BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135233.1 + phase: 0 
         (87 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g49320 unknown protein                                             141  6e-35
At5g41970 GAMM1 protein-like                                          139  2e-34
At1g60470                                                              27  2.3
At3g22590 unknown protein                                              25  5.2
At2g46240 hypothetical protein                                         25  5.2
At4g34060 hypothetical protein                                         25  6.8

>At3g49320 unknown protein
          Length = 354

 Score =  141 bits (355), Expect = 6e-35
 Identities = 66/85 (77%), Positives = 76/85 (88%)

Query: 1   MKIDPPIKYVLYEDERSKQWRVQAVSVSPDRFESRKALPSQWRGLRDDILSKESGIPGCV 60
           MKIDPPIKYVLY+D+RS+ WR+QAVSVSP+RFESRKALP  WRGL  + LS+ES IP CV
Sbjct: 268 MKIDPPIKYVLYQDDRSENWRIQAVSVSPERFESRKALPLAWRGLEKEKLSEESSIPRCV 327

Query: 61  FVHMSGFIGGNQTFEGALAMAKAAL 85
           FVHMSGFIG NQT+EGALAMA+A+L
Sbjct: 328 FVHMSGFIGANQTYEGALAMARASL 352


>At5g41970 GAMM1 protein-like
          Length = 346

 Score =  139 bits (351), Expect = 2e-34
 Identities = 63/87 (72%), Positives = 79/87 (90%)

Query: 1   MKIDPPIKYVLYEDERSKQWRVQAVSVSPDRFESRKALPSQWRGLRDDILSKESGIPGCV 60
           MKI+P IKYV+Y+DER+KQWRVQAV+V+PDRFE+RK LP +WRGLRD+ LSK + IPGCV
Sbjct: 260 MKIEPLIKYVIYQDERAKQWRVQAVAVAPDRFENRKPLPEKWRGLRDEELSKAAEIPGCV 319

Query: 61  FVHMSGFIGGNQTFEGALAMAKAALKM 87
           FVHMSGFIGGNQ+++GAL+MA+ AL +
Sbjct: 320 FVHMSGFIGGNQSYDGALSMAQTALTL 346


>At1g60470 
          Length = 334

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 15/51 (29%), Positives = 22/51 (42%)

Query: 7   IKYVLYEDERSKQWRVQAVSVSPDRFESRKALPSQWRGLRDDILSKESGIP 57
           +K V Y    SK WR      + DR + +  +   W    D+ L  +S IP
Sbjct: 254 VKVVHYCAAGSKPWRYTGEEANMDREDIKMLVDKWWDVYNDESLDFKSKIP 304


>At3g22590 unknown protein
          Length = 415

 Score = 25.4 bits (54), Expect = 5.2
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 18  KQWRVQAVSVSPD-RFESRKALPSQWRGLRDDILSK 52
           KQW V+ +S+S + R + R A    W  L + + S+
Sbjct: 377 KQWNVKIISISKNKRHQDRAAALEVWEKLEEFVRSR 412


>At2g46240 hypothetical protein
          Length = 1043

 Score = 25.4 bits (54), Expect = 5.2
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 10/49 (20%)

Query: 6   PIKYVLYEDERSKQWRVQ----------AVSVSPDRFESRKALPSQWRG 44
           PI ++ +E+ R++++R            A   +PD    +K+ P  WRG
Sbjct: 151 PIIWIPHENARNQEYRSSLGLGKHNQPPAEVRAPDNMTIQKSFPESWRG 199


>At4g34060 hypothetical protein
          Length = 917

 Score = 25.0 bits (53), Expect = 6.8
 Identities = 15/63 (23%), Positives = 30/63 (46%), Gaps = 5/63 (7%)

Query: 13  EDERSKQWRVQAVSVSPDRFESRKALPSQWRGLRDDILSKESGIPGCVFVHMSGFIGGNQ 72
           + E  K+W V  V+ SP R    K   ++W+  R+   ++       +F++    + GN+
Sbjct: 422 DPETIKEWDVLMVNDSPSRSYDDKETEAKWKKEREIFQTRID-----LFINRMHRLQGNR 476

Query: 73  TFE 75
            F+
Sbjct: 477 KFK 479


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,995,992
Number of Sequences: 26719
Number of extensions: 70226
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 6
length of query: 87
length of database: 11,318,596
effective HSP length: 63
effective length of query: 24
effective length of database: 9,635,299
effective search space: 231247176
effective search space used: 231247176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)