BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135319.3 + phase: 0 
         (41 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g06035 unknown protein                                              27  2.6
At5g19230 unknown protein                                              25  10.0

>At3g06035 unknown protein
          Length = 200

 Score = 26.6 bits (57), Expect = 2.6
 Identities = 18/44 (40%), Positives = 27/44 (60%), Gaps = 4/44 (9%)

Query: 1   MVLVLTTNTTTGTFSAAT-TSLHAN---FVLMVLLLVVIINYFS 40
           +V+VLTTNT  G++S AT T   +N   F + ++  +VI  Y S
Sbjct: 151 IVVVLTTNTPEGSYSTATPTKQESNGFTFGIGLVSYLVIFMYSS 194


>At5g19230 unknown protein
          Length = 189

 Score = 24.6 bits (52), Expect = 10.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 1   MVLVLTTNTTTGTFSAATTS 20
           +V++LTTNT  G +S  TT+
Sbjct: 143 VVVILTTNTPEGGYSLLTTT 162


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.329    0.134    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,559
Number of Sequences: 26719
Number of extensions: 9775
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 2
length of query: 41
length of database: 11,318,596
effective HSP length: 17
effective length of query: 24
effective length of database: 10,864,373
effective search space: 260744952
effective search space used: 260744952
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)