BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135504.3 + phase: 0
(166 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g10780 pseudogene 149 7e-37
At4g16910 retrotransposon like protein 145 7e-36
At3g31970 hypothetical protein 144 2e-35
At2g14650 putative retroelement pol polyprotein 141 1e-34
At4g03840 putative transposon protein 140 2e-34
At2g04670 putative retroelement pol polyprotein 138 1e-33
At4g10580 putative reverse-transcriptase -like protein 136 6e-33
At2g07660 putative retroelement pol polyprotein 129 7e-31
At3g29490 hypothetical protein 124 2e-29
At2g06470 putative retroelement pol polyprotein 118 2e-27
At1g36120 putative reverse transcriptase gb|AAD22339.1 97 4e-21
At3g11970 hypothetical protein 95 2e-20
At1g36590 hypothetical protein 95 2e-20
At4g07830 putative reverse transcriptase 92 2e-19
At2g14640 putative retroelement pol polyprotein 77 4e-15
At3g31480 hypothetical protein 74 5e-14
At2g05610 putative retroelement pol polyprotein 71 2e-13
At1g35370 hypothetical protein 52 1e-07
At2g06190 putative Ty3-gypsy-like retroelement pol polyprotein 51 3e-07
At4g08100 putative polyprotein 42 2e-04
>At2g10780 pseudogene
Length = 1611
Score = 149 bits (376), Expect = 7e-37
Identities = 74/164 (45%), Positives = 107/164 (65%)
Query: 2 IREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQI 61
++ K+K + RQKSY +KRRK LEFQ GD V+L+ G R +KL+P+++GPY++
Sbjct: 1419 LKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 1478
Query: 62 SERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRI 121
ERVG VAY++ LP L+ H+VFHVSQL+K ++D + +++N+TVE P+RI
Sbjct: 1479 IERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDIPPGLKENMTVEAWPVRI 1538
Query: 122 EDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
DR K RGK L+KV+W E TWE E+KM+ ++PE F
Sbjct: 1539 MDRMTKGTRGKARDLLKVLWNCRGREEYTWETENKMKANFPEWF 1582
>At4g16910 retrotransposon like protein
Length = 687
Score = 145 bits (367), Expect = 7e-36
Identities = 71/164 (43%), Positives = 106/164 (64%)
Query: 2 IREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQI 61
++ K+K + RQKSY +KRRK LEFQ GD V+L+ G R +KL P+++GPY++
Sbjct: 503 LKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLRPRYVGPYKV 562
Query: 62 SERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRI 121
ERVG VAY++ LP L H+VFHVSQL+K +++ + +++N+TVE P+RI
Sbjct: 563 IERVGAVAYKLDLPPKLDAFHNVFHVSQLRKCLSEQEESMEDVPPGLKENMTVEAWPVRI 622
Query: 122 EDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
D+ K RGK + L+K++W E TWE E+KM+ ++PE F
Sbjct: 623 MDQMKKGTRGKSMDLLKILWNCGGREEYTWETETKMKANFPEWF 666
>At3g31970 hypothetical protein
Length = 1329
Score = 144 bits (364), Expect = 2e-35
Identities = 73/167 (43%), Positives = 112/167 (66%), Gaps = 4/167 (2%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+++ MK + RQ+SY DKRR+ LEF+ GD V+L++ + G R++ KLTP+++GP++
Sbjct: 1159 VLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLTPRYMGPFR 1218
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I ERVG VAYR+ LP + H VFHVS L+K + V+ + ++ N+T+E P+R
Sbjct: 1219 IVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEVLAKILEDLQPNMTLEARPVR 1278
Query: 121 IEDREVKKLRGKDIPLVKVVWG--GVTGESLTWELESKMRDSYPESF 165
I +R +K+LR K IPL+KV+W GVT E TWE E++M+ S+ + F
Sbjct: 1279 ILERRIKELRRKKIPLIKVLWNCDGVTEE--TWEPEARMKASFKKWF 1323
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 141 bits (356), Expect = 1e-34
Identities = 70/167 (41%), Positives = 111/167 (65%), Gaps = 4/167 (2%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+++ MK + RQ+SY DKRR+ LEF+ GD V+L++ + G R++ KL+P+++GP++
Sbjct: 1161 VLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFR 1220
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I ERVG VAYR+ LP + H VFHVS L+K + V+ + ++ N+T+E P+R
Sbjct: 1221 IVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVR 1280
Query: 121 IEDREVKKLRGKDIPLVKVVW--GGVTGESLTWELESKMRDSYPESF 165
+ +R +K+LR K IPL+KV+W GVT E TWE E++M+ + + F
Sbjct: 1281 VLERRIKELRRKKIPLIKVLWDCDGVTKE--TWEPEARMKARFKKWF 1325
>At4g03840 putative transposon protein
Length = 973
Score = 140 bits (354), Expect = 2e-34
Identities = 70/164 (42%), Positives = 105/164 (63%)
Query: 2 IREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQI 61
++ K+K + RQKSY +KRRK LEFQ D V+L+ G R +KL+P+++GPY++
Sbjct: 781 LKIKLKEAQDRQKSYANKRRKELEFQVEDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 840
Query: 62 SERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRI 121
ERVG VAY++ LP L+ H+VFHVSQL+K +++ + +++N+TVE P++I
Sbjct: 841 IERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSNQEESVEDVPPGLKENMTVEAWPVQI 900
Query: 122 EDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
DR K RGK L+KV+W E TWE E+KM+ ++ E F
Sbjct: 901 MDRMTKGTRGKSRDLLKVLWNCGGREQYTWETENKMKANFSEWF 944
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 138 bits (348), Expect = 1e-33
Identities = 69/167 (41%), Positives = 111/167 (66%), Gaps = 4/167 (2%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+++ MK + +RQ+SY DKRR+ LEF+ GD V+L++ + G R++ KL+P+++GP++
Sbjct: 1241 VLKLNMKEAQARQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPFR 1300
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I ERVG VAYR+ LP + H VFHV L+K + V+ + ++ N+T+E P+R
Sbjct: 1301 IVERVGPVAYRLELPDVMRAFHKVFHVLMLRKCLHKDDEVLVKIPEDLQPNMTLEARPVR 1360
Query: 121 IEDREVKKLRGKDIPLVKVVW--GGVTGESLTWELESKMRDSYPESF 165
+ +R +K+LR K IPL+KV+W GVT E TWE E++M+ + + F
Sbjct: 1361 VLERRIKELRRKKIPLIKVLWDCDGVTEE--TWEPEARMKARFKKWF 1405
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 136 bits (342), Expect = 6e-33
Identities = 68/162 (41%), Positives = 106/162 (64%), Gaps = 4/162 (2%)
Query: 6 MKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQISERV 65
MK + RQ+SY DKRR+ LEF+ GD V+L++ + G R++ KL+P+++GP++I ERV
Sbjct: 1075 MKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFKIVERV 1134
Query: 66 GTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRIEDRE 125
VAYR+ LP + H VFHVS L+K + + + ++ N+T+E P+R+ +R
Sbjct: 1135 EPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEALAKIPEDLQPNMTLEARPVRVLERR 1194
Query: 126 VKKLRGKDIPLVKVVW--GGVTGESLTWELESKMRDSYPESF 165
+K+LR K IPL+KV+W GVT E TWE E++M+ + + F
Sbjct: 1195 IKELRQKKIPLIKVLWDCDGVTEE--TWEPEARMKARFKKWF 1234
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 129 bits (324), Expect = 7e-31
Identities = 64/139 (46%), Positives = 93/139 (66%)
Query: 2 IREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQI 61
++ K+K + RQKSY +KRRK LEFQ GD V+L+ G R +KL+P+++GPY++
Sbjct: 811 LKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 870
Query: 62 SERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRI 121
ERVG VAY++ LP L+ H+VFHVSQL+KY++D + +++N+TVE P+RI
Sbjct: 871 IERVGAVAYKLDLPPKLNVFHNVFHVSQLRKYLSDQEESVEDIPPGLKENMTVEAWPVRI 930
Query: 122 EDREVKKLRGKDIPLVKVV 140
DR K RGK L+KV+
Sbjct: 931 MDRMSKGTRGKSRDLLKVL 949
>At3g29490 hypothetical protein
Length = 438
Score = 124 bits (312), Expect = 2e-29
Identities = 64/167 (38%), Positives = 106/167 (63%), Gaps = 4/167 (2%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+++ MK + RQ SY DKRR+ LEF+ GD V+L++ + G R++ KL+ +++GP++
Sbjct: 171 VLKLNMKEAQDRQWSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSLRYMGPFR 230
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I ERVG VAY + LP + H VFHVS L+K + V+ + ++ N+T+E +R
Sbjct: 231 IVERVGPVAYMLELPDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARQVR 290
Query: 121 IEDREVKKLRGKDIPLVKVVW--GGVTGESLTWELESKMRDSYPESF 165
+ +R +K+L+ K I L+KV+W GVT E TW+ E++M+ + + F
Sbjct: 291 VLERRIKELQRKKISLIKVLWDCDGVTEE--TWQPEARMKARFKKWF 335
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 118 bits (295), Expect = 2e-27
Identities = 56/122 (45%), Positives = 83/122 (67%)
Query: 2 IREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQI 61
++ K+K +H RQKSY +KRRK LEFQ GD V+L+ G R +KL+P+++GPY++
Sbjct: 778 LKIKLKEAHDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 837
Query: 62 SERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRI 121
ERVG VAY++ LP L+ H+VFHVSQL+K ++D + +++N+TVE P+RI
Sbjct: 838 IERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDVPPGLKENMTVEAWPVRI 897
Query: 122 ED 123
D
Sbjct: 898 MD 899
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 97.1 bits (240), Expect = 4e-21
Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 33/167 (19%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+++ MK + RQ+SY DKRR+ LEF+ G +
Sbjct: 1094 VLKLNMKEAQDRQRSYADKRRRELEFEVGT-----------------------------E 1124
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
I ERVG VAYR+ LP + H+VFHVS L+K + V+ + ++ N+T+E P+R
Sbjct: 1125 IVERVGPVAYRLELPDVMRAFHNVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVR 1184
Query: 121 IEDREVKKLRGKDIPLVKVVW--GGVTGESLTWELESKMRDSYPESF 165
+ +R +K++R K IP++KV+W GVT E TWE E++++ + + F
Sbjct: 1185 VLERRIKEVRRKKIPMIKVLWDCDGVTEE--TWEPEARIKARFKKWF 1229
>At3g11970 hypothetical protein
Length = 1499
Score = 94.7 bits (234), Expect = 2e-20
Identities = 58/161 (36%), Positives = 95/161 (58%), Gaps = 10/161 (6%)
Query: 6 MKASHSRQKSYHDKRRKALEFQEGDHVFLRVTP---MTGVRRALKSRKLTPKFIGPYQIS 62
M+A H R K + D+ R EF+ GD+V++++ P + V RA ++KL+PK+ GPY+I
Sbjct: 1343 MRAQH-RMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRA--NQKLSPKYFGPYKII 1399
Query: 63 ERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRIE 122
+R G VAY++ LP++ S +H VFHVSQL+ V + S + V ++D E P ++
Sbjct: 1400 DRCGEVAYKLALPSY-SQVHPVFHVSQLKVLVGNVSTTVHLPSV-MQD--VFEKVPEKVV 1455
Query: 123 DREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPE 163
+R++ +GK + V V W E TWE ++ ++PE
Sbjct: 1456 ERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPE 1496
>At1g36590 hypothetical protein
Length = 1499
Score = 94.7 bits (234), Expect = 2e-20
Identities = 58/161 (36%), Positives = 95/161 (58%), Gaps = 10/161 (6%)
Query: 6 MKASHSRQKSYHDKRRKALEFQEGDHVFLRVTP---MTGVRRALKSRKLTPKFIGPYQIS 62
M+A H R K + D+ R EF+ GD+V++++ P + V RA ++KL+PK+ GPY+I
Sbjct: 1343 MRAQH-RMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRA--NQKLSPKYFGPYKII 1399
Query: 63 ERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRIE 122
+R G VAY++ LP++ S +H VFHVSQL+ V + S + V ++D E P ++
Sbjct: 1400 DRCGEVAYKLALPSY-SQVHPVFHVSQLKVLVGNVSTTVHLPSV-MQD--VFEKVPEKVV 1455
Query: 123 DREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPE 163
+R++ +GK + V V W E TWE ++ ++PE
Sbjct: 1456 ERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPE 1496
>At4g07830 putative reverse transcriptase
Length = 611
Score = 91.7 bits (226), Expect = 2e-19
Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 24/167 (14%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+++ MK + +RQ+SY DKRRK LEF+ GD V + V R+
Sbjct: 425 VLKLNMKEAQNRQRSYADKRRKELEFEVGDSV----SQDGHVARS--------------- 465
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLR 120
+RVG VA+R+ L + H VFHVS L+K + V+ + ++ N+T+E P+R
Sbjct: 466 -EQRVGPVAFRLELSDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVR 524
Query: 121 IEDREVKKLRGKDIPLVKVV--WGGVTGESLTWELESKMRDSYPESF 165
+ +R +K+LR K IPL+KV+ GVT E TWE E++++ + + F
Sbjct: 525 VLERRIKELRRKKIPLIKVLRNCDGVTEE--TWEPEARLKARFKKWF 569
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 77.0 bits (188), Expect = 4e-15
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 7/165 (4%)
Query: 2 IREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPM---TGVRRALKSRKLTPKFIGP 58
+++ + +++ K D R + + FQ GD V LR+ P T RR+ S+KL+ +F GP
Sbjct: 774 LKQHLVTANNCMKQQADSRLRDVSFQVGDWVLLRIQPYRQKTLFRRS--SQKLSHRFYGP 831
Query: 59 YQISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSP 118
+Q++ + G VAYR+ LP + +H VFHVS L+ +V D + + +R+N ++ P
Sbjct: 832 FQVASKHGEVAYRLTLPEG-TRIHPVFHVSLLKPWVGDGEPDMGQLP-PLRNNGELKLQP 889
Query: 119 LRIEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPE 163
+ + + K + + V W G+ E TWE ++ S+PE
Sbjct: 890 TAVLEVRWRSQDKKRVADLLVQWEGLHIEDATWEEYDQLAASFPE 934
>At3g31480 hypothetical protein
Length = 338
Score = 73.6 bits (179), Expect = 5e-14
Identities = 32/71 (45%), Positives = 51/71 (71%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+++ MK +H RQ+SY D RR+ +EF+ GD V+L++ + +R + KL+PK++GP++
Sbjct: 138 VLKLNMKEAHDRQRSYADMRRREVEFEVGDRVYLKMDMLQSPKRFILETKLSPKYMGPFR 197
Query: 61 ISERVGTVAYR 71
I ERVG VAYR
Sbjct: 198 IVERVGPVAYR 208
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 71.2 bits (173), Expect = 2e-13
Identities = 42/111 (37%), Positives = 68/111 (60%), Gaps = 6/111 (5%)
Query: 6 MKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKS-RKLTPKFIGPYQISER 64
M+A H R K D+ EF+ GD+VF+++ P ++S +KL+PK+ GPY++ +R
Sbjct: 671 MRAQH-RMKQLADQHITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDR 729
Query: 65 VGTVAYRVGLPTHLSNLHDVFHVSQLQKY---VADPSHVIPREDVQVRDNL 112
G VAY++ LP + S +H VFHVSQL+ V +H++ + +R+NL
Sbjct: 730 CGEVAYKLQLPAN-SQVHPVFHVSQLRVLVGTVTTSTHLLRCYLMSLRENL 779
>At1g35370 hypothetical protein
Length = 1447
Score = 52.0 bits (123), Expect = 1e-07
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 33/150 (22%)
Query: 6 MKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALK-SRKLTPKFIGPYQISER 64
M+A H R K + D+ R F GD V++++ P L+ ++KL+PK+ GPY+I E+
Sbjct: 1314 MRAQH-RMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEK 1372
Query: 65 VGTVAY-RVGLPTHL-SNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVETSPLRIE 122
G V V T L S L D+F E +P I
Sbjct: 1373 CGEVMVGNVTTSTQLPSVLPDIF-----------------------------EKAPEYIL 1403
Query: 123 DREVKKLRGKDIPLVKVVWGGVTGESLTWE 152
+R++ K +G+ +V V W G E TW+
Sbjct: 1404 ERKLVKRQGRAATMVLVKWIGEPVEEATWK 1433
>At2g06190 putative Ty3-gypsy-like retroelement pol polyprotein
Length = 280
Score = 50.8 bits (120), Expect = 3e-07
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 1 MIREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQ 60
+++ K++A+ + K DKRR+ F+EGD V V G K+ P+ GP++
Sbjct: 164 VVKAKLEATGKKNKVAADKRRRFKVFKEGDDVM--VLLRKGRFAVGTYNKVKPRKYGPFK 221
Query: 61 ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLTVET 116
+ ++ AY V LP + N+ + F+V+ + +Y AD + P E+++ + ET
Sbjct: 222 VLRKINDNAYVVALPKSM-NISNTFNVADIHEYHAD-GVLYPEENLRTSSSEVEET 275
>At4g08100 putative polyprotein
Length = 1054
Score = 41.6 bits (96), Expect = 2e-04
Identities = 30/118 (25%), Positives = 58/118 (48%), Gaps = 6/118 (5%)
Query: 6 MKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQISERV 65
++A + K Y +K RK + F EGD V++ + ++S KL P+ GP+++ +R+
Sbjct: 899 LEARTKQYKKYANKGRKEVIFNEGDQVWVHLRKKRFPE--VRSSKLMPRIDGPFKVLKRI 956
Query: 66 GTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVI-PREDVQ---VRDNLTVETSPL 119
AY++ L + F V + + + + + + P+ED + + L V PL
Sbjct: 957 NNNAYKLDLQDTSDLRTNPFQVGEDDENMTNATKPLEPQEDEEQLVPEEALIVPAGPL 1014
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,641,693
Number of Sequences: 26719
Number of extensions: 140629
Number of successful extensions: 361
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 36
length of query: 166
length of database: 11,318,596
effective HSP length: 92
effective length of query: 74
effective length of database: 8,860,448
effective search space: 655673152
effective search space used: 655673152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC135504.3