BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135464.8 - phase: 0 
         (559 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g41570 putative Ta11-like non-LTR retroelement protein              71  1e-12
At2g01050 hypothetical protein                                         70  2e-12
At4g15600 hypothetical protein                                         65  1e-10
At3g32110 non-LTR reverse transcriptase, putative                      62  8e-10
At4g07521 putative protein                                             61  2e-09
At2g07740 putative Ta11-like non-LTR retroelement protein              61  2e-09
At2g07670 putative non-LTR retrolelement reverse transcriptase         61  2e-09
At2g16690 putative Ta11-like non-LTR retroelement protein              60  3e-09
At4g03920 putative protein                                             60  4e-09
At2g15550 putative Ta11-like non-LTR retroelement protein              59  5e-09
At2g15520 putative Ta11-like non-LTR retroelement protein              58  1e-08
At2g31520 putative non-LTR retroelement reverse transcriptase          58  2e-08
At2g01840 putative non-LTR retroelement reverse transcriptase          58  2e-08
At2g07760 putative Ta11-like non-LTR retroelement protein              57  3e-08
At2g01550 putative non-LTR retroelement reverse transcriptase          57  3e-08
At2g18820 putative non-LTR retroelement reverse transcriptase          56  6e-08
At2g25550 putative non-LTR retroelement reverse transcriptase          55  8e-08
At2g05290 putative Ta11-like non-LTR retroelement protein              55  1e-07
At4g01490 putative transposon protein                                  54  2e-07
At2g45230 putative non-LTR retroelement reverse transcriptase          53  5e-07

>At2g41570 putative Ta11-like non-LTR retroelement protein
          Length = 418

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 60/243 (24%), Positives = 103/243 (41%), Gaps = 26/243 (10%)

Query: 10  FEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQ-----VWVRLHEL 64
           F+F+F S +D+  +       LK G+    EW        ++ T        VW+RL  +
Sbjct: 77  FQFFFKSEDDLLEI-------LKTGVWTQDEWCVVMERWIEKSTEEYLMFLPVWMRLRNI 129

Query: 65  PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHI--FNEVMIERTG 122
           P  Y+   T+K+IAS +G  L ++   +      Y RV V +D+   +  F E+ +  TG
Sbjct: 130 PVNYYTQDTIKKIASCVGKVLKVELDLEKSQAQDYIRVQVIIDVRNPLRNFKEIQLP-TG 188

Query: 123 FSFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTIISQK--------- 173
              S+   YER+   C  C  + H    C    P K  ++D  +++   +K         
Sbjct: 189 EIVSVTFDYERIRKRCFLCQRLTHEKGDCDSGRPGKSSVMDGFQRSFFEKKEDKEKSDLR 248

Query: 174 -PQPPKWLPRDNLDGIGSSKAFEAPVGNNNAESIPTT-HKVATKLPVQTDLTESADAQHS 231
            PQ    LP  +LD I  + A        N+  + +T  +V +   V+    E+ ++Q  
Sbjct: 249 FPQSNHPLPSSDLDRIEGNSALSTKTNLLNSRIMSSTPSEVQSTGLVEKIRKEAKESQEH 308

Query: 232 DSA 234
           + A
Sbjct: 309 EKA 311


>At2g01050 hypothetical protein
          Length = 515

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 44/148 (29%), Positives = 67/148 (44%), Gaps = 4/148 (2%)

Query: 4   ELGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHE 63
           +L   +F   F   E+  +  + G   +    L + +WS  F           VWVRL  
Sbjct: 113 DLPRQFFMIRFELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSN 172

Query: 64  LPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGF 123
           +P  Y+    L EIA  +G PL +D  T N   G +ARV ++++L+K +   V+I    +
Sbjct: 173 IPYNYYHRCLLMEIARGLGRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRY 232

Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSC 151
                + YE L   C+ CG  GH   SC
Sbjct: 233 F----VAYEGLSKICSSCGIYGHLVHSC 256


>At4g15600 hypothetical protein
          Length = 655

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 4/148 (2%)

Query: 4   ELGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHE 63
           +L   +F   F   ED     + G   +   +L +  WS +F           VWVR+  
Sbjct: 128 DLPRQFFMVRFEVEEDYMMALTGGPWRVLGSILMVQAWSPEFNPLRDVIETTPVWVRVAN 187

Query: 64  LPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGF 123
           LP  ++ +  L  IA+ +G P+ +D  T  +  G +ARV V+++L   +   +++    +
Sbjct: 188 LPVTFYHNEILLGIAAGLGKPIKVDLTTLRKERGRFARVCVEVNLKNPLKGTLVVNGERY 247

Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSC 151
                ++YE L   C+ CG  GH  ++C
Sbjct: 248 F----VSYEGLQTICSLCGIYGHTVNNC 271



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 23/80 (28%), Positives = 38/80 (46%), Gaps = 1/80 (1%)

Query: 436 LWALWSKDL-SITVLFVSDQCIALQISCHQSIVYIAAVYASTYYLKRRQLWADLTHIQEH 494
           LW LW   + ++ ++  + Q I  +I      V++  VYA+    +R  LW +L      
Sbjct: 575 LWLLWRSSVGNVEIVSSTSQFIHAKILTGLESVHLVVVYAAPSVSRRSGLWNELREAVSG 634

Query: 495 FVGPWLFVGDFNAVLGAHEK 514
             GP +  GDFN +L   E+
Sbjct: 635 LDGPLIIGGDFNTILRVDER 654


>At3g32110 non-LTR reverse transcriptase, putative
          Length = 1911

 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 35/148 (23%), Positives = 64/148 (42%), Gaps = 4/148 (2%)

Query: 4   ELGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHE 63
           +L   +F   F   E+  +  + G        L +  WS +F           +WVR+ +
Sbjct: 130 DLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPIWVRIAD 189

Query: 64  LPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGF 123
           +P  ++    L  +A  +G PL +D    +   G +ARV V++DL + +   +++    +
Sbjct: 190 MPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALLVNGDRY 249

Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSC 151
                + YE L   C+ CG  GH   +C
Sbjct: 250 ----YVAYEGLTNICSKCGIYGHLVHNC 273



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 29/104 (27%), Positives = 46/104 (43%), Gaps = 1/104 (0%)

Query: 436 LWALWSKDLS-ITVLFVSDQCIALQISCHQSIVYIAAVYASTYYLKRRQLWADLTHIQEH 494
           LW LW   +  ++V+  +DQ I  +    +  V +  VYA+    +R  LW  L  +   
Sbjct: 633 LWLLWRTGIGEVSVVDSTDQFIHAKDVNGKDNVNLVVVYAAPTASRRSGLWDRLGDVIRS 692

Query: 495 FVGPWLFVGDFNAVLGAHEKCGRRPPPPLSCLDFLNWSNANYLL 538
             GP +  GDFN ++   E+ G         L F  W N + L+
Sbjct: 693 MDGPVVIGGDFNTIVRLDERSGGNGRLSSDSLAFGEWINDHSLI 736


>At4g07521 putative protein
          Length = 223

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 44/185 (23%), Positives = 79/185 (41%), Gaps = 8/185 (4%)

Query: 4   ELGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHE 63
           +L   +F   F   E+  +  +     +    L +  W  +F           VW+RL  
Sbjct: 2   DLPRQFFMIRFELQEEYLAALTGDPWRVFGSNLTVQAWLPEFDPLRDVIATTPVWIRLTN 61

Query: 64  LPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGF 123
           +P  ++    L  IA  +G P  +D+ T N     +ARV V+M+L+K +   +M+    +
Sbjct: 62  VPVNFYHPSILMSIAGGLGKPFKVDTMTLNHERARFARVCVEMNLAKPLKGTIMVNGDRY 121

Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTIISQKPQP-PKWLPR 182
                + YE L   C+ CG  GH   +C     V +    +  +T +S+ P+   + +P+
Sbjct: 122 ----YVAYEGLTNICSTCGLYGHLVHTC---PRVVQEQSKEGPRTDVSEGPRDFSQGVPK 174

Query: 183 DNLDG 187
            N  G
Sbjct: 175 KNQSG 179


>At2g07740 putative Ta11-like non-LTR retroelement protein
          Length = 409

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 38/147 (25%), Positives = 61/147 (40%), Gaps = 4/147 (2%)

Query: 5   LGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHEL 64
           L   +F   F   ED  +        +   +L +  WS DF           VWVR+  L
Sbjct: 66  LPRSFFMVKFDLEEDYLAAAIGDPWRVLGSILMIRAWSPDFNPIRDEIVTTLVWVRISNL 125

Query: 65  PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGFS 124
           P  Y+ +  L  I   +G P+ ++     +   H+ARV V ++L + +   V++    + 
Sbjct: 126 PVNYYHETILTAIVEGLGKPIKVNLTILRKERAHFARVCVKVNLKQPLKGTVVVNGECYY 185

Query: 125 FSIEITYERLPAFCTHCGNIGHHNSSC 151
            S    YE L   C+ CG  GH   +C
Sbjct: 186 AS----YEGLNVICSLCGVFGHLAGAC 208


>At2g07670 putative non-LTR retrolelement reverse transcriptase
          Length = 913

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 4/143 (2%)

Query: 9   YFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHELPQEY 68
           +F   F   ++  S  + G        L +  WS +F       T   +WVRL  +P   
Sbjct: 93  FFMIRFEREDEYLSALTGGPWRAFGSYLLVQAWSPEFDPLRDEITTTPIWVRLMNIPLSL 152

Query: 69  WMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIERTGFSFSIE 128
           +    L  IA ++G P+ +D  T +     +AR+ +++DL+K +   +++    +     
Sbjct: 153 YHTSILMGIAGSLGKPVKVDMTTLHVERARFARMCIEVDLAKPLKGTLLLNGERYF---- 208

Query: 129 ITYERLPAFCTHCGNIGHHNSSC 151
           ++YE L   C+ CG  GH   +C
Sbjct: 209 VSYEGLANICSRCGMYGHLIHTC 231


>At2g16690 putative Ta11-like non-LTR retroelement protein
          Length = 240

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 38/167 (22%), Positives = 73/167 (42%), Gaps = 21/167 (12%)

Query: 10  FEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQ-----VWVRLHEL 64
           F+F++ S +D+  +       LK G+    EW        ++          +W+RL  +
Sbjct: 77  FQFFYKSNDDLLEI-------LKTGVWTQDEWCVIMDRWVEKPPEEYLMILPIWIRLRNI 129

Query: 65  PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIE-RTGF 123
           P  Y+ + T+K+IA  +G  + ++   +      Y RV V++D+   + N   ++  +G 
Sbjct: 130 PVNYYTEETIKKIAGCVGQVVKVELDLEKSQAQDYVRVQVNLDVRNPLRNSKSVQVPSGE 189

Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTII 170
             S+   YER+   C  C  + H  + C        P ++KK +  I
Sbjct: 190 VVSVTFDYERIRKRCFFCQRLTHDKADC--------PYVNKKIRIFI 228


>At4g03920 putative protein
          Length = 463

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 40  EWSKDFTARTQRQTHAQVWVRLHELPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHY 99
           +W    T      T A +W+ L  +P +++ D  L+ IAS +G P  +  +T N+     
Sbjct: 189 KWEPGLTPVKPELTTAPIWLELRHVPFQFFNDNGLEHIASLVGEPKFLHPSTANKTNLEV 248

Query: 100 ARVLVDMDLSKHIFNEVMIE-RTGFSFSIEITYERLPAFCTHCGNIGHHNSSCR 152
           ARV   +D  K +   V +   +G    IE++   +P  C HC  +GH    C+
Sbjct: 249 ARVFTIIDPRKPLPEAVNVHFASGDIRRIEVSSPWMPPVCAHCKEVGHSLRKCK 302


>At2g15550 putative Ta11-like non-LTR retroelement protein
          Length = 589

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 39/168 (23%), Positives = 74/168 (43%), Gaps = 19/168 (11%)

Query: 5   LGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHEL 64
           LG+  F+F+F S  D++ V +K   +       L  W       T        WVR   +
Sbjct: 85  LGDARFQFFFESEVDLQKVLNKRPCHFNKWSFALERWEPH--VGTSFPNIMTFWVRTEGI 142

Query: 65  PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHI-FNEVMIERTGF 123
           P E+W +  L+   +++G    +D +          R+L+ +     + FN+     +G 
Sbjct: 143 PAEFWDEEVLRNFGNSLGLVRRVDPSK--------GRILISVTADVPLRFNKNAQLPSGT 194

Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTIIS 171
              ++++YE+L  +C++C  I H    C        PL+D ++K ++S
Sbjct: 195 VVKVKLSYEKLFRWCSYCRRICHELEQC--------PLLDAEQKAVLS 234


>At2g15520 putative Ta11-like non-LTR retroelement protein
          Length = 483

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 4/186 (2%)

Query: 5   LGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHEL 64
           L N  F+F F S  D+  V +KG        + +  W ++      R  +  +WV++  +
Sbjct: 69  LNNERFQFIFDSEHDLEEVLAKGVHTFNDWSIVVDRWYENPPDDYLR--YMLLWVQIWNI 126

Query: 65  PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIE-RTGF 123
           P  Y   + + ++   IG    +    + +    + RV V  D+S+ +    ++  R G 
Sbjct: 127 PVNYNTAKAITKLGDLIGEVKEVVFNPELKQIREFVRVKVLFDVSRPLRRSKVVNFRNGG 186

Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTIISQK-PQPPKWLPR 182
           S ++   YER+   C  C  + H    C  L   ++ L   ++K II  K   PP     
Sbjct: 187 SATVNFHYERIQKRCYECQRLTHEKDVCPILVKARQDLATARRKGIIIPKATTPPILKES 246

Query: 183 DNLDGI 188
           D L G+
Sbjct: 247 DPLFGV 252


>At2g31520 putative non-LTR retroelement reverse transcriptase
          Length = 1524

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 65/291 (22%), Positives = 115/291 (39%), Gaps = 27/291 (9%)

Query: 236 VSAAIHHSDDEDNLSAAAHHSD----DVSPQNVTKDPLDFEFIPVMPDDINKATLPSTSI 291
           +S  +  SDD+D      HH D    D+S  +  +       IP +   ++K        
Sbjct: 30  LSNPVETSDDDDADDDDDHHDDNKEHDISDTDTLQTVDPATLIPGLQSSLSKGNQRQ--- 86

Query: 292 HVLEETADTAEVP--IEDTTAAAEPLFTDVMALEAQTQTNRTDVELIAARVASLQHHEIP 349
             +++ +D   VP  IEDT    E L      L A+    +TD  +    +       + 
Sbjct: 87  --VQKLSDGYSVPCVIEDTDLTVERL----RYLHAKLAGVKTDAPVEKDLL-------LE 133

Query: 350 ISKNVQHDLDLW----ARIREYDQRMAEEGFTQVLSKKQQKDAKKASLRKGFVQHPRKGY 405
            S N Q++         R+ E  Q++       VLS+  +K  K  S     + H     
Sbjct: 134 SSDNAQNEFVFMKRKRVRLEEMYQQVEAADEMGVLSQLCKKGRKTESAGSCSI-HDGLET 192

Query: 406 SSSLILMNILFWNIRVTKYFLNVRDNLQPNLWALWSKDLSITVLFVSDQCIALQISCHQS 465
            +    +  L +++          +     L  +W  ++S++++   ++ I   ++ +  
Sbjct: 193 LNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLIDSHVTFNNK 252

Query: 466 IVYIAAVYASTYYLKRRQLWADLTHIQEHFVGPWLFVGDFNAVLGAHEKCG 516
             Y++ VY      +R QLW  L HI ++    WL VGDFN +L   EK G
Sbjct: 253 SFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIG 303


>At2g01840 putative non-LTR retroelement reverse transcriptase
          Length = 1715

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 32/102 (31%), Positives = 45/102 (43%)

Query: 432 LQPNLWALWSKDLSITVLFVSDQCIALQISCHQSIVYIAAVYASTYYLKRRQLWADLTHI 491
           L   L   W K LSI V+    + + L +       Y++ +Y      +R  LW  L  +
Sbjct: 426 LSGGLVVYWKKHLSIQVISHDVRLVDLYVEYKNFNFYLSCIYGHPIPSERHHLWEKLQRV 485

Query: 492 QEHFVGPWLFVGDFNAVLGAHEKCGRRPPPPLSCLDFLNWSN 533
             H  GPW+  GDFN +L  +EK G R     S  +F N  N
Sbjct: 486 SAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMIN 527



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 33/146 (22%), Positives = 60/146 (40%), Gaps = 3/146 (2%)

Query: 7   NGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHELPQ 66
           N  F+F F S E + +V  +G  +    +L +  W+ D             W+++ E+P 
Sbjct: 75  NRRFQFIFPSEESLDTVLRRGPWSFADRMLVVERWTPDMDPLVLN--FIPFWIQVREIPL 132

Query: 67  EYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHI-FNEVMIERTGFSF 125
           ++     +  IA ++G    +D          + R+ +  D++  + F        G + 
Sbjct: 133 QFLNLEVIDNIAGSLGERKAVDFDPFTTTRVEFVRIQIKWDVNHPLRFQRNYQFSLGVNT 192

Query: 126 SIEITYERLPAFCTHCGNIGHHNSSC 151
            +   YERL  FC  CG + H   SC
Sbjct: 193 VLSFYYERLRGFCDVCGRMTHDAGSC 218


>At2g07760 putative Ta11-like non-LTR retroelement protein
          Length = 530

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 27/250 (10%)

Query: 26  KGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHELPQEYWMDRTLKEIASAIGTPL 85
           +G  ++   L+ +  WS   T      +   VWV L  +P   +    +  IAS +G P+
Sbjct: 210 RGLWHVDDCLMFVAPWSTVNTFDLPEISTIPVWVTLKNIPNRLYSILGISHIASGLGAPM 269

Query: 86  LIDSATQNRVFGHYARVLVDMDLSKHIFNEVM-IERTGFSFSIEITYERLPAFCTHCGNI 144
                  +      A +LV+++LSK     +  +++ G    + + Y  +PA C  CG +
Sbjct: 270 ATYKPRLDPSLMSEANILVEVELSKAFPPRIAAVDKKGNISMVNVEYAWIPAKCGKCGQL 329

Query: 145 GHHNSSCRWLHPVKEPLIDKKKKTIISQKPQPPKWLPRDNLDGIGSSKAFEAPVGNNNAE 204
           GH  S C     +K  L  +K   I+S++   P                  A V   +A 
Sbjct: 330 GHKASRC-----MKPHLAHEKVTEIVSEEIITP------------------AIVSLASAT 366

Query: 205 SIPTTHKVATKLPVQTDLTESADAQHSDSANVSAAIHHSDDEDNLSAAAHHSDDVSPQNV 264
           ++ +   + TK P+   +T S   Q     ++ A      D+DN +  A    +V  + V
Sbjct: 367 NLVSPITLQTKTPIDVPITNS-KIQIDTVFDIEAG--PIQDKDNCTGVADCFTNVEAEVV 423

Query: 265 TKDPLDFEFI 274
           T++    E +
Sbjct: 424 TEETCTVESV 433


>At2g01550 putative non-LTR retroelement reverse transcriptase
          Length = 1449

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 21  RSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHA-QVWVRLHELPQEYWMDRTLKEIAS 79
           R   ++G  N+    + + +WS  F   TQ    + Q+W+ L ++P   + D+ L+ +AS
Sbjct: 173 RRALNRGMWNIMDLPMVVSKWSP-FAEETQPAMKSIQLWITLTDVPPSLFTDKGLEFLAS 231

Query: 80  AIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMI---ERTGFSFSIEITYERLPA 136
           A+G P+ +   T++      A++LV+ DL+K +  E +    E    +  I+ +Y  LP 
Sbjct: 232 AVGKPIRLHPKTESCSSFDEAQLLVEADLTKELPKEFVFTGEEEGELAAVIKYSYPWLPP 291

Query: 137 FCTHCGNIGHHNSSC 151
            C+ C   GH   SC
Sbjct: 292 RCSCCDKWGHLRDSC 306



 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 28/92 (30%), Positives = 48/92 (51%), Gaps = 5/92 (5%)

Query: 427 NVRDNLQPNLWALWSKDLSITVLFVSDQCI--ALQISCHQSIVYIAAVYASTYYLKRRQL 484
           N   N +  LW +W +++  T  + SDQ I  ++++   +   + + VYAS +  +R+ L
Sbjct: 475 NYEFNRRGRLWVVWRENVRFTPFYKSDQLITCSVKLESQEEEFFYSFVYASNFAEERKIL 534

Query: 485 WADL-THIQEHFV--GPWLFVGDFNAVLGAHE 513
           W DL  H+    +   PW+  GDFN +L   E
Sbjct: 535 WNDLRDHMDSPIIRDKPWIIFGDFNEILDMDE 566


>At2g18820 putative non-LTR retroelement reverse transcriptase
          Length = 1412

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 30/92 (32%), Positives = 46/92 (49%), Gaps = 5/92 (5%)

Query: 427 NVRDNLQPNLWALWSKDLSITVLFVSDQCIALQISC-HQSIVYIAA-VYASTYYLKRRQL 484
           N   N    +W +WS  + + V+F S Q I   +   H  + +I + +YAS +  +R++L
Sbjct: 362 NYEFNRLGRIWVVWSSSVQLQVIFKSSQMIVCLVRVEHYDVEFICSFIYASNFVEERKKL 421

Query: 485 WADLTHIQEHFV---GPWLFVGDFNAVLGAHE 513
           W DL ++Q        PWL  GDFN  L   E
Sbjct: 422 WQDLHNLQNSVAFRNKPWLLFGDFNETLKMEE 453


>At2g25550 putative non-LTR retroelement reverse transcriptase
          Length = 1750

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 24/78 (30%), Positives = 42/78 (53%)

Query: 439 LWSKDLSITVLFVSDQCIALQISCHQSIVYIAAVYASTYYLKRRQLWADLTHIQEHFVGP 498
           +W  ++S++++   ++ I   ++ +    Y++ VY      +R QLW  L HI ++    
Sbjct: 452 MWKNNVSLSLISQDERLIDSHVTFNNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAE 511

Query: 499 WLFVGDFNAVLGAHEKCG 516
           WL VGDFN +L   EK G
Sbjct: 512 WLLVGDFNEILSNAEKIG 529



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 33/158 (20%), Positives = 66/158 (40%), Gaps = 4/158 (2%)

Query: 5   LGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHEL 64
           +  G  +F F S E M  V  +G  +    +L +  W  + +    +      WV++  +
Sbjct: 73  IDKGRVQFKFQSEEAMNLVLRRGPWSFNDWMLSIHRWYPNLSEAEMKII--PFWVQITGI 130

Query: 65  PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHI-FNEVMIERTGF 123
           P  +  +   + + + +G    +D    +   G + RV ++ +L   + F        G 
Sbjct: 131 PLLFLTNAMARCVGNRLGHVADVDFDENSNHTG-FVRVRINWNLDDPLRFQRNFQFADGE 189

Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPL 161
           +  I+  +ERL  FCT CG++ H    C      ++P+
Sbjct: 190 NTVIKFRFERLRNFCTKCGSLKHDIKVCTLSFDNEDPV 227


>At2g05290 putative Ta11-like non-LTR retroelement protein
          Length = 383

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 3/154 (1%)

Query: 5   LGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHEL 64
           L    F+F F   ED++ V   G        + +  W +D            +W+RL  +
Sbjct: 74  LSRDRFQFIFKYEEDLQEVLKTGVWTQDDWGVVMERWVEDLPPNYLM--FLLIWLRLRNI 131

Query: 65  PQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIE-RTGF 123
           P  ++   T+K IA  +G  +             Y R+ +  D+SK + N   I+   G 
Sbjct: 132 PVNHYTQATIKSIAKCVGQVIEFPFDENEAQSKDYVRIRILFDVSKGLRNSKEIQLPNGS 191

Query: 124 SFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPV 157
              I I YER+   C  C  + H    C +L  V
Sbjct: 192 MVKIGIDYERIRKRCFQCQRLTHEKPRCPYLPSV 225


>At4g01490 putative transposon protein
          Length = 577

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 52/208 (25%), Positives = 84/208 (40%), Gaps = 18/208 (8%)

Query: 4   ELGNGYFEFYFSSYEDMRSVWSKGTQNLKPGLLRLFEWSKDFTARTQRQTHAQVWVRLHE 63
           +LG G F+F F   ED++ V      +    ++ L  W    +     +     W+ L  
Sbjct: 73  DLGRGCFQFRFEYEEDLQKVLDNRPYHFGQWMVILQRWKPVISPSFPSEI--PFWIELQG 130

Query: 64  LPQEYWMDRTLKEIASAIGTPLLIDSATQNRVFGHYARVLVDMDLSKHIFNEVMIE-RTG 122
           LP  YW    +KE+  AIG          + +    A++ V ++  + I  E ++E   G
Sbjct: 131 LPMHYW----IKEMLYAIGKE--AGEVVDHEISPAAAKIKVLINGLQPITKETVVEFPDG 184

Query: 123 FSFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTIISQKPQ------- 175
               + + Y+ L + C HC  + H  + C  L  V E +    K T   Q PQ       
Sbjct: 185 SEALVYLEYKNLKSHCHHCQRLSHAEADCPGLKKV-EAVSKTSKLTPPEQPPQNYAERNK 243

Query: 176 PPKWLPRDNLDGIGSS-KAFEAPVGNNN 202
             K  PR + D + SS      P+G+ N
Sbjct: 244 GSKQNPRASHDKLLSSHSGLSRPLGDYN 271


>At2g45230 putative non-LTR retroelement reverse transcriptase
          Length = 1374

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 31/114 (27%), Positives = 47/114 (41%)

Query: 439 LWSKDLSITVLFVSDQCIALQISCHQSIVYIAAVYASTYYLKRRQLWADLTHIQEHFVGP 498
           +W   + I VL    + I   +       Y+  +Y      +R +LW  LT +     GP
Sbjct: 71  MWKDSVQIKVLQSDKRLIDALLIWQDKEFYLTCIYGEPVQAERGELWERLTRLGLSRSGP 130

Query: 499 WLFVGDFNAVLGAHEKCGRRPPPPLSCLDFLNWSNANYLLHSRLCLVGFATYGD 552
           W+  GDFN ++   EK G       SCL+F    N+  L         F+ YG+
Sbjct: 131 WMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGN 184


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,118,775
Number of Sequences: 26719
Number of extensions: 566370
Number of successful extensions: 1857
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1721
Number of HSP's gapped (non-prelim): 132
length of query: 559
length of database: 11,318,596
effective HSP length: 104
effective length of query: 455
effective length of database: 8,539,820
effective search space: 3885618100
effective search space used: 3885618100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)