BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135234.5 - phase: 0 /pseudo
         (256 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g28530 far-red impaired response protein (FAR1) - like              35  0.039
At3g58350 putative protein                                             30  1.3
At1g70820 phosphoglucomutase precursor like protein                    30  1.7
At2g27170 putative chromosome associated protein                       29  2.8
At1g01950 unknown protein                                              28  3.7
At5g17930 unknown protein                                              28  4.8
At5g43880 unknown protein                                              28  6.3
At5g17940 putative protein                                             27  8.2
At2g10140 putative protein                                             27  8.2

>At5g28530 far-red impaired response protein (FAR1) - like
          Length = 700

 Score = 35.0 bits (79), Expect = 0.039
 Identities = 34/142 (23%), Positives = 67/142 (46%), Gaps = 29/142 (20%)

Query: 92  KAGFGVCIDKSVLKRPYLTTQSERSGIYKPP---------KTRKKPNLEGIG---SMKCN 139
           K+GF +        R   +T+S+  G+Y+           + RKK N+E      S++C 
Sbjct: 92  KSGFSI--------RKARSTESQNLGVYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCG 143

Query: 140 CPFRLKGFFDKDTND----WWLAILCGMHNHDLEEKLQGHLIAG--RLSAEEKKKVIDMT 193
           C  +L  +  K+  D    W+++    +HNH+L E  Q  L+    ++   ++++++ ++
Sbjct: 144 CDGKL--YLTKEVVDGVSHWYVSQFSNVHNHELLEDDQVRLLPAYRKIQQSDQERILLLS 201

Query: 194 KSLTVPRNILTNLKENNKESVT 215
           K+   P N +  L E  K  V+
Sbjct: 202 KA-GFPVNRIVKLLELEKGVVS 222


>At3g58350 putative protein
          Length = 355

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 17/61 (27%), Positives = 31/61 (49%), Gaps = 2/61 (3%)

Query: 144 LKGFFDKDTNDWWLAILCGMHNHDLEEKLQGHLIAGRLSAEEKKKVIDMTKSLTVPRNIL 203
           L+ +FD+ T +W L+ +C +  +++  K  G L+ G L    + KV++    L V     
Sbjct: 147 LEQWFDEKTTNWGLSSMCPL--NEIHAKDSGFLLNGELKIVVEIKVLETIGKLDVTEETS 204

Query: 204 T 204
           T
Sbjct: 205 T 205


>At1g70820 phosphoglucomutase precursor like protein
          Length = 615

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 86  VRRQGVKAGFGVCIDKSVLKRPYLTTQSERSGIYKPPKTRKKPNLEGIGSMKCNCPF-RL 144
           +R  G   G G  I+   L+ P L     R  I   P+  K   +E I + +      +L
Sbjct: 453 MRLAGSNEGIGSLIED--LEEP-LEAVELRLNILSEPRDAKAKGIEAIETFRQYIEEGKL 509

Query: 145 KGFFDKDTNDWWLAILCGMHNHDLEEKLQGHLIAGRLSAEEKKKV---IDMTKSLTVPRN 201
           KG+      D W+   C + ++D    +  H+   R+S EE  +    + M +S+  P N
Sbjct: 510 KGWELGTCGDCWVTEGCLVDSNDHPSAIDAHMYRARVSDEESGEEYGWVHMRQSIHNP-N 568

Query: 202 ILTNLK 207
           I  N++
Sbjct: 569 IALNMQ 574


>At2g27170 putative chromosome associated protein
          Length = 1163

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 166 HDLEEKLQGHLIAGRLSAEEKKKVID-MTKSLTVPRNILTNLKENNKESVTTIKQVYNVR 224
           HD  EKL+   +A   ++EE  K+ D + K+    +++  +LKE  KE  T  K+   V 
Sbjct: 233 HDAREKLEQVEVARTKASEESTKMYDRVEKAQDDSKSLDESLKELTKELQTLYKEKETVE 292

Query: 225 TRWCK 229
            +  K
Sbjct: 293 AQQTK 297


>At1g01950 unknown protein
          Length = 893

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 23/90 (25%), Positives = 45/90 (49%), Gaps = 8/90 (8%)

Query: 161 CGMHNHDLEEKLQGHLIAGRLSAEEKKKVIDMTKSLTVP-----RNILTN---LKENNKE 212
           C M   +  +KL+  LI+ + + E  K+  ++   +T       +  L N   L+++ +E
Sbjct: 468 CQMEYMESVKKLEEKLISNQRNHENGKRNGEVNGVVTASEFTRLKESLENEMKLRKSAEE 527

Query: 213 SVTTIKQVYNVRTRWCKGERGDMTELQFLI 242
            V+ +K    ++TR  +GE   +T LQ L+
Sbjct: 528 EVSKVKSQSTLKTRSGEGEDAGITRLQKLL 557


>At5g17930 unknown protein
          Length = 707

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 166 HDLEEKLQGHLIAGRLSAEEKKKVIDMTKSLTVPRNILTNLKENNKESVTT-IKQVYNVR 224
           H+ + +     +A  L ++ K +  ++TK  T  + +L  + E+N E++T  +  +Y  R
Sbjct: 252 HERKPESSSKYVAPHLRSQAKSESEELTKMRTRIKGLLNKMAESNVETITAELATIY--R 309

Query: 225 TRWCKGERGDMTELQFLISKL 245
             + K +   +  +  L+S L
Sbjct: 310 DEYQKEDSLSLNGISLLLSYL 330


>At5g43880 unknown protein
          Length = 836

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 88  RQGVKAGFGVCIDKSVLKRPYLTTQSERSGIYKPPKTRKKPNLEGIGSMKCNCPFRLKGF 147
           R G K+G G+   K  ++  Y T QS R  + KP          G  +   +CP   +GF
Sbjct: 246 RDGSKSGKGLDFFKWPVEEEYPTKQSTRIVVLKP---------NGQVTKASSCPTSPRGF 296

Query: 148 FDKDTND 154
             +++ D
Sbjct: 297 EGRESRD 303


>At5g17940 putative protein
          Length = 427

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 12/50 (24%), Positives = 27/50 (54%)

Query: 166 HDLEEKLQGHLIAGRLSAEEKKKVIDMTKSLTVPRNILTNLKENNKESVT 215
           H+ + +     +A  L ++ K +  ++TK  T  + +L  + E+N E++T
Sbjct: 272 HERKPESSSKYVAPHLRSQAKSESEELTKMRTRIKGLLNKMAESNVETIT 321


>At2g10140 putative protein
          Length = 663

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 11/27 (40%), Positives = 15/27 (54%)

Query: 74  ARWREREELLTWVRRQGVKAGFGVCID 100
           A WR  +EL TW  ++      G+CID
Sbjct: 269 AEWRYFQELHTWFAKEPRNVYLGLCID 295


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,093,226
Number of Sequences: 26719
Number of extensions: 262467
Number of successful extensions: 683
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 9
length of query: 256
length of database: 11,318,596
effective HSP length: 97
effective length of query: 159
effective length of database: 8,726,853
effective search space: 1387569627
effective search space used: 1387569627
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)