BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135319.4 - phase: 0
(581 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31080 putative non-LTR retroelement reverse transcriptase 220 1e-57
At3g32110 non-LTR reverse transcriptase, putative 217 2e-56
At2g45230 putative non-LTR retroelement reverse transcriptase 177 1e-44
At2g17610 putative non-LTR retroelement reverse transcriptase 168 9e-42
At4g08830 putative protein 165 7e-41
At2g07650 putative non-LTR retrolelement reverse transcriptase 159 5e-39
At2g05200 putative non-LTR retroelement reverse transcriptase 156 3e-38
At1g47910 reverse transcriptase, putative 145 5e-35
At4g09710 RNA-directed DNA polymerase -like protein 145 8e-35
At3g45550 putative protein 144 2e-34
At4g29090 putative protein 143 2e-34
At2g17910 putative non-LTR retroelement reverse transcriptase 140 2e-33
At2g16680 putative non-LTR retroelement reverse transcriptase 139 4e-33
At2g01840 putative non-LTR retroelement reverse transcriptase 135 5e-32
At2g15540 putative non-LTR retroelement reverse transcriptase 133 3e-31
At2g28980 putative non-LTR retroelement reverse transcriptase 132 5e-31
At2g23880 putative non-LTR retroelement reverse transcriptase 129 6e-30
At1g23990 reverse transcriptase, putative 128 1e-29
At1g47850 hypothetical protein 126 3e-29
At4g15590 reverse transcriptase like protein 121 1e-27
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 220 bits (561), Expect = 1e-57
Identities = 157/598 (26%), Positives = 269/598 (44%), Gaps = 23/598 (3%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGT- 59
+ RLA WK R L+ GR+TL +VL+SIP + M LP + D++D+ +R F+W T
Sbjct: 635 VSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTM 694
Query: 60 TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYT- 118
K HL++W+KI PK GG+ +R+AR+ N +L+ K+ W ++Q LW ++ KY
Sbjct: 695 EKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKV 754
Query: 119 -GGHNTLYASANNRSSPTWSSI-IRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPI--- 172
G +T + R S TW S+ + + ++ G W G G + FW W P+
Sbjct: 755 GGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVEL 814
Query: 173 -GNYVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIW 231
+ +P + ++++ L G + +L LP V+ + ++ Q D + W
Sbjct: 815 GTDMIP--EGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISW 872
Query: 232 SQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLS 291
++G +T +S ++ L+ V + ++ IW+L PE+ + IWL QN + T
Sbjct: 873 KGTQDGAFTVRSAYS-LLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNV 931
Query: 292 LLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQK-IGFTSNDFVTTATTYDWIKL 350
R ++ + IC+ C +ET +H +RDC + IW++ + + + + +W+
Sbjct: 932 ERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFT 991
Query: 351 G---ISGSRSSIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNIISAADAAN----SAFNG 403
+ G ++F G+WW W+ R + RL I A+ A
Sbjct: 992 NMDPVKGIWPTLFGMGIWWAWKWRCCDVFGERKICRDRL-KFIKDMAEEVRRVHVGAVGN 1050
Query: 404 EENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSGLIPNS 463
N +R+++W + + DG+ G GG +RN G ++ GF+ L S
Sbjct: 1051 RPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFA-LNIGS 1109
Query: 464 ADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQNIKDLL 523
LAEL + GL + D + D L V ++ H + L++ +
Sbjct: 1110 CAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFF 1169
Query: 524 -NDRNISLHHTLREGNQCADFFAKFGANSDAALVVHQSPPADLLPLLRADALGIYFVR 580
D + + H RE N+ AD A + L + P + LL AD G F R
Sbjct: 1170 TRDWLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEGVRLLLLADVNGTEFPR 1227
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 217 bits (552), Expect = 2e-56
Identities = 165/599 (27%), Positives = 267/599 (44%), Gaps = 41/599 (6%)
Query: 3 TRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGT-TN 61
+RLA WK R+L+ GRLTL +VLTSI + M T LPQ+ D +D+ +R F+W T
Sbjct: 1313 SRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEK 1372
Query: 62 KGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGG- 120
K HLV W ++ LP+ GGL IR+A N +L+ K+ W ++ + LW ++ +KY G
Sbjct: 1373 KKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGD 1432
Query: 121 -HNTLYASANNRSSPTWSSI-IRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVP 177
H+ + A + S TW S+ + ++++ W IG G FW W S +PI
Sbjct: 1433 VHDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPIA---- 1488
Query: 178 VIDVHDLQLSVRDVLSAPGNHARVLYTN---------LPPDVENHINNIHTQFNDNI--- 225
D + LS+ +L AR L+ + P +N ++ D++
Sbjct: 1489 --DDSIVPLSLAQMLCT----ARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGA 1542
Query: 226 EDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQN 285
D L W +G +T KS F L P + + + +W+++ PE+ + +WL
Sbjct: 1543 HDRLAWGMTSDGRFTVKSAFAMLTNDDSPR-QDMSSLYGRVWKVQAPERVRVFLWLVVNQ 1601
Query: 286 AVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI--GFTSNDFVTTAT 343
A+ T S R + S +C C E+ +H +RDC IW +I F T +
Sbjct: 1602 AIMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSL 1661
Query: 344 ---TYDWIKLGI---SGSRSSIFLAGLWWVWRHR--NLMCLNNETLSLFRLCNNI-ISAA 394
Y ++ G+ S++F +WW W+ R N+ N R ++ + +
Sbjct: 1662 LEWLYSNLRQGLMTEGSDWSTMFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAVEVS 1721
Query: 395 DAANSAFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFIS 454
A + + ++ ++W + +N DG+ G P GGVLRNSAG +
Sbjct: 1722 IAYSREVELRLSGLRVNKPIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCG 1781
Query: 455 GFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAA 514
GF+ I LAEL ++ GL + + + DS + V + H +
Sbjct: 1782 GFAVNI-GRCSAPLAELWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPLSF 1840
Query: 515 LIQNIKDLLN-DRNISLHHTLREGNQCADFFAKFGANSDAALVVHQSPPADLLPLLRAD 572
L++ + L+ D + + H RE N AD A + L V P L+ LL D
Sbjct: 1841 LVRLCHNFLSKDWTVRISHVYREANSLADGLANHAFSLSLGLHVFDEIPISLVMLLSED 1899
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 177 bits (450), Expect = 1e-44
Identities = 150/588 (25%), Positives = 245/588 (41%), Gaps = 62/588 (10%)
Query: 4 RLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-K 62
++ W++ L+ G+ L +V ++P+Y M +P+ IC I+ F W+ +
Sbjct: 775 KVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGR 834
Query: 63 GIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHN 122
G+H W +S PK +GGL + N +LLGK +W M+ + L + ++Y +
Sbjct: 835 GLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSD 894
Query: 123 TLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPVIDV 181
L A +R S W SI A+ ++K G IG+G + + W W P V
Sbjct: 895 PLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRS 954
Query: 182 HDLQLSVRDVLSAPGNHARVLYTNLPPDVEN-HINNIHTQFNDNIE-------------- 226
H V N V+ L PD + + N + F DN +
Sbjct: 955 H-------LVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETR 1007
Query: 227 DALIWSQNKNGTYTTKSGFNWLITSRV-----------PAIEPILHAWSWIWRLKVPEKY 275
D W +++G Y+ KSG+ W++T + P+++PI + IW+L VP K
Sbjct: 1008 DRFTWEYSRSGHYSVKSGY-WVMTEIINQRNNPQEVLQPSLDPI---FQQIWKLDVPPKI 1063
Query: 276 KFLIWLACQNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTS 335
+W N + S L +R +A C RC ET H + C F++ W +
Sbjct: 1064 HHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPA 1123
Query: 336 ---NDFVTTATTYDWIKLGISGSR------SSIFLAGLWWVWRHRNLMCLNNETLSLFRL 386
++ + L + S+ ++ LW +W++RN + F
Sbjct: 1124 PPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGRE---FTA 1180
Query: 387 CNNIISAADAANSAFNGEENPPH-----SDRLVKWNNRNHQDFILNVDGSCIGTPPRTGY 441
I+ A + ++ N +E P DR VKW +H N DG+ G
Sbjct: 1181 PQVILKATEDMDAWNNRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGV 1240
Query: 442 GGVLRNSAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNL 501
G VLRN G + +P+ +L E+ A+ + ++ N ++ SDS V+L
Sbjct: 1241 GWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSL 1300
Query: 502 IAN--DTPRYHIYAALIQNIKDLLND-RNISLHHTLREGNQCADFFAK 546
I N D P A IQ+I++LL + T REGN AD A+
Sbjct: 1301 IQNEMDIPS---LAPRIQDIRNLLRHFEEVKFQFTRREGNNVADRTAR 1345
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 168 bits (425), Expect = 9e-42
Identities = 146/553 (26%), Positives = 229/553 (41%), Gaps = 49/553 (8%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
M ++ +W N+LL+ G+ L S++T+IP+Y M LP + I R F W T
Sbjct: 227 MDQKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTK 286
Query: 61 NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
K I V W K++ PK +GGL+IR ++ N +LL K W ++Q L + KY
Sbjct: 287 VKHKIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFP 346
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPV 178
L A A ++SS W SI+ ++ G + G+G++ W NW L+P V
Sbjct: 347 KERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGT 406
Query: 179 IDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGT 238
D QL V D+L + +L + + HI I DA+ W +G
Sbjct: 407 CDSIYSQLKVSDLLIEGRWNEDLLCKLIHQNDIPHIRAIRPSIT-GANDAITWIYTHDGN 465
Query: 239 YTTKSGFNWL--ITSRVPAIEPILH------AWSWIWRLKVPEKYKFLIWLACQNAVPTL 290
Y+ KSG++ L ++ + A P + ++ IW+ P K K W + NA+PT
Sbjct: 466 YSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTA 525
Query: 291 SLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI--------GFTSNDFVTTA 342
L R + C RCGE E H + C SK+IW++ SN F
Sbjct: 526 GNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSNSFNQNL 585
Query: 343 TTYDWIKLGISGSRS-SIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNIISAADAANSAF 401
+ KL S + S+F W +W+ RN + NN+ S+ + +
Sbjct: 586 ESIQ--KLNQSARKDVSLFPFIGWRIWKMRNDLIFNNKRWSIPDSIQKALIDQQQWKESL 643
Query: 402 NGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLR-----NSAGLFISGF 456
N E +L +N C YGG L+ + A + G
Sbjct: 644 NCNEQQQRKPQLHDSHN-----------NKC--------YGGHLKTLRTLSKAQFVLRGM 684
Query: 457 SGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTP--RYHIYAA 514
S + P S L AE A+ + + L +I+ + D I T Y A
Sbjct: 685 SSIPPTSTP-LEAEAEALKLAMIHLQRLGYEDIIFHGDVAALFQPITRTTHSCEYSPIAT 743
Query: 515 LIQNIKDLLNDRN 527
+++I+++ D N
Sbjct: 744 FLRDIENIAADTN 756
>At4g08830 putative protein
Length = 947
Score = 165 bits (417), Expect = 7e-41
Identities = 137/538 (25%), Positives = 228/538 (41%), Gaps = 66/538 (12%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
+ +RLA WK R L+ GRLTL SVL+ IP + M T LPQ+ + +D+ R F+ +
Sbjct: 449 VSSRLAGWKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLGSSA 508
Query: 61 NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
K +HLV W ++ LPK+ GGL IR ++ N +L+ K+ W ++ LW +L +KY
Sbjct: 509 EKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARILRSKYRV 568
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPV 178
G + ++ G W +G+G FW NW S + N +
Sbjct: 569 G---------------------LREVVSRGSRWVVGNGRDILFWSDNWLSHEALINRAVI 607
Query: 179 -IDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHIN-NIHTQFNDNI---EDALIWSQ 233
I + +L V+D+ + N + P + H + D++ D L W
Sbjct: 608 EIPNSEKELRVKDLWA---NGLGWKLDKIEPYISYHTRLELAAVVVDSVTGARDRLSWGY 664
Query: 234 NKNGTYTTKSGFNWLITSRVPAIEPILHA-WSWIWRLKVPEKYKFLIWLACQNAVPTLSL 292
+ +G +T KS + L P P + A + +WR+ E+ K +W
Sbjct: 665 SADGVFTVKSAYRLLTEDHDP--RPNMAAFFDRLWRVVALERVKTFLW------------ 710
Query: 293 LYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDF-VTTATTYDW--IK 349
+ + +C C DET +H ++DC IW+++ + + + W +
Sbjct: 711 ----HIGDTSVCQVCKGGDETILHVLKDCPSIAGIWRRLVQVQRSYDFFNGSLFGWLYVN 766
Query: 350 LGISGSR-----SSIFLAGLWWVWRHRNLMCLN-----NETLSLFRLCNNIISAADAANS 399
LG+ + +++F +WW W+ R + + FR +S A A +S
Sbjct: 767 LGMKNAETGYAWATLFAIVVWWSWKWRCGYVFGEVGKCRDRVKFFRDLAAEVSHAHAIHS 826
Query: 400 AFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSGL 459
G +RLV W + + LN DG+ G GGVLR+ G + GF+ L
Sbjct: 827 QNGGLRT--RVERLVAWKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFA-L 883
Query: 460 IPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQ 517
LAEL ++ GL + + + DS L V + H + L++
Sbjct: 884 DIGVCSAPLAELWGVYYGLYMAWERRFTRVELEVDSELVVGFLTTGISDTHSLSFLVR 941
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 159 bits (401), Expect = 5e-39
Identities = 105/391 (26%), Positives = 188/391 (47%), Gaps = 38/391 (9%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIW-RGT 59
+ TRLA WK R L+ GR+TL +VL+SIP + M T LP++ D +D+ +R+F+W
Sbjct: 297 LTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSV 356
Query: 60 TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKY-- 117
T + HL++WK++ P++ GGL IR A++ N +LL K+ W ++Q + LW ++ Y
Sbjct: 357 TQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRV 416
Query: 118 TGGHNTLYASANNRSSPTWSSI-IRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNY 175
+ + + S TW S+ + + ++ G +W IG G FW W + P+
Sbjct: 417 QDVRDGAWTKVRSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFWMDKWLTNIPLA-- 474
Query: 176 VPVIDVHDLQLSVRDVLSA-PGNHARVLYTN--------LPPDVENHINNIHTQ--FNDN 224
+L V++ + G AR L N + P + ++ N + Q D+
Sbjct: 475 ---------ELLVQEPPAGWKGMRARDLRRNGIGWDMATIAPYISSY-NRLQLQSFVLDD 524
Query: 225 I---EDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWL 281
I D + W ++++G + + +++L P + + + +W + PE+ + +WL
Sbjct: 525 ITGARDRISWGESQDGRFKVSTTYSFLTRDEAPR-QDMKRFFDRVWSVTAPERVRLFLWL 583
Query: 282 ACQNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTT 341
Q A+ T + R ++ + IC C E+ +H +RDC + IW ++ + V+
Sbjct: 584 VAQQAIMTNQERHRRHLSTTTICQVCKGAKESIIHVLRDCPAMEGIWLRLISDLANEVSA 643
Query: 342 ATTYDWIKLGISGSRSSIFLAGLWWVWRHRN 372
A L +SG+ I WR N
Sbjct: 644 A------HLKLSGNTKEIVQVERQVSWRKPN 668
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 156 bits (394), Expect = 3e-38
Identities = 144/554 (25%), Positives = 226/554 (39%), Gaps = 31/554 (5%)
Query: 7 SWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-KGIH 65
SW +R L++ G+ + +VL S+P Y M LP +C I F W + +
Sbjct: 673 SWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTS 732
Query: 66 LVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHNTLY 125
V W K++ PKN GGL R N SLL KL W ++ S L +L KY + +
Sbjct: 733 WVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFME 792
Query: 126 ASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLS-PIGNYVPVIDVH- 182
++ S W SII + ILK+G W I +G S W W S+S P+ P + H
Sbjct: 793 CKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQ 852
Query: 183 DLQLSV---RDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGTY 239
DL++S ++ L N V+ P+ EN I + + + D L W K+G Y
Sbjct: 853 DLRVSALINQNTLQWDWNKIAVIL----PNYENLIKQLPAPSSRGV-DKLAWLPVKSGQY 907
Query: 240 TTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSLLYHRSMA 299
T++SG+ + +P + + S +W+L+ K K L+W A A+P L R ++
Sbjct: 908 TSRSGYGIASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHIS 967
Query: 300 PSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYD---WIKLGISGSR 356
PS C RCG + T H C F+ +W+ ++ D +K I
Sbjct: 968 PSAACHRCGAPEST-THLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLKKAIILPP 1026
Query: 357 SSIFLAGL--WWVWRHRNLMCLNNETLSLFRLCNNIISAADAANSAFNGEENPPHSDRLV 414
+ + A L W + L + L A +A N H +
Sbjct: 1027 TGVTSAALFPWICGIYGKLGTMTRAILDAL--------AWQSAQRCLPKTRNVVHPISQL 1078
Query: 415 KWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGL--FISGFSGLIPNSADILLAELT 472
+ F VD + I G G V +++ L + +S L AE
Sbjct: 1079 PVLRSGYFCF---VDAAWIAQSSLAGSGWVFQSATALEKETATYSAGCRRLPSALSAEAW 1135
Query: 473 AIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQNIKDLLNDRNISLHH 532
AI L L ++M SDS V+ + ++ IY L++ ++ ++ +
Sbjct: 1136 AIKSALLHALQLGRTDLMVLSDSKSVVDALTSNISINEIYGLLMEIRALRVSFHSLCFNF 1195
Query: 533 TLREGNQCADFFAK 546
R N AD AK
Sbjct: 1196 ISRSANAIADATAK 1209
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 145 bits (367), Expect = 5e-35
Identities = 132/570 (23%), Positives = 236/570 (41%), Gaps = 28/570 (4%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGT- 59
+Q+R+ W + L+K G+ + SV ++P Y M LP+ I + F W
Sbjct: 556 LQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNG 615
Query: 60 TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
++G+H + W K+ K+ GGL R + N++LL K +W ++ + + L+ + +Y
Sbjct: 616 DSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFR 675
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPV 178
N L + + S W S+I A++++ G R+GSG+S S W W
Sbjct: 676 KSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYG 735
Query: 179 IDVHDLQLSVRDVLSAPGNHARV-LYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNG 237
+ D L V+ ++ + N + L L + + + N N+ED L W K G
Sbjct: 736 GSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAG 795
Query: 238 TYTTKSGFNWL---ITSRVPAIEPILHAW-SWIWRLKVPEKYKFLIWLACQNAVPTLSLL 293
YT KSG++ + I P L ++IW+++ P K + +W VP L
Sbjct: 796 NYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENL 855
Query: 294 YHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIG-------FTSNDFVTTATTYD 346
R + C CG +E+ H + C ++ IW F SN T
Sbjct: 856 RKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLF 915
Query: 347 WIKLGISGSRSSIFLAGLWWVWRHRNLMCLNN---ETLSLFRLCNNIISAADAANSAFNG 403
W SG S+ + +W++W+ RN N + + + L + A +
Sbjct: 916 W--RIPSGVDSAPYPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQVELHS 973
Query: 404 EENPPHS-DRLVK----WNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSG 458
E + S D ++ + F +DGS + +G G +S G + +
Sbjct: 974 ERHGSLSIDSRIRVRDVSQDTTFSGFRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAA 1033
Query: 459 LIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDT--PRYHIYAALI 516
+ S L E+ A+ +K + + + ++D V ++++ T P + +Y +
Sbjct: 1034 NVRRSLSPLHTEMEALLWAMKCMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVYLEEL 1093
Query: 517 QNIKDLLNDRNISLHHTLREGNQCADFFAK 546
Q+ ++ N SL R N AD A+
Sbjct: 1094 QSDREEFT--NFSLSLISRSANVKADKLAR 1121
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 145 bits (365), Expect = 8e-35
Identities = 145/572 (25%), Positives = 242/572 (41%), Gaps = 50/572 (8%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
++ R SW R L+ G+ L +VL+S+PSY M LP ++C I F W
Sbjct: 713 IRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKP 772
Query: 61 NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
+K + V+W K++LP N GGL R + KL W +++ + L +L KY
Sbjct: 773 DKRKMAWVSWDKLTLPINEGGLGFR-------EIEAKLSWRILKEPHSLLSRVLLGKYCN 825
Query: 120 GHNTLYASAN-NRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVP 177
+ + SA+ + +S W I+ +++L+ G W IG G S + W W LSP P
Sbjct: 826 TSSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAW--LSPSSPQTP 883
Query: 178 V---------IDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDA 228
+ + VHDL DV S + + +LP E+ I I ++D+
Sbjct: 884 IGPPTETNKDLSVHDL--ICHDVKSW---NVEAIRKHLP-QYEDQIRKITINALP-LQDS 936
Query: 229 LIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVP 288
L+W K+G YTTK+G+ + PA + + IW++ K K +W A + A+P
Sbjct: 937 LVWLPVKSGEYTTKTGYALAKLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALP 996
Query: 289 TLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYDWI 348
L R++ C RCG + E+ +H + C ++K +W+ N + T+ +
Sbjct: 997 VGEALSRRNIEAEVTCKRCG-QTESSLHLMLLCPYAKKVWELAPVLFN---PSEATHSSV 1052
Query: 349 KLGISGSRSSIFLAG------------LWWVWRHRNLMCLNNETLSLFRLCNNIISAADA 396
L + ++ + L LW +W+ RN + +N + S L I A A
Sbjct: 1053 ALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARA 1112
Query: 397 ANSAFNGEENP-PHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISG 455
A +P P SD N ++ + G G G L++ + I
Sbjct: 1113 WMEAQLLIHHPSPISDYPSPTPNLKVTSCFVDAAWTTSG---YCGMGWFLQDPYKVKIKE 1169
Query: 456 FSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAAL 515
L+AE A+H L V ++ +SD ++L+ N L
Sbjct: 1170 NQSSSSFVGSALMAETLAVHLALVDALSTGVRQLNVFSDCKELISLL-NSGKSIVELRGL 1228
Query: 516 IQNIKDL-LNDRNISLHHTLREGNQCADFFAK 546
+ +I++L ++ ++ R N AD AK
Sbjct: 1229 LHDIRELSVSFTHLCFFFIPRLSNVVADSLAK 1260
>At3g45550 putative protein
Length = 851
Score = 144 bits (362), Expect = 2e-34
Identities = 111/403 (27%), Positives = 178/403 (43%), Gaps = 32/403 (7%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
++ R ASW + L+ G+ L SV ++P Y M LPQ I I+ NF W +
Sbjct: 393 VKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKAS 452
Query: 61 NK-GIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
NK GI V WK++ K GGL R + N +LL K W ++Q N L+ ++ +Y
Sbjct: 453 NKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFK 512
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSSSFWFSNWNSLSPIGNYVP-- 177
++ + A ++ S WSS++ +L+ G + IG G + + + ++ P
Sbjct: 513 DNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKT----IRLGIDNVVDSHPPRP 568
Query: 178 -VIDVHDLQLSVRDVLSAPGNHARV-----LYTNLPPDVENHINNIHTQFNDNIEDALIW 231
+ D LS+ ++ G H+R L T + ++I I+ D LIW
Sbjct: 569 LLTDEQHNGLSLDNLFQHRG-HSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSK-TDRLIW 626
Query: 232 SQNKNGTYTTKSGFNWLIT----SRVPAI---EPILHAWSWIWRLKVPEKYKFLIWLACQ 284
S N G YT +SG+ WL T + +P + + + IW L + K K +W
Sbjct: 627 SYNSTGDYTVRSGY-WLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILS 685
Query: 285 NAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQ-------KIGFTSND 337
A+PT L R M P C RC E+E+ H + C F+ W+ + SN+
Sbjct: 686 KALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNN 745
Query: 338 FVTTATTYDWI--KLGISGSRSSIFLAGLWWVWRHRNLMCLNN 378
+ + I+ S+ I LW +W+ RN + NN
Sbjct: 746 IEDNISNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNN 788
>At4g29090 putative protein
Length = 575
Score = 143 bits (361), Expect = 2e-34
Identities = 135/558 (24%), Positives = 225/558 (40%), Gaps = 48/558 (8%)
Query: 28 SIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-KGIHLVNWKKISLPKNIGGLSIRAA 86
++P+Y M LP+ +C I +F WR KG+H W +S K GG+ +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 87 REANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHNTLYASANNRSSPTWSSIIRAKNIL 146
N +LLGK +W M+ L + ++Y + L A +R S W SI ++ IL
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 147 KDGYTWRIGSGSS-SFWFSNWNSLSPIG-----NYVPVIDVHDLQ--LSVRDVLSAPGNH 198
+ G +G+G W W P VP + + L V D++ G
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 199 ARV-LYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGTYTTKSGFNWLITSRV---- 253
R + L P+VE + I D+ W +G YT KSG+ W++T +
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGY-WVLTQIINKRS 240
Query: 254 -------PAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSLLYHRSMAPSPICTR 306
P++ PI + IW+ + K + +W N++P L +R ++ C R
Sbjct: 241 SPQEVSEPSLNPI---YQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIR 297
Query: 307 CGEEDETFMHCVRDCCFSKDIWQ------KIGFTSNDFVTTATTYDWIKLGISGSR---- 356
C ET H + C F++ W +G D + Y LG +
Sbjct: 298 CPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSI-YVNLYWVFNLGNGNPQWEKA 356
Query: 357 SSIFLAGLWWVWRHRNLMCLNNETLS----LFRLCNNIISAADAANSAFNGEENPPHSDR 412
S + LW +W++RN + + L R +++ + G + +
Sbjct: 357 SQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSS 416
Query: 413 LVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSGLIPNSADILLAELT 472
+W HQ N D + R G G VLRN G + +P +L AEL
Sbjct: 417 CGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELE 476
Query: 473 AIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAAL---IQNIKDLLND-RNI 528
A+ + ++ N ++ SDS + + ++ ND I+ +L IQ+++ LL+ +
Sbjct: 477 AMRWAVLSLSRFQYNYVIFESDSQVLIEILNND----EIWPSLKPTIQDLQRLLSQFTEV 532
Query: 529 SLHHTLREGNQCADFFAK 546
REGN A+ A+
Sbjct: 533 KFVFIPREGNTLAERVAR 550
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 140 bits (353), Expect = 2e-33
Identities = 105/438 (23%), Positives = 196/438 (43%), Gaps = 27/438 (6%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
+Q+RL W + L++ G+ L S+ ++P Y M LP+N+C + +F W
Sbjct: 750 LQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQ 809
Query: 61 NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
K IH ++W++++LPK+ GG + + N +LL K W ++Q L+ + ++Y
Sbjct: 810 QKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFS 869
Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSSSF-----WFSNWNSLSPIGN 174
+ L A+ +R S W SI+ + +L G IG+G +F W + ++ P+ N
Sbjct: 870 NSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPL-N 928
Query: 175 YVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLP-PDVENHINNIHTQFNDNIEDALIWSQ 233
I+V DL++S ++ + +L P DVE + F ED+ W
Sbjct: 929 RRRFINV-DLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFK---EDSFCWLH 984
Query: 234 NKNGTYTTKSGFNWLITS------RVPAIEPILHA-WSWIWRLKVPEKYKFLIWLACQNA 286
+ NG Y+ K+G+ +L + ++P +++ + IW L K + +W A A
Sbjct: 985 SHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGA 1044
Query: 287 VPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYD 346
+P L R + C C E+ET H + +C ++ +W +S + + Y
Sbjct: 1045 IPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYT 1104
Query: 347 WIKLGISGSRSS------IFLAG--LWWVWRHRNLMCLNNETLSLFRLCNNIISAADAAN 398
+ I ++ + F++ LW++W++RN + + L + A
Sbjct: 1105 NMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWF 1164
Query: 399 SAFNGEENPPHSDRLVKW 416
SA +N ++ KW
Sbjct: 1165 SAQTHMQNDEKHLKITKW 1182
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 139 bits (350), Expect = 4e-33
Identities = 115/482 (23%), Positives = 204/482 (41%), Gaps = 48/482 (9%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGT- 59
+Q+ L+ W ++ L++ G+ L S+ ++P Y M LP+ +C + +F W
Sbjct: 724 LQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSME 783
Query: 60 -TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYT 118
+NK IH + KK++LPK++GG + + N +LL K W + S + + ++Y
Sbjct: 784 FSNK-IHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYF 842
Query: 119 GGHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSG-SSSFWFSNW----NSLSPIG 173
+ L A R S TW SI+ + +L G IG+G ++ W W +S P+
Sbjct: 843 MNTDFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPM- 901
Query: 174 NYVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQ 233
N ++++H + D L+ N ++ DV+ +H + + ED+ W+
Sbjct: 902 NLHSLMNIHMKVSHLIDPLTRNWNLKKLTELFHEKDVQ---LIMHQRPLISSEDSYCWAG 958
Query: 234 NKNGTYTTKSGFN----------WLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLAC 283
NG YT KSG+ + P++ P+ + +W L+ K K +W A
Sbjct: 959 TNNGLYTVKSGYERSSRETFKNLFKEADVYPSVNPL---FDKVWSLETVPKIKVFMWKAL 1015
Query: 284 QNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIW-------QKIGFTSN 336
+ A+ L R + + C C EE ET H + C F++ +W GF ++
Sbjct: 1016 KGALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTS 1075
Query: 337 DFVT-TATTYDWIKLGISGSRSSIFLAGLWWVWRHRNLMCLNNETLS-------LFRLCN 388
F + GI ++ LW +W++RN L+ + CN
Sbjct: 1076 IFSNINHVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECN 1135
Query: 389 NIISAADAANSAFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNS 448
I+A + ++ + E+ KWN + N+ + G VLR+S
Sbjct: 1136 LWINAQEKSSGGVSPSEH--------KWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDS 1187
Query: 449 AG 450
G
Sbjct: 1188 MG 1189
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 135 bits (341), Expect = 5e-32
Identities = 136/592 (22%), Positives = 229/592 (37%), Gaps = 53/592 (8%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
++ R W L+ G+ + ++ ++P Y M LP IC+ I+ F W
Sbjct: 1134 VKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWG--- 1190
Query: 61 NKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGG 120
+N G L + + N +LL K W ++ + L L Y
Sbjct: 1191 --------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPN 1236
Query: 121 HNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSSS-FWFSNW-NSLSPIGNYVPV 178
L A+ +S W+SI K +L+ G R+G G ++ W W +L P P+
Sbjct: 1237 TTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPARGPI 1296
Query: 179 IDVHDLQLSVRDVLSAPGNH-ARVLYTN-LPPDVENHINNIHTQFNDNIEDALIWSQNKN 236
+D + V D+ V++ L P+ + +++ N D+ W+ +N
Sbjct: 1297 LDE---DMKVADLWRENKREWDPVIFEGVLNPEDQQLAKSLYLS-NYAARDSYKWAYTRN 1352
Query: 237 GTYTTKSGFNWLITSRVPAIEPILHAWSW-------IWRLKVPEKYKFLIWLACQNAVPT 289
YT +SG+ W+ T E I++ IWRLK+ K K IW A+ T
Sbjct: 1353 TQYTVRSGY-WVATHVNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALST 1411
Query: 290 LSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFT-SNDFVTTATTYDWI 348
+ L +R++ P C RC DET H + C +++ +W+ F+ SN T + I
Sbjct: 1412 TTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENI 1471
Query: 349 KLGISGSRSS--IFLAGL------WWVWRHRNLMCLNNETLSLFRLCNNIISAA------ 394
+L + G ++ L GL W +W+ RN +++ A
Sbjct: 1472 RLILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVET 1531
Query: 395 ---DAANSAFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGL 451
D A S + N R +W++ N D + T G +LR+ G
Sbjct: 1532 MVNDTAISHNTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGR 1591
Query: 452 FISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHI 511
+ + S L AE L++V + D+L NLI N T +H+
Sbjct: 1592 VLHSGCAKLQQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLI-NKTEDHHL 1650
Query: 512 YAALIQNIKDLLNDRNI-SLHHTLREGNQCADFFAKFGANSDAALVVHQSPP 562
L+ +I+ + S+ + RE N AD K+ + + PP
Sbjct: 1651 LETLLYDIRFWMTKLPFSSIGYVNRERNLAADKLTKYANSMSSLYETFHVPP 1702
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 133 bits (334), Expect = 3e-31
Identities = 125/488 (25%), Positives = 204/488 (41%), Gaps = 35/488 (7%)
Query: 43 ICDSIDQTTRNFIWRGTT-NKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDM 101
I + NF W+ + GIH + W K+ P + GGL R E N LL K +W +
Sbjct: 694 IRSKLSSVVANFWWKTREESNGIHWIAWDKLCTPFSDGGLGFRTLEEFNLVLLAKQLWRL 753
Query: 102 VQSSNKLWVSLLSNKYTGGHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGS-SS 160
++ N L +L +Y + + NR S W SI+ AK +L G IGSG +
Sbjct: 754 IRFPNSLLSRVLRGRYFRYSDPIQIGKANRPSFGWRSIMAAKPLLLSGLRRTIGSGMLTR 813
Query: 161 FWFSNWNSLSPIGNYVPVIDVHDLQLSVRDVLSAPGNHARV--LYTNLPPDVENHINNIH 218
W W P ++++ D L V D++ ++ L + P I I
Sbjct: 814 VWEDPWIPSFPPRPAKSILNIRDTHLYVNDLIDPVTKQWKLGRLQELVDPSDIPLILGIR 873
Query: 219 TQFNDNIEDALIWSQNKNGTYTTKSGFNWLI------TSRVPAIEPILHA-WSWIWRLKV 271
+D WS K+G YT KSG+ W T +P P + A + +W++K
Sbjct: 874 PSRTYKSDD-FSWSFTKSGNYTVKSGY-WAARDLSRPTCDLPFQGPSVSALQAQVWKIKT 931
Query: 272 PEKYKFLIWLACQNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI 331
K+K W + T L+ R + +C RCG E+E+ H + C S+ IW
Sbjct: 932 TRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALS 991
Query: 332 GFTSNDFVTTATT----YDWI-----KLGISGSRSSIFLAGLWWVWRHRNLMCLNNETLS 382
S++++ + +D++ + I+ IF LW++W+ RN N S
Sbjct: 992 PIPSSEYIFPRNSLFYNFDFLLSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIES 1051
Query: 383 LFRLCNNIISAADA---ANSAFNGEENPPHSDRLVKWN---NRNHQDFILNVDGSCIGTP 436
+ + I A+ ANS E PP ++V N RN + D S
Sbjct: 1052 PQVILDFAIQEANVWKQANSKEVATEYPP--PQVVPANLPPTRN----VCQFDASWHLKD 1105
Query: 437 PRTGYGGVLRNSAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSL 496
+G+G VL + + + G S L AE+ ++ ++ + L V++ SDS
Sbjct: 1106 TLSGHGWVLVDQDIVLLLGLKS-ARKSLSPLHAEVDSLLWAMECMISLGVSDCSFASDSA 1164
Query: 497 LAVNLIAN 504
++L+ N
Sbjct: 1165 DFISLLEN 1172
>At2g28980 putative non-LTR retroelement reverse transcriptase
Length = 1529
Score = 132 bits (332), Expect = 5e-31
Identities = 108/435 (24%), Positives = 186/435 (41%), Gaps = 47/435 (10%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRG-T 59
++T+++SW R L+ GRL L NSV+ SI +++M LP I++ F+W G
Sbjct: 1090 VKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPV 1149
Query: 60 TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
N + W I PK GGL I++ EAN KL+W ++ + LWV+ +
Sbjct: 1150 LNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFII- 1208
Query: 120 GHNTLYASANNRSSP---TWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNY 175
+ SAN RSS W +++ + + K + + +GSS SFW+ +W+ L + +
Sbjct: 1209 -RKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLGRLLDI 1267
Query: 176 VPVIDVHDLQLSVRDVLSA------PGNHARVLYTNLPPDVENHINNIHTQFNDNIEDAL 229
V DL + + L H +Y + +++ + Q + D
Sbjct: 1268 TGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYNRINAEIQ----RLQQQEREAGPDIS 1323
Query: 230 IWSQNKNG---TYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNA 286
+W KN + TK +N V +P + + +W KY FL+WL QN
Sbjct: 1324 LWRSLKNDFNKRFITKVTWN-----NVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNR 1378
Query: 287 VPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYD 346
+ T + + CT C +ET H C ++ +W+ + + ++T + D
Sbjct: 1379 LSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEAL---TQRLLSTNYSRD 1435
Query: 347 WIKLGISGSRSS-----------IFLAGLWWVWRHRNLMC---LNNETLSLFRLC----- 387
W +L S+ +F A ++ +WR RN +++ T L +L
Sbjct: 1436 WNRLFTLLCTSNLPRDHLFLFRYVFQASIYHIWRERNARRHGEISSPTNRLIKLIDKTVR 1495
Query: 388 NNIISAADAANSAFN 402
N I S D + +N
Sbjct: 1496 NRISSIRDTGDHNYN 1510
>At2g23880 putative non-LTR retroelement reverse transcriptase
Length = 1216
Score = 129 bits (323), Expect = 6e-30
Identities = 93/347 (26%), Positives = 156/347 (44%), Gaps = 29/347 (8%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRG-T 59
++ R+ W +R L+ GRL+L NSVL SI +++M LP+ + I++ + +W G
Sbjct: 514 IRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPE 573
Query: 60 TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWV-----SLLS 114
N V+W +I PK GGL +++ REAN KL+W ++ + LWV +LL
Sbjct: 574 LNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLK 633
Query: 115 NK---YTGGHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSG-SSSFWFSNWNSLS 170
+ G H+TL S W +++ + + K + +G ++SFWF NW+
Sbjct: 634 KESFWSIGTHSTL-------GSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKG 686
Query: 171 PIGNYVPVIDVHDLQLSVRDVLSAPGNHARVL--YTNLPPDVENHINNIHTQFNDNIEDA 228
P+ N D+ +S L+ + R + + E + + N +EDA
Sbjct: 687 PLINLTGARGAIDMGISRHMTLAEAWSRRRRKRHRVEILNEFEEILLQKYQHRNIELEDA 746
Query: 229 LIWSQNKN---GTYTTKSGFNWLITSRVPAIEPILHAW-SWIWRLKVPEKYKFLIWLACQ 284
++W ++ ++TK +N + TS AW +W K+ F WLA +
Sbjct: 747 ILWRGKEDVFKARFSTKDTWNHIRTSSNQ------RAWHKGVWFAHATPKFSFCAWLAIR 800
Query: 285 NAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI 331
N + T + + C C ET H CC+S +IW I
Sbjct: 801 NRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSI 847
>At1g23990 reverse transcriptase, putative
Length = 657
Score = 128 bits (321), Expect = 1e-29
Identities = 101/390 (25%), Positives = 167/390 (41%), Gaps = 41/390 (10%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRG-T 59
++ ++ +W R L+ GRL L SVL SI ++++ LP+ ID+ F+W G
Sbjct: 242 IKKKIGTWTTRYLSYAGRLNLITSVLWSICNFWLAAFRLPRECIREIDKICSAFLWSGPD 301
Query: 60 TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
N V W + PK GGL +R+ +E N KL+W +V +N LWV + +Y
Sbjct: 302 LNPRKTRVCWGDVCKPKQEGGLGLRSLKEMNEVSCLKLIWRIVSHTNSLWVRWI-EQYLL 360
Query: 120 GHNTLYA--SANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYV 176
H+T ++ + N S W +++ ++I K + +G +FW+ NW++L + + V
Sbjct: 361 KHDTFWSVQTTTNMGSWMWRKLLKYRDIAKQFCKVEVKNGKRVAFWYENWSNLGVLNDLV 420
Query: 177 PVIDVHDLQLSVRDVLS---APGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQ 233
DL ++ LS A R L + IE+A++ +
Sbjct: 421 GDRGRIDLGITSHMTLSDAWASRQQRRHRSATL----------------NQIEEAIMLGR 464
Query: 234 NKN--GTYTTKSGFNWLITSRVPAIEPILHAWSW-IWRLKVPEKYKFLIWLACQNAVPTL 290
N ++T+ +N + P W IW K+ F WLA QN + T
Sbjct: 465 NDEYMPKFSTRDTWNQTRNTSTPV------TWHMGIWFAHATPKFSFCAWLAVQNRLSTG 518
Query: 291 SLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQ-------KIGFTSN-DFVTTA 342
+ + SP C C ET H CC++ +IW+ K F++N + T+
Sbjct: 519 DKMLQWNRRLSPTCVLCNNNIETRNHLFFSCCYTAEIWENLAKNIYKAKFSTNWSTILTS 578
Query: 343 TTYDWIKLGISGSRSSIFLAGLWWVWRHRN 372
+ W S IF A + +W RN
Sbjct: 579 VSTTWRNRTESFLARYIFQATIHTIWHERN 608
>At1g47850 hypothetical protein
Length = 799
Score = 126 bits (317), Expect = 3e-29
Identities = 103/394 (26%), Positives = 173/394 (43%), Gaps = 33/394 (8%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRG-T 59
++++++SW R L+ GRL L NSV+ S+ +++M LP I++ F+W G
Sbjct: 366 VRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPE 425
Query: 60 TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
N + W + K GGL I++ EAN KL+W +V + LWV+ +
Sbjct: 426 LNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYII- 484
Query: 120 GHNTLYASANNRSSP---TWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLS---PI 172
+ SAN+RSS W +++ +++ K I SGSS SFW+ NW+ L +
Sbjct: 485 -RKGSFWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEIKSGSSTSFWYDNWSQLGQLVDV 543
Query: 173 GNYVPVIDVH-DLQLSVRDVLSA--PGNHARVLYTNLPPDVENHINNIHTQFNDNIEDAL 229
N ID+ L +V VL++ +H +Y +E I +I + D
Sbjct: 544 TNARRTIDMGIPLAATVATVLASHRTKHHRTAIYNK----IEAEIQSILQRERSGAPDIF 599
Query: 230 IWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPT 289
+W +G +S + + I + +W KY FL+WLA + + T
Sbjct: 600 LW--RSSGDNFRQSFITKVTWHNIRVIHTHRQWYKGVWFSYNTPKYSFLLWLAIHDRLST 657
Query: 290 LSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYDWIK 349
+ + C CG +E+ H C ++ IW + + ++ + DW +
Sbjct: 658 GDRIKKWNSGQQVNCVLCGNVEESRNHLFFSCHYTTAIWDNL---TRRLLSHEYSTDWDR 714
Query: 350 L-----GISGSRSSIFL------AGLWWVWRHRN 372
L + S+ S+FL A L+ VWR RN
Sbjct: 715 LLALLCSSTMSKDSLFLFRYVFQASLYHVWRERN 748
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 121 bits (303), Expect = 1e-27
Identities = 85/313 (27%), Positives = 147/313 (46%), Gaps = 25/313 (7%)
Query: 1 MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
+ +RL+ WK+R L+ GR+TL +VL SIP + M + LP ++ + +D+ +RNF+W T
Sbjct: 570 VSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTV 629
Query: 61 NKGI-HLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKY-- 117
K HL++WKK+ PK GGL +RA+++ N +LL K+ W ++ LW +L KY
Sbjct: 630 EKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYKV 689
Query: 118 TGGHNTLYASANNRSSPTWSSIIRAKNILKDGYTWR-IGSGSSSFWFSNWNSLSPIGNYV 176
T H++ + TWSS TWR IG G W P+
Sbjct: 690 TDVHDSSWLVPK----ATWSS------------TWRSIGVGLREGVAKGWILHEPLCTRA 733
Query: 177 P-VIDVHDLQLSVRDVLSAPGNHARV-LYTNLPPDVENHINNIHTQFNDNIEDALIWSQN 234
++ +L V + + V L LP V + ++ + + + D + W
Sbjct: 734 TCLLSPEELNARVEEFWTEGVGWDMVKLGQCLPRSVTDRLHAVVIKGVLGLRDRISWQGT 793
Query: 235 KNGTYTTKSGFNWLITSRVPAIEPILHAW-SWIWRLKVPEKYKFLIWLACQNAVPTLSLL 293
+G +T S + ++ ++ +P + ++ IW + PE+ + +WL Q + T
Sbjct: 794 SDGDFTVGSAY--VLLTQEEESKPCMESFFKRIWGVIAPERVRVFLWLVGQQVIMTNVER 851
Query: 294 YHRSMAPSPICTR 306
R + +C R
Sbjct: 852 VRRHIGDIEVCQR 864
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.135 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,291,010
Number of Sequences: 26719
Number of extensions: 642567
Number of successful extensions: 1783
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 159
length of query: 581
length of database: 11,318,596
effective HSP length: 105
effective length of query: 476
effective length of database: 8,513,101
effective search space: 4052236076
effective search space used: 4052236076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC135319.4