BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135234.2 - phase: 0 /pseudo
(1380 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g10780 pseudogene 130 4e-30
At4g16910 retrotransposon like protein 127 4e-29
At4g03840 putative transposon protein 123 8e-28
At3g31970 hypothetical protein 118 3e-26
At2g14650 putative retroelement pol polyprotein 115 2e-25
At2g04670 putative retroelement pol polyprotein 111 3e-24
At4g10580 putative reverse-transcriptase -like protein 110 6e-24
At2g07660 putative retroelement pol polyprotein 108 2e-23
At3g29490 hypothetical protein 100 8e-21
At2g06470 putative retroelement pol polyprotein 95 3e-19
At3g11970 hypothetical protein 87 5e-17
At1g36590 hypothetical protein 87 5e-17
At1g36120 putative reverse transcriptase gb|AAD22339.1 84 6e-16
At4g07830 putative reverse transcriptase 73 1e-12
At2g14640 putative retroelement pol polyprotein 65 3e-10
At2g05610 putative retroelement pol polyprotein 63 1e-09
At3g31480 hypothetical protein 45 2e-04
At1g35370 hypothetical protein 43 0.001
At2g07700 putative retroelement pol polyprotein 34 0.51
At1g42190 hypothetical protein 34 0.67
>At2g10780 pseudogene
Length = 1611
Score = 130 bits (328), Expect = 4e-30
Identities = 62/137 (45%), Positives = 88/137 (63%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V+L+ G GR KKL+P+++GPY++ ERVG VAY++ LPP L+ H+VFHVS
Sbjct: 1446 GDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVS 1505
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGES 1353
QLRK + D + +++N+TVE P+RI DR K RGK L++V+W E
Sbjct: 1506 QLRKCLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMTKGTRGKARDLLKVLWNCRGREE 1565
Query: 1354 LTWELESKMRESYPELF 1370
TWE E+KM+ ++PE F
Sbjct: 1566 YTWETENKMKANFPEWF 1582
>At4g16910 retrotransposon like protein
Length = 687
Score = 127 bits (319), Expect = 4e-29
Identities = 59/137 (43%), Positives = 87/137 (63%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V+L+ G GR KKL P+++GPY++ ERVG VAY++ LPP L H+VFHVS
Sbjct: 530 GDLVYLKAMTYKGAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVS 589
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGES 1353
QLRK + + + +++N+TVE P+RI D+ K RGK + L++++W E
Sbjct: 590 QLRKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKILWNCGGREE 649
Query: 1354 LTWELESKMRESYPELF 1370
TWE E+KM+ ++PE F
Sbjct: 650 YTWETETKMKANFPEWF 666
>At4g03840 putative transposon protein
Length = 973
Score = 123 bits (308), Expect = 8e-28
Identities = 58/136 (42%), Positives = 86/136 (62%)
Query: 1235 DHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQ 1294
D V+L+ G GR KKL+P+++GPY++ ERVG VAY++ LPP L+ H+VFHVSQ
Sbjct: 809 DLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQ 868
Query: 1295 LRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESL 1354
LRK + + + +++N+TVE P++I DR K RGK L++V+W E
Sbjct: 869 LRKCLSNQEESVEDVPPGLKENMTVEAWPVQIMDRMTKGTRGKSRDLLKVLWNCGGREQY 928
Query: 1355 TWELESKMRESYPELF 1370
TWE E+KM+ ++ E F
Sbjct: 929 TWETENKMKANFSEWF 944
>At3g31970 hypothetical protein
Length = 1329
Score = 118 bits (295), Expect = 3e-26
Identities = 60/139 (43%), Positives = 92/139 (66%), Gaps = 4/139 (2%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V+L++ + G R++ KLTP+++GP++I ERVG VAYR+ LP + H VFHVS
Sbjct: 1187 GDRVYLKMAMLRGPNRSISETKLTPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVS 1246
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWG--GATG 1351
LRK + V+ K ++ N+T+E P+RI +R++K LR K+IPL++V+W G T
Sbjct: 1247 MLRKCLHKDDEVLAKILEDLQPNMTLEARPVRILERRIKELRRKKIPLIKVLWNCDGVTE 1306
Query: 1352 ESLTWELESKMRESYPELF 1370
E TWE E++M+ S+ + F
Sbjct: 1307 E--TWEPEARMKASFKKWF 1323
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 115 bits (287), Expect = 2e-25
Identities = 57/139 (41%), Positives = 91/139 (65%), Gaps = 4/139 (2%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V+L++ + G R++ KL+P+++GP++I ERVG VAYR+ LP + H VFHVS
Sbjct: 1189 GDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVS 1248
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVW--GGATG 1351
LRK + V+ K ++ N+T+E P+R+ +R++K LR K+IPL++V+W G T
Sbjct: 1249 MLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCDGVTK 1308
Query: 1352 ESLTWELESKMRESYPELF 1370
E TWE E++M+ + + F
Sbjct: 1309 E--TWEPEARMKARFKKWF 1325
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 111 bits (278), Expect = 3e-24
Identities = 56/139 (40%), Positives = 90/139 (64%), Gaps = 4/139 (2%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V+L++ + G R++ KL+P+++GP++I ERVG VAYR+ LP + H VFHV
Sbjct: 1269 GDRVYLKMAMLRGPNRSILETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVL 1328
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVW--GGATG 1351
LRK + V+ K ++ N+T+E P+R+ +R++K LR K+IPL++V+W G T
Sbjct: 1329 MLRKCLHKDDEVLVKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCDGVTE 1388
Query: 1352 ESLTWELESKMRESYPELF 1370
E TWE E++M+ + + F
Sbjct: 1389 E--TWEPEARMKARFKKWF 1405
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 110 bits (275), Expect = 6e-24
Identities = 55/139 (39%), Positives = 89/139 (63%), Gaps = 4/139 (2%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V+L++ + G R++ KL+P+++GP++I ERV VAYR+ LP + H VFHVS
Sbjct: 1098 GDRVYLKMAMLRGPNRSISETKLSPRYMGPFKIVERVEPVAYRLELPDVMRAFHKVFHVS 1157
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVW--GGATG 1351
LRK + + K ++ N+T+E P+R+ +R++K LR K+IPL++V+W G T
Sbjct: 1158 MLRKCLHKDDEALAKIPEDLQPNMTLEARPVRVLERRIKELRQKKIPLIKVLWDCDGVTE 1217
Query: 1352 ESLTWELESKMRESYPELF 1370
E TWE E++M+ + + F
Sbjct: 1218 E--TWEPEARMKARFKKWF 1234
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 108 bits (271), Expect = 2e-23
Identities = 52/112 (46%), Positives = 74/112 (65%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V+L+ G GR KKL+P+++GPY++ ERVG VAY++ LPP L+ H+VFHVS
Sbjct: 838 GDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNVFHNVFHVS 897
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVV 1345
QLRKY+ D + +++N+TVE P+RI DR K RGK L++V+
Sbjct: 898 QLRKYLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMSKGTRGKSRDLLKVL 949
>At3g29490 hypothetical protein
Length = 438
Score = 100 bits (248), Expect = 8e-21
Identities = 51/139 (36%), Positives = 87/139 (61%), Gaps = 4/139 (2%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V+L++ + G R++ KL+ +++GP++I ERVG VAY + LP + H VFHVS
Sbjct: 199 GDRVYLKMAMLRGPNRSISETKLSLRYMGPFRIVERVGPVAYMLELPDVMRAFHKVFHVS 258
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVW--GGATG 1351
LRK + V+ K ++ N+T+E +R+ +R++K L+ K+I L++V+W G T
Sbjct: 259 MLRKCLHKDDEVLAKIPEDLQPNMTLEARQVRVLERRIKELQRKKISLIKVLWDCDGVTE 318
Query: 1352 ESLTWELESKMRESYPELF 1370
E TW+ E++M+ + + F
Sbjct: 319 E--TWQPEARMKARFKKWF 335
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 94.7 bits (234), Expect = 3e-19
Identities = 44/95 (46%), Positives = 63/95 (66%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
GD V+L+ G GR KKL+P+++GPY++ ERVG VAY++ LPP L+ H+VFHVS
Sbjct: 805 GDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVS 864
Query: 1294 QLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDD 1328
QLRK + D + +++N+TVE P+RI D
Sbjct: 865 QLRKCLSDQEESVEDVPPGLKENMTVEAWPVRIMD 899
>At3g11970 hypothetical protein
Length = 1499
Score = 87.4 bits (215), Expect = 5e-17
Identities = 48/136 (35%), Positives = 83/136 (60%), Gaps = 5/136 (3%)
Query: 1234 GDHVFLRVTPMTGVGRALKS-KKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
GD+V++++ P +++ +KL+PK+ GPY+I +R G VAY++ LP + S +H VFHV
Sbjct: 1365 GDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPSY-SQVHPVFHV 1423
Query: 1293 SQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGE 1352
SQL+ V + S +H V ++D E +P ++ +RK+ + +GK + V V W E
Sbjct: 1424 SQLKVLVGNVSTTVHLPSV-MQD--VFEKVPEKVVERKMVNRQGKAVTKVLVKWSNEPLE 1480
Query: 1353 SLTWELESKMRESYPE 1368
TWE +++++PE
Sbjct: 1481 EATWEFLFDLQKTFPE 1496
>At1g36590 hypothetical protein
Length = 1499
Score = 87.4 bits (215), Expect = 5e-17
Identities = 48/136 (35%), Positives = 83/136 (60%), Gaps = 5/136 (3%)
Query: 1234 GDHVFLRVTPMTGVGRALKS-KKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
GD+V++++ P +++ +KL+PK+ GPY+I +R G VAY++ LP + S +H VFHV
Sbjct: 1365 GDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPSY-SQVHPVFHV 1423
Query: 1293 SQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGE 1352
SQL+ V + S +H V ++D E +P ++ +RK+ + +GK + V V W E
Sbjct: 1424 SQLKVLVGNVSTTVHLPSV-MQD--VFEKVPEKVVERKMVNRQGKAVTKVLVKWSNEPLE 1480
Query: 1353 SLTWELESKMRESYPE 1368
TWE +++++PE
Sbjct: 1481 EATWEFLFDLQKTFPE 1496
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 84.0 bits (206), Expect = 6e-16
Identities = 43/108 (39%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Query: 1265 QISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVPDPSHVIHKGDVQVRDNLTVETLPL 1324
+I ERVG VAYR+ LP + H+VFHVS LRK + V+ K ++ N+T+E P+
Sbjct: 1124 EIVERVGPVAYRLELPDVMRAFHNVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPV 1183
Query: 1325 RIDDRKVKSLRGKEIPLVRVVW--GGATGESLTWELESKMRESYPELF 1370
R+ +R++K +R K+IP+++V+W G T E TWE E++++ + + F
Sbjct: 1184 RVLERRIKEVRRKKIPMIKVLWDCDGVTEE--TWEPEARIKARFKKWF 1229
>At4g07830 putative reverse transcriptase
Length = 611
Score = 73.2 bits (178), Expect = 1e-12
Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 1268 ERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRID 1327
+RVG VA+R+ L + H VFHVS LRK + V+ K ++ N+T+E P+R+
Sbjct: 467 QRVGPVAFRLELSDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVL 526
Query: 1328 DRKVKSLRGKEIPLVRVV--WGGATGESLTWELESKMRESYPELF 1370
+R++K LR K+IPL++V+ G T E TWE E++++ + + F
Sbjct: 527 ERRIKELRRKKIPLIKVLRNCDGVTEE--TWEPEARLKARFKKWF 569
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 65.1 bits (157), Expect = 3e-10
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 1234 GDHVFLRVTPMTGVGRALKS-KKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
GD V LR+ P +S +KL+ +F GP+Q++ + G VAYR+ LP + +H VFHV
Sbjct: 801 GDWVLLRIQPYRQKTLFRRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEG-TRIHPVFHV 859
Query: 1293 SQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGE 1352
S L+ +V D + + +R+N ++ P + + + +S K + + V W G E
Sbjct: 860 SLLKPWVGDGEPDMGQLP-PLRNNGELKLQPTAVLEVRWRSQDKKRVADLLVQWEGLHIE 918
Query: 1353 SLTWELESKMRESYPE 1368
TWE ++ S+PE
Sbjct: 919 DATWEEYDQLAASFPE 934
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 63.2 bits (152), Expect = 1e-09
Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 5/88 (5%)
Query: 1234 GDHVFLRVTPMTGVGRALKS-KKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
GD+VF+++ P ++S +KL+PK+ GPY++ +R G VAY++ LP + S +H VFHV
Sbjct: 693 GDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPAN-SQVHPVFHV 751
Query: 1293 SQLRKY---VPDPSHVIHKGDVQVRDNL 1317
SQLR V +H++ + +R+NL
Sbjct: 752 SQLRVLVGTVTTSTHLLRCYLMSLRENL 779
>At3g31480 hypothetical protein
Length = 338
Score = 45.4 bits (106), Expect = 2e-04
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYR 1276
GD V+L++ + R + KL+PK++GP++I ERVG VAYR
Sbjct: 166 GDRVYLKMDMLQSPKRFILETKLSPKYMGPFRIVERVGPVAYR 208
>At1g35370 hypothetical protein
Length = 1447
Score = 43.1 bits (100), Expect = 0.001
Identities = 34/125 (27%), Positives = 55/125 (43%), Gaps = 28/125 (22%)
Query: 1234 GDHVFLRVTPMTGVGRALK-SKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
GD V++++ P L+ ++KL+PK+ GPY+I E+ G V + +V
Sbjct: 1336 GDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCGEVM-----------VGNVTTS 1384
Query: 1293 SQLRKYVPDPSHVIHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGE 1352
+QL +PD E P I +RK+ +G+ +V V W G E
Sbjct: 1385 TQLPSVLPD----------------IFEKAPEYILERKLVKRQGRAATMVLVKWIGEPVE 1428
Query: 1353 SLTWE 1357
TW+
Sbjct: 1429 EATWK 1433
>At2g07700 putative retroelement pol polyprotein
Length = 543
Score = 34.3 bits (77), Expect = 0.51
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 1312 QVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYP 1367
+++ NLT PL I +R+++ + + IP V+V+W T +L LE + R P
Sbjct: 193 ELKTNLTYPEGPLEIGERRIRKFKKRLIPQVQVIWENKTDGNL---LEVRSRPKGP 245
>At1g42190 hypothetical protein
Length = 64
Score = 33.9 bits (76), Expect = 0.67
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1275 YRVGLPPHLSNLHDVFHVSQLRKYVPDPSHVIHKGDVQVRDNLTV 1319
Y++ LP + H VFHVS LRK + +VI + + +N+ +
Sbjct: 2 YKLDLPTLMDAFHKVFHVSMLRKCITHQENVISEPPPDLLENMMI 46
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.369 0.167 0.626
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,659,739
Number of Sequences: 26719
Number of extensions: 823755
Number of successful extensions: 3656
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3624
Number of HSP's gapped (non-prelim): 26
length of query: 1380
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1268
effective length of database: 8,326,068
effective search space: 10557454224
effective search space used: 10557454224
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 66 (30.0 bits)
Medicago: description of AC135234.2