR+
Sbjct: 460 KEKLAYIHSDLWGSPHNPASLGNCQYFISFVDDYSRK----------------------- 496
Query: 532 ENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYT 573
K+K LRTDNG E+ F +FC+ +GI RH+ AYT
Sbjct: 497 ------KVKKLRTDNGLEYCNHYFEKFCKDEGIVRHKTCAYT 532
Score = 100 bits (248), Expect = 7e-21
Identities = 47/91 (51%), Positives = 67/91 (72%)
Query: 1190 EAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEI 1249
EA+WLKG+ E+G Q V++HCDSQS I LA + ++HE TKHI+I LHFVRD+I +I
Sbjct: 1087 EALWLKGLANELGFPQKDVEVHCDSQSVIALAKNSVHHENTKHIDIMLHFVRDVITEGKI 1146
Query: 1250 KVEKVASEENPADIFTKSLPRSRFKHCLDLI 1280
++ K+ASE N ADIFTK L ++ + L+++
Sbjct: 1147 RLVKIASECNTADIFTKVLLVNKLEGALNML 1177
>At4g04380 putative polyprotein
Length = 778
Score = 221 bits (563), Expect = 2e-57
Identities = 116/300 (38%), Positives = 172/300 (56%), Gaps = 2/300 (0%)
Query: 275 ALTVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLK 334
AL+ T E W++D+GCSYH++ ++ + E + E G VR+GN +++G+GT+R+
Sbjct: 187 ALSSTDIHLEDEWIMDTGCSYHMTHKREWLEDFDEEAGCSVRMGNKTISRVKGVGTVRIA 246
Query: 335 MFDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGALVIAKGSKIHGL 394
+ L++VRYI ++ R +S+ F+ G E ++R++ G V+ +G + L
Sbjct: 247 NDNGLTVTLQNVRYISDMDRIFLSLGTFEKAGRKFESENDMLRVNAGEQVLLEGRRYDTL 306
Query: 395 YILEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGNEKLNKLDFCDN 454
YIL G + + DI LWH RL H+S++ + L K+G L +K++ LD C++
Sbjct: 307 YILHGKPATDESLAVAKANDDIV-LWHRRLCHMSQKNMSLLVKKGFLDKKKVSMLDTCED 365
Query: 455 CTLGKQHKVKFGVGVHKSSRPFE*VHSDLLG-PA*VKTYGGGSYFTSIIDDYSRRVWVYI 513
C GK K+ F H + E VH DL G P G YF S IDD++R+V VY
Sbjct: 366 CIYGKAKKIGFNFAQHDTKEKLEYVHYDLWGAPTMPMALGNCQYFISFIDDHTRKVCVYF 425
Query: 514 LKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYT 573
LK K +AFEKF W LVENQ G ++K LRTDNG EF F+ FC ++GI+RHR YT
Sbjct: 426 LKTKDEAFEKFVSWISLVENQSGNRVKTLRTDNGLEFCNRMFDGFCEERGIQRHRTCPYT 485
Score = 82.8 bits (203), Expect = 1e-15
Identities = 57/174 (32%), Positives = 91/174 (51%), Gaps = 15/174 (8%)
Query: 14 SNLFGLWKVKMRAILIQEKCVEALKREAQMSAHLTPAEK-TEMNDKAVSAIILCLGDKML 72
S++ GL V A K ++ K + + E E K S I+L + D++L
Sbjct: 10 SDMLGLSSVLREAETPMGKDRDSEKSDEEEKEECEKVEAFEEKKRKTRSTIVLSVSDRVL 69
Query: 73 REVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQLYFYRMMESKPIMEQLTEFNKIIDDL 132
R LYM+K+L ++ LKQ+LY ++M E+ + + EF I+ DL
Sbjct: 70 EASDR-------------LYMSKALPNQIYLKQKLYRFKMSENLSMEGNIDEFLHIVADL 116
Query: 133 ANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTI-TLEEVQATLITKEL 185
N++V + DED+ + LL +LP+SF+ KDT+ Y T+ TL+EV A + +KEL
Sbjct: 117 ENLNVLVSDEDQTILLLMSLPKSFDQLKDTLQYSSGKTVLTLDEVTAAIYSKEL 170
>At3g60170 putative protein
Length = 1339
Score = 212 bits (539), Expect = 1e-54
Identities = 153/550 (27%), Positives = 262/550 (46%), Gaps = 28/550 (5%)
Query: 40 EAQMSAHLTPAEKTEMND-KAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLA 98
EAQ SA E+ ++ D K + + + ++L + ++T+ ++W + Y +
Sbjct: 55 EAQRSA----VEEAKLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKV 110
Query: 99 HR---QCLKQQLYFYRMMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRS 155
R Q L+++ M E + I L +++ + +E +L +L
Sbjct: 111 KRAQLQALRKEFELLAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPK 170
Query: 156 FENFKDTMLYGKE-GTITLEEVQATLITKELTKFKDLKVDDSGEGLNVSRGRNQNRGKGK 214
F ++ + T++++E+ +L+ E ++ + + L V+ ++G+G+
Sbjct: 171 FNYVVCSIEESNDLSTLSIDELHGSLLVHEQRLNGHVQEE---QALKVTHEERPSQGRGR 227
Query: 215 GKNSKSKSRSKGDG----NKTKYKCFICHNPGHFKKDCPERKDNGGGNPSVQLASKDEGC 270
G S+ R +G G N+ +C+ CHN GHF+ +CPE + N +L ++E
Sbjct: 228 GVFRGSRGRGRGRGRSGTNRAIVECYKCHNLGHFQYECPEWEKNAN---YAELEEEEELL 284
Query: 271 ESAGALTVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGT 330
A + ++ W LDSGCS H++ K +F LE V+LGN+ + G G+
Sbjct: 285 LMA-YVEQNQANRDEVWFLDSGCSNHMTGSKEWFSELEEGFNRTVKLGNDTRMSVVGKGS 343
Query: 331 IRLKMFDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISH---GALVIAK 387
+++K+ + ++ +V Y+PELR NL+S+ G I G ++ H GA++
Sbjct: 344 VKVKV-NGVTQVIPEVYYVPELRNNLLSLGQLQERGLAILIRDGTCKVYHPSKGAIMETN 402
Query: 388 GSKIHGLYILEGSTIIAHASVPSVDTLDITK-LWHLRLGHVSERGLVELAKQGLLGNEKL 446
S ++L + + + +D LWH R GH+++ GL LA + ++ +
Sbjct: 403 MSGNRMFFLLASKPQKNSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPI 462
Query: 447 NKL--DFCDNCTLGKQHKVKFGVGVH-KSSRPFE*VHSDLLGPA*VKTYGGGSYFTSIID 503
K + C C GKQH+ KSS + VHSD+ GP ++ G Y S ID
Sbjct: 463 LKATKEICAICLTGKQHRESMSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSFID 522
Query: 504 DYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKG 563
D++R+ WVY L KS+AF FK + VE +IG L LRTD G EF +F EFCR G
Sbjct: 523 DFTRKTWVYFLHEKSEAFATFKIFKASVEKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHG 582
Query: 564 IKRHRIVAYT 573
I R A+T
Sbjct: 583 ISRQLTAAFT 592
Score = 71.6 bits (174), Expect = 3e-12
Identities = 30/95 (31%), Positives = 57/95 (59%), Gaps = 1/95 (1%)
Query: 1190 EAIWLKGMIGEMGISQ-GCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKE 1248
+ +WL+ ++ ++G + I+CD+ S I L+ H + H ++KHI +R H++RD++
Sbjct: 1239 QCVWLRKVLEKLGAEEKSATVINCDNSSTIQLSKHPVLHGKSKHIEVRFHYLRDLVNGDV 1298
Query: 1249 IKVEKVASEENPADIFTKSLPRSRFKHCLDLINFI 1283
+K+E +E+ ADIFTK L +F+ L+ +
Sbjct: 1299 VKLEYCPTEDQVADIFTKPLKLEQFEKLRALLGMV 1333
>At4g04280 putative transposon protein
Length = 1104
Score = 208 bits (530), Expect = 1e-53
Identities = 169/594 (28%), Positives = 266/594 (44%), Gaps = 121/594 (20%)
Query: 5 KWDIEKFTGSNLFGLWKVKMRAIL------------IQEKCVEALKREAQMSAHLTPAE- 51
K +I+ F G F WK+++ A L K V K+E + S + A
Sbjct: 2 KVEIKTFNGDRDFSFWKIRIEAQLGVLGLKNSLTDFKLTKTVPVAKKEEKESEYEDDASD 61
Query: 52 -----------KTEMNDKAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHR 100
K E +++A + II + D +L +V TA +W L+ L+M SL +R
Sbjct: 62 IKQATEEPDPIKFEQSEQAKNFIINHITDTVLLKVQHCKTAAEIWATLNKLFMETSLLNR 121
Query: 101 QCLKQQLYFYRMMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFK 160
+ +LY ++M+++ I + + EF +I+ D +D NL LP S+ K
Sbjct: 122 IYTQLKLYSFKMVDTLSIDQNVDEFLRILADC--LDQNL------------LPSSYIQLK 167
Query: 161 DTMLYGKEGTITLEEVQATLITKELTKFKDLKVDDSGEGLNVSRGRNQNRGKGKGKNSKS 220
T+ T + ++ + ++L++ ++ + S RGR Q R + K K+
Sbjct: 168 HTL-----NTDVVSSAKS--LERKLSETQESNKNVSMALYTTDRGRPQVRNQDKQGQGKN 220
Query: 221 KSRSKGDGNKTKYKCFICHNPGHFKKDCPERKDNGGGNPSVQLASKDEGCESAGALTVTS 280
+ RS +KT+ C+ C KK+ ++D ++ + E+ T+
Sbjct: 221 RGRSN---SKTRVTCWFC------KKEAHVKRD---------CFARKKKLENENRATM-- 260
Query: 281 WEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKMFDDRD 340
+ LG++ + +G GTI+L
Sbjct: 261 ----------------------------------ILLGDDHTVESRGCGTIKLNTHGGLI 286
Query: 341 FLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGALVIAKGSKIHGLYILEGS 400
+LK+VRY+P LRRNLIS LGY G +R G ++GLYIL+G
Sbjct: 287 RMLKNVRYVPNLRRNLISTGTLHSLGYKHEGGEGKLRFYKNGKTALCGYLMNGLYILDGH 346
Query: 401 TIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGNEKLNKLDFCDNCTLGKQ 460
T+ A + + + TKL L+ ++ LDFC++ +GK
Sbjct: 347 TV-ATETCNAESAKNSTKL--------------------LIEKKEFKDLDFCEHYVMGKS 385
Query: 461 HKVKFGVGVHKSSRPFE*VHSDLLG-PA*VKTYGGGSYFTSIIDDYSRRVWVYILKNKSD 519
K+ F VG H + VH+DL G P + G YF SIIDD SR+VW+ LK+K +
Sbjct: 386 KKLSFNVGKHVTEDILGYVHADLWGSPNVTPSISGKQYFLSIIDDKSRKVWLMFLKSKDE 445
Query: 520 AFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYT 573
F+KF EW +VEN +G K+K LRTDNG EF +FN++C K GI+RHR YT
Sbjct: 446 TFDKFCEWKEIVENHVGKKVKTLRTDNGLEFCNNRFNDYCAKTGIERHRTCTYT 499
Score = 40.8 bits (94), Expect = 0.005
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 1242 DMIETKEIKVEKVASEENPADIFTKSLPRSRFKHCLDLINFI 1283
D+IE E++V K+ + NPAD+ TK +P S+F+ L+ + +
Sbjct: 1062 DIIEAGEVEVHKIHTTRNPADMLTKGIPVSKFEAALEFLKLL 1103
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 201 bits (511), Expect = 2e-51
Identities = 152/559 (27%), Positives = 263/559 (46%), Gaps = 58/559 (10%)
Query: 50 AEKTEMNDKAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQLYF 109
AEKT + K + + + +L+ + ++ T+ +W + Y L++
Sbjct: 19 AEKTVKDHKVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRS 78
Query: 110 YRMMESKPIMEQLTEF----NKIIDDLANIDVNLEDE-----------DKALHLLCALPR 154
+ ++E K I E +T + +I +D+ N+ ++ D +K +++CA+
Sbjct: 79 FEVLEMK-IGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEE 137
Query: 155 SFENFKDTMLYGKEGTITLEEVQATL--ITKELTKFKDLKVDDSGEGLNVSRGRNQNRGK 212
S N K+ + G + ++ + E + + + + K + D G G RG + +RG+
Sbjct: 138 S-NNIKELTVDGLQSSLMVHEQNLSRHDVEERVLKAETQWRPDGGRG----RGGSPSRGR 192
Query: 213 GKGKNSKSKSRSKGDGNKTKYKCFICHNPGHFKKDCPERKDNGGGNPSVQLASKDEGCES 272
G+G + R +G N+ +CF CH GH+K +CP + +E
Sbjct: 193 GRGGY---QGRGRGYVNRDTVECFKCHKMGHYKAECPSWEKEAN------YVEMEEDLLL 243
Query: 273 AGALTVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGV--VRLGNNKACKIQGIGT 330
+ E ++ W LDSGCS H+ + +F LEL+ G VRLG+++ ++G G
Sbjct: 244 MAHVEQIGDEEKQIWFLDSGCSNHMCGTREWF--LELDSGFKQNVRLGDDRRMAVEGKGK 301
Query: 331 IRLKMFDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHGALVIAKGSK 390
+RL++ D R ++ DV ++P L+ NL S+ G IE V + H K
Sbjct: 302 LRLEV-DGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKT---EKRMV 357
Query: 391 IHGLYILEGSTIIAHASVPSVDTLDI---------TKLWHLRLGHVSERGLVELAKQGLL 441
+H ++ A S +T + +WH R GH++ +GL LA++ ++
Sbjct: 358 MHSTMTKNRMFVVFAAVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMV 417
Query: 442 GNEKLNKLDF------CDNCTLGKQHKVKFGV-GVHKSSRPFE*VHSDLLGPA*VKTYGG 494
+ L K D CD C GKQ + KS++ + VH+D+ GP + G
Sbjct: 418 --KGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSG 475
Query: 495 GSYFTSIIDDYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQ 554
Y + IDD+SR+ W Y+L KS+ F+ FKE+ VE + G KL LR+D G E+ +
Sbjct: 476 KRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSRE 535
Query: 555 FNEFCRKKGIKRHRIVAYT 573
F+E+C++ GIKR AYT
Sbjct: 536 FDEYCKEFGIKRQLTAAYT 554
Score = 67.8 bits (164), Expect = 4e-11
Identities = 29/86 (33%), Positives = 56/86 (64%), Gaps = 1/86 (1%)
Query: 1190 EAIWLKGMIGEMGISQ-GCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKE 1248
+A+WL+ ++ E+G Q G + CD+ S I L+ + + H R+KHI++R HF+R++++
Sbjct: 1165 QAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGT 1224
Query: 1249 IKVEKVASEENPADIFTKSLPRSRFK 1274
I+++ + + ADI TK++ R F+
Sbjct: 1225 IRLDYCTTTDQVADIMTKAVKREVFE 1250
>At1g58140 hypothetical protein
Length = 1320
Score = 193 bits (491), Expect = 5e-49
Identities = 158/617 (25%), Positives = 278/617 (44%), Gaps = 55/617 (8%)
Query: 6 WDIEKFTGSNLFGLWKVKMRAILIQEKCVEALKR---EAQMSAHLTPAEKTEMND----- 57
+ + T SN + W ++M+AIL E +++ E + L+ +K + D
Sbjct: 8 FQVPVLTKSN-YDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRD 66
Query: 58 -KAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHR---QCLKQQLYFYRMM 113
KA+ I L + +V T+A W KL Y + Q L+ + +M
Sbjct: 67 KKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMK 126
Query: 114 ESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKE-GTIT 172
E + + + + + ++L L+D +L +L FE+ + K+ +T
Sbjct: 127 EGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMT 186
Query: 173 LEEVQATLITKELTKFKDLKVDDSGEGLNVS----------RGRNQNRGKGKG------- 215
+E++ +L E K K + + + ++ RG Q RG+G+G
Sbjct: 187 IEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRG 246
Query: 216 ---------KNSKSKSRSKGDGN------KTKYKCFICHNPGHFKKDC--PERKDNGGGN 258
+ ++ SR +G G+ K+ KC+ C GH+ +C P K
Sbjct: 247 WRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKA 306
Query: 259 PSVQLASKDEGCESAGALTVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLG 318
V+ ++E + E W LDSG S H+ RK F L+ G V LG
Sbjct: 307 NYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALG 366
Query: 319 NNKACKIQGIGTIRLKMFDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRI 378
+ +++G G I +++ + + +V YIP ++ N++S+ GY R++ + I
Sbjct: 367 DESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSI 426
Query: 379 --SHGALVIAKGSKIHGLYILEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELA 436
L+ + +++L IA + + + LWHLR GH++ GL L+
Sbjct: 427 RDQESNLITKVPMSKNRMFVLNIRNDIAQCL--KMCYKEESWLWHLRFGHLNFGGLELLS 484
Query: 437 KQGLL-GNEKLNKLD-FCDNCTLGKQHKVKFGV-GVHKSSRPFE*VHSDLLGPA*VKTYG 493
++ ++ G +N + C+ C LGKQ K+ F ++ +P E +H+D+ GP K+ G
Sbjct: 485 RKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLG 544
Query: 494 GGSYFTSIIDDYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLE 553
+YF IDD+SR+ WVY LK KS+ FE FK++ VE + G +K +R+D G EF +
Sbjct: 545 KSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSK 604
Query: 554 QFNEFCRKKGIKRHRIV 570
+F ++C GI+R V
Sbjct: 605 EFLKYCEDNGIRRQLTV 621
Score = 74.7 bits (182), Expect = 3e-13
Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQG-CVKIHCDSQSAIHLANHQIYHERTKHINIRLHF 1239
Y+ + AIWL+ ++ E+ + Q KI D++SAI LA + ++H+R+KHI+ R H+
Sbjct: 1207 YVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHY 1266
Query: 1240 VRDMIETKEIKVEKVASEENPADIFTKSLPRSRF 1273
+R+ + K++++E V + + ADIFTK L R F
Sbjct: 1267 IRECVSKKDVQLEYVKTHDQVADIFTKPLKREDF 1300
>At3g61330 copia-type polyprotein
Length = 1352
Score = 193 bits (490), Expect = 6e-49
Identities = 161/619 (26%), Positives = 280/619 (45%), Gaps = 59/619 (9%)
Query: 6 WDIEKFTGSNLFGLWKVKMRAILIQEKCVEALKR---EAQMSAHLTPAEKTEMND----- 57
+ + T SN + W ++M+AIL E +++ E + L+ +K + D
Sbjct: 8 FQVPVLTKSN-YDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRD 66
Query: 58 -KAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHR---QCLKQQLYFYRMM 113
KA+ I L + +V T+A W KL Y + Q L+ + +M
Sbjct: 67 KKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMK 126
Query: 114 ESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKE-GTIT 172
E + + + + + ++L L+D +L +L FE+ + K+ +T
Sbjct: 127 EGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMT 186
Query: 173 LEEVQATLITKELTKFKDLKVDDSGEGLNVS------------RGRNQNRGKGKG----- 215
+E++ +L E K K K D + + LN+ RG Q RG+G+G
Sbjct: 187 IEQLLGSLQAYEEKKKK--KEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNG 244
Query: 216 -----------KNSKSKSRSKGDGN------KTKYKCFICHNPGHFKKDC--PERKDNGG 256
+ ++ SR +G G+ K+ KC+ C GH+ +C P K
Sbjct: 245 RGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEE 304
Query: 257 GNPSVQLASKDEGCESAGALTVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVR 316
V+ ++E + + W LDSG S H+ RK F L+ G V
Sbjct: 305 KAHYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVA 364
Query: 317 LGNNKACKIQGIGTIRLKMFDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVM 376
LG+ +++G G I +++ + + +V YIP ++ N++S+ GY R++ +
Sbjct: 365 LGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNL 424
Query: 377 RI--SHGALVIAKGSKIHGLYILEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVE 434
I L+ + +++L IA + + + LWHLR GH++ GL
Sbjct: 425 SIRDQESNLITKVPMSKNRMFVLNIRNDIAQCL--KMCYKEESWLWHLRFGHLNFGGLEL 482
Query: 435 LAKQGLL-GNEKLNKLD-FCDNCTLGKQHKVKFGV-GVHKSSRPFE*VHSDLLGPA*VKT 491
L+++ ++ G +N + C+ C LGKQ K+ F ++ +P E +H+D+ GP K+
Sbjct: 483 LSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKS 542
Query: 492 YGGGSYFTSIIDDYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFV 551
G +YF IDD+SR+ WVY LK KS+ FE FK++ VE + G +K +R+D G EF
Sbjct: 543 LGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFT 602
Query: 552 LEQFNEFCRKKGIKRHRIV 570
++F ++C GI+R V
Sbjct: 603 SKEFLKYCEDNGIRRQLTV 621
Score = 73.9 bits (180), Expect = 5e-13
Identities = 34/94 (36%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQG-CVKIHCDSQSAIHLANHQIYHERTKHINIRLHF 1239
Y+ + AIWL+ ++ E+ + Q KI D++SAI LA + ++H+R+KHI+ R H+
Sbjct: 1239 YVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHY 1298
Query: 1240 VRDMIETKEIKVEKVASEENPADIFTKSLPRSRF 1273
+R+ + K++++E V + + AD FTK L R F
Sbjct: 1299 IRECVSKKDVQLEYVKTHDQVADFFTKPLKRENF 1332
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 192 bits (487), Expect = 1e-48
Identities = 157/617 (25%), Positives = 278/617 (44%), Gaps = 55/617 (8%)
Query: 6 WDIEKFTGSNLFGLWKVKMRAILIQEKCVEALKR---EAQMSAHLTPAEKTEMND----- 57
+ + T SN + W ++M+AIL E +++ E + L+ +K + D
Sbjct: 8 FQVPVLTKSN-YDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRD 66
Query: 58 -KAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHR---QCLKQQLYFYRMM 113
KA+ I L + +V T+A W KL Y + Q L+ + +M
Sbjct: 67 KKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMK 126
Query: 114 ESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKE-GTIT 172
E + + + + + ++L L+D +L +L FE+ + K+ +T
Sbjct: 127 EGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMT 186
Query: 173 LEEVQATLITKELTKFKDLKVDDSGEGLNVS----------RGRNQNRGKGKG------- 215
+E++ +L E K K + + + ++ RG Q RG+G+G
Sbjct: 187 IEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRG 246
Query: 216 ---------KNSKSKSRSKGDGN------KTKYKCFICHNPGHFKKDC--PERKDNGGGN 258
+ ++ SR +G G+ K+ KC+ C GH+ +C P K
Sbjct: 247 WRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFKEKA 306
Query: 259 PSVQLASKDEGCESAGALTVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLG 318
V+ ++E + E W LDSG S H+ RK F L+ G V LG
Sbjct: 307 NYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALG 366
Query: 319 NNKACKIQGIGTIRLKMFDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRI 378
+ +++G G I +++ + + +V YIP ++ N++S+ GY R++ + I
Sbjct: 367 DESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSI 426
Query: 379 --SHGALVIAKGSKIHGLYILEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELA 436
L+ + +++L IA + + + LWHLR GH++ GL L+
Sbjct: 427 RDKESNLITKVPMSKNRMFVLNIRNDIAQCL--KMCYKEESWLWHLRFGHLNFGGLELLS 484
Query: 437 KQGLL-GNEKLNKLD-FCDNCTLGKQHKVKFGV-GVHKSSRPFE*VHSDLLGPA*VKTYG 493
++ ++ G +N + C+ C LG Q K+ F ++ +P E +H+D+ GP K+ G
Sbjct: 485 RKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLG 544
Query: 494 GGSYFTSIIDDYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLE 553
+YF IDD+SR+ WVY LK KS+ FE FK++ VE + G +K +R+D+G EF +
Sbjct: 545 KSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSK 604
Query: 554 QFNEFCRKKGIKRHRIV 570
+F ++C GI+R V
Sbjct: 605 EFLKYCEDNGIRRQLTV 621
Score = 74.3 bits (181), Expect = 4e-13
Identities = 34/84 (40%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 1191 AIWLKGMIGEMGISQG-CVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEI 1249
AIWL+ ++ E+ + Q KI D++SAI LA + ++H+R+KHI+ R H++R+ + K++
Sbjct: 1169 AIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDV 1228
Query: 1250 KVEKVASEENPADIFTKSLPRSRF 1273
++E V + + ADIFTK L R F
Sbjct: 1229 QLEYVKTHDQVADIFTKPLKREDF 1252
>At1g48710 hypothetical protein
Length = 1352
Score = 190 bits (483), Expect = 4e-48
Identities = 157/617 (25%), Positives = 277/617 (44%), Gaps = 55/617 (8%)
Query: 6 WDIEKFTGSNLFGLWKVKMRAILIQEKCVEALKR---EAQMSAHLTPAEKTEMND----- 57
+ + T SN + W ++M+AIL E +++ E + L+ +K + D
Sbjct: 8 FQVPVLTKSN-YDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRD 66
Query: 58 -KAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHR---QCLKQQLYFYRMM 113
KA+ I L + +V T+A W KL Y + Q L+ + +M
Sbjct: 67 KKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMK 126
Query: 114 ESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKE-GTIT 172
E + + + + + ++L L+D +L +L FE+ + K+ +T
Sbjct: 127 EGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMT 186
Query: 173 LEEVQATLITKELTKFKDLKVDDSGEGLNVS----------RGRNQNRGKGKG------- 215
+E++ +L E K K + + + ++ RG Q RG+G+G
Sbjct: 187 IEQLLGSLQAYEEKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRG 246
Query: 216 ---------KNSKSKSRSKGDGN------KTKYKCFICHNPGHFKKDC--PERKDNGGGN 258
+ ++ SR +G G+ K+ KC+ C GH+ +C P K
Sbjct: 247 WRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKA 306
Query: 259 PSVQLASKDEGCESAGALTVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLG 318
V+ ++E + E W LDSG S H+ RK F L+ G V LG
Sbjct: 307 NYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALG 366
Query: 319 NNKACKIQGIGTIRLKMFDDRDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRI 378
+ +++G G I +++ + + +V YIP ++ N++S+ GY R++ + I
Sbjct: 367 DESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSI 426
Query: 379 --SHGALVIAKGSKIHGLYILEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELA 436
L+ + +++L IA + + + LWHLR GH++ GL L+
Sbjct: 427 RDQESNLITKVPMSKNRMFVLNIRNDIAQCL--KMCYKEESWLWHLRFGHLNFGGLELLS 484
Query: 437 KQGLL-GNEKLNKLD-FCDNCTLGKQHKVKFGV-GVHKSSRPFE*VHSDLLGPA*VKTYG 493
++ ++ G +N + C+ C LGKQ K+ F ++ + E +H+D+ GP K+ G
Sbjct: 485 RKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLG 544
Query: 494 GGSYFTSIIDDYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLE 553
+YF IDD+SR+ WVY LK KS+ FE FK++ VE + G +K +R+D G EF +
Sbjct: 545 KSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSK 604
Query: 554 QFNEFCRKKGIKRHRIV 570
+F ++C GI+R V
Sbjct: 605 EFLKYCEDNGIRRQLTV 621
Score = 74.7 bits (182), Expect = 3e-13
Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQG-CVKIHCDSQSAIHLANHQIYHERTKHINIRLHF 1239
Y+ + AIWL+ ++ E+ + Q KI D++SAI LA + ++H+R+KHI+ R H+
Sbjct: 1239 YVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHY 1298
Query: 1240 VRDMIETKEIKVEKVASEENPADIFTKSLPRSRF 1273
+R+ + K++++E V + + ADIFTK L R F
Sbjct: 1299 IRECVSKKDVQLEYVKTHDQVADIFTKPLKREDF 1332
>At2g19840 copia-like retroelement pol polyprotein
Length = 1137
Score = 169 bits (429), Expect = 7e-42
Identities = 100/294 (34%), Positives = 166/294 (56%), Gaps = 32/294 (10%)
Query: 52 KTEMNDKAVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQLYFYR 111
+ + ++KA+ I + +GDK+LR + TA W LD LY+ KSL +R L+ ++Y YR
Sbjct: 37 RIDQDEKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLKVYNYR 96
Query: 112 MMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTI 171
M +SK + E + EF K+I DL N+ + + DE +A+ +L ALP S++ K+T+ YG+EG I
Sbjct: 97 MQDSKTLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREG-I 155
Query: 172 TLEEVQATLITKELTKFKDLKVDDSGEGLNVSRGRNQNRGKGKGKNSKSKSRSKG-DGNK 230
L++V + K K+L++ DS G +R G+G + KS+++G DG K
Sbjct: 156 KLDDVISA------AKSKELELRDSSGG---------SRPVGEGLYVRGKSQARGSDGPK 200
Query: 231 T---KYKCFICHNPGHFKKDC----PERKDNGGGNPSVQLASKDEGCESAGALT-----V 278
+ K C+IC GHFK+ C + K NG G ++ KD+ + G +
Sbjct: 201 STEGKKVCWICGKEGHFKRQCYKWLEKNKANGAGETAL---VKDDAQDLVGLVASEVNMS 257
Query: 279 TSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIR 332
+ ++ W++D+GCS+H++PRK Y + G VR+ NN +++GIG ++
Sbjct: 258 EGKDDQEEWIMDTGCSFHMTPRKEYLMDFVEAKSGKVRMANNSFSEVKGIGKVK 311
Score = 118 bits (295), Expect = 2e-26
Identities = 53/100 (53%), Positives = 74/100 (74%)
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFV 1240
Y+ + EAIWLKG + E+G Q V IHCDSQSAI LA + +YHERTKHI+++ HF+
Sbjct: 1033 YMALTDGAKEAIWLKGHVSELGFVQKTVNIHCDSQSAIALAKNAVYHERTKHIDVKYHFI 1092
Query: 1241 RDMIETKEIKVEKVASEENPADIFTKSLPRSRFKHCLDLI 1280
RD++ E++V K+ +E+NPADIFTK LP S+F+ L+L+
Sbjct: 1093 RDLVNNGEVQVLKIDTEDNPADIFTKVLPVSKFQDALELL 1132
Score = 86.3 bits (212), Expect = 1e-16
Identities = 40/71 (56%), Positives = 49/71 (68%)
Query: 503 DDYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKK 562
+D+SR+VWVY LK K +AF F EW +VE Q KLK LRTDNG EF +F+E C+K+
Sbjct: 319 NDWSRKVWVYFLKTKDEAFASFTEWKKMVETQSERKLKHLRTDNGLEFCNHKFDEVCKKE 378
Query: 563 GIKRHRIVAYT 573
GI RHR YT
Sbjct: 379 GIVRHRTCTYT 389
>At2g10610 pseudogene
Length = 531
Score = 166 bits (421), Expect = 6e-41
Identities = 99/300 (33%), Positives = 158/300 (52%), Gaps = 7/300 (2%)
Query: 279 TSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKMFDD 338
T+ + E W LD+G S H++ + YF+ ++ G +R G++ I+G GTI +
Sbjct: 164 TNVDGENVWYLDNGASNHMTGDRRYFDKMDHSITGKIRFGDDSRIDIKGKGTIAFIDLNG 223
Query: 339 RDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERG--VMRISHGALVIAKGSKIHGLYI 396
+ ++ DV +IPEL+ N+IS+ G +++ G M G L++ + LY
Sbjct: 224 KPRVMLDVYFIPELKSNIISLGQATESGCEIKLKDGYLTMHDQEGKLLVKAERSRNSLYK 283
Query: 397 LEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLLGNEK--LNKLDFCDN 454
++ + + + + ++ LWH R+GHVS L + + L+ + + + C +
Sbjct: 284 VKMG--LRKEACLYLTSTSMSSLWHARMGHVSLITLKSMIDKELIQGAPSLVIESEVCGS 341
Query: 455 CTLGKQHKVKFGVG-VHKSSRPFE*VHSDLLGPA*VKTYGGGSYFTSIIDDYSRRVWVYI 513
C LGKQ + F V ++++ E +H DL GP KT G Y +IDDYSR +W +
Sbjct: 342 CLLGKQTRQSFPQATVFRATKKLELIHGDLCGPITPKTSVGNRYIFVLIDDYSRYMWTVL 401
Query: 514 LKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYT 573
LK K DAF KFK + LVE + G K++ TD G EFV +FN FC + GI+RH YT
Sbjct: 402 LKEKGDAFFKFKNFKALVEKESGEKIQTFITDRGGEFVSGEFNSFCERTGIRRHLTAPYT 461
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.343 0.153 0.518
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,413,404
Number of Sequences: 26719
Number of extensions: 1162571
Number of successful extensions: 6212
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 5460
Number of HSP's gapped (non-prelim): 412
length of query: 1283
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1172
effective length of database: 8,352,787
effective search space: 9789466364
effective search space used: 9789466364
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 66 (30.0 bits)
Medicago: description of AC135504.5