BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135162.7 + phase: 0 /pseudo
(2175 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 743 0.0
At3g31530 hypothetical protein 461 e-129
At2g15410 putative retroelement pol polyprotein 391 e-108
At2g13330 F14O4.9 379 e-105
At2g14400 putative retroelement pol polyprotein 323 7e-88
At2g14380 putative retroelement pol polyprotein 293 8e-79
At4g03800 274 4e-73
At1g37200 hypothetical protein 273 6e-73
At1g37060 Athila retroelment ORF 1, putative 266 8e-71
At2g15100 putative retroelement pol polyprotein 265 2e-70
At2g10780 pseudogene 263 1e-69
At4g10580 putative reverse-transcriptase -like protein 261 4e-69
At2g04670 putative retroelement pol polyprotein 256 8e-68
At2g07660 putative retroelement pol polyprotein 248 4e-65
At3g11970 hypothetical protein 246 8e-65
At1g36590 hypothetical protein 246 8e-65
At2g14650 putative retroelement pol polyprotein 244 3e-64
At1g35370 hypothetical protein 236 1e-61
At2g14040 putative retroelement pol polyprotein 234 5e-61
At2g10690 putative retroelement pol polyprotein 204 4e-52
>At1g20390 hypothetical protein
Length = 1791
Score = 743 bits (1917), Expect = 0.0
Identities = 423/1086 (38%), Positives = 612/1086 (55%), Gaps = 49/1086 (4%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
L+ FAWS EDM G+DP I H + P PV+QK R+ P+ A + EV+K +
Sbjct: 743 LKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLK 802
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSK 1220
AG ++ V+YPEW+AN V V KK+GK R+CVD+ DLNKA PKD++PLPHID LV+ T+ +
Sbjct: 803 AGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNG 862
Query: 1221 VFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDM 1280
+ SFMD FSGYNQI M +D+EKTSF+T GT+CYKVM FGL NAGATYQR + + D
Sbjct: 863 LLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQ 922
Query: 1281 IHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVS 1340
I + VEVY+DDM+VKS E HVE+L+K F+ L Y ++LNP KCTFGV SG+ LG++V+
Sbjct: 923 IGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVT 982
Query: 1341 QKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPI 1400
++GIE +P ++RAI E+P+P+ ++V+ GR+ ++RFIS T C P + LL++
Sbjct: 983 KRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQF 1042
Query: 1401 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAI 1460
W+ + +EAF+ +K+YL PPILV P G L +Y+AV D ++ VL ++D ++ I
Sbjct: 1043 DWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDR--GEQRPI 1100
Query: 1461 YYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTG 1520
+Y SK + ETRY ++EK A+ + ++LR Y +HT +++ P++ + +G
Sbjct: 1101 FYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTD-QPLRVALHSPSQSG 1159
Query: 1521 KIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCE 1580
++ +W + LSEYDI F+ + A+K +LAD L PL + EE
Sbjct: 1160 RMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEE---------- 1209
Query: 1581 EPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECTNNMAEYEA 1640
W L DG+ +A G GIG +VSP + + R+ F TNN+AEYE
Sbjct: 1210 -------------WSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEV 1256
Query: 1641 CIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLTYFTKVELH 1700
I G+ A M+I + + DS LI Q+ GE+E + + Y + + F +L
Sbjct: 1257 LIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLS 1316
Query: 1701 HIPRDENQMADALATLSSMFRVNHWNDV-PLIKVQRLERPS-----HVFAIGDVIDQAGE 1754
IPR +N ADALA L+ + +D+ +I V+ +++PS V + +
Sbjct: 1317 KIPRGDNAPADALAALA----LTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNAP 1372
Query: 1755 NVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRL---AGRFLLDGNILYKRNYDMVLL 1811
+ D W +I+ +L G DK T RRL A ++ L L K + +L
Sbjct: 1373 DPADPTDWRVEIRDYL-----SDGTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAFGAML 1427
Query: 1812 RCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIY 1871
C+ E ++M + H+G G H+ G ++ KL + G+YW M DC KC +CQ +
Sbjct: 1428 NCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRH 1487
Query: 1872 ADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTN 1931
A IH P L +P+PF W +D++G + AS RFILV DYFTKWVEA SY
Sbjct: 1488 APTIHQPTELLRAGVAPYPFMRWAMDIVGPM--PASRQKRFILVMTDYFTKWVEAESYAT 1545
Query: 1932 VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNG 1991
+ V F+ IICR+G+P +IITDNG+ + + C +KI + S+P PQ NG
Sbjct: 1546 IRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNG 1605
Query: 1992 AVEAANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPL 2050
EA NK I ++K + K W + L L YRTT RS+T TPF+ YGMEA+ P
Sbjct: 1606 QAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPA 1665
Query: 2051 EVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPR 2110
EV SLR M K E + D+L+ +EE R A+ R Q+YQ +++KVH R
Sbjct: 1666 EVGYSSLRRSMMVKNPELN-DRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNR 1724
Query: 2111 EFKVGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVNAD 2169
F VG+LVL++ + GK N+EG Y V K G L M G +P N+
Sbjct: 1725 HFDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSM 1784
Query: 2170 IVKKYF 2175
+K+Y+
Sbjct: 1785 HLKRYY 1790
>At3g31530 hypothetical protein
Length = 831
Score = 461 bits (1186), Expect = e-129
Identities = 287/868 (33%), Positives = 445/868 (51%), Gaps = 126/868 (14%)
Query: 1223 SFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIH 1282
S+ ++ + + M+PED+EKT+F T G FCY+VMPFGL NAGATY+R + +F I
Sbjct: 83 SYCHSWTLFVVMMMNPEDQEKTAFYTEQGIFCYRVMPFGLKNAGATYERFVNKIFALQIG 142
Query: 1283 KEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQK 1342
K +EVY+DDM+VKS E+ H+ +L + F++L Y ++LNP KC FGVRS
Sbjct: 143 KTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYNVKLNPAKCRFGVRS----------- 191
Query: 1343 GIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVW 1402
GIE +P ++ A+ M +PQ +++V+ GR+ ++RFIS T C + +LR+N+ W
Sbjct: 192 GIEANPKQIEALLGMASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRRNKKFEW 251
Query: 1403 NDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYY 1462
C+EAF +K YL PPIL PV G P +Y+AV D ++ L ++D +K I+Y
Sbjct: 252 TTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDRGEQK--LIFY 309
Query: 1463 LSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1522
+S+ FT E+RY +EK A+ + ++LR Y +H+ ++ M P++ I + +G++
Sbjct: 310 VSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHSPSQSGRL 368
Query: 1523 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1582
A+W + LSEYDI ++ + K +LAD + P + + E P
Sbjct: 369 AKWTIELSEYDIEYQNKTCAKSQVLADFIVELPTKEAR-------------------ENP 409
Query: 1583 LINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFECTNNMAEYEACI 1642
L D+ W L DG+ + G G+G + SP G E TNN+AEYEA +
Sbjct: 410 L-------DTTWLLHVDGSSSKQGSGVGIRLTSPTG-----------EATNNVAEYEALV 451
Query: 1643 FGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHI 1702
G+ A ++I + DS LI NQ GE+ T + Y + + L F + EL I
Sbjct: 452 AGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFELTRI 511
Query: 1703 PRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPS-------HVFAIGDVIDQAGEN 1755
PR EN ADALA L+S + +P V+ +E+PS HV I DQ +
Sbjct: 512 PRGENTSADALAALASTSDTSLKRVIP---VEFIEKPSIELGKEEHVLPIQISADQDDPD 568
Query: 1756 VVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGNILYKRNYDMVLLRCVD 1815
+ W I ++ + P + K + L+ A RF+L LYK L+ CV+
Sbjct: 569 DCN-SEWMEPIISYISEGKLP--SDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTCVE 625
Query: 1816 EHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKI 1875
++M ++H G+ +A I
Sbjct: 626 AEAICKIMKEIHSGS----------------------------------------HAPTI 645
Query: 1876 HVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 1935
H P L+ ++SP+PF W +D+IG + P S + +LV DYF+KW+EA SY ++
Sbjct: 646 HQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVLVLTDYFSKWIEAESYASIKDA 703
Query: 1936 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEA 1995
V F+ +I+CR+G+P +I+TDNG+ + Q C+++ I S+P PQ NG EA
Sbjct: 704 QVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGNGQAEA 763
Query: 1996 ANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIP 2055
AN+ L L +RTT R +T TPF+ +YG E V+P E+ +P
Sbjct: 764 ANE-------------------LEGVLWLHRTTPRRATRETPFASIYGTECVIPAEMIVP 804
Query: 2056 SLRVIMEAKLSEAEWCQSRYDQLNLIEE 2083
SLR + + ++ + Q+ D+L+LI+E
Sbjct: 805 SLRRSLSPE-NDPDNTQTPLDELDLIDE 831
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 391 bits (1004), Expect = e-108
Identities = 192/445 (43%), Positives = 286/445 (64%), Gaps = 23/445 (5%)
Query: 1099 NSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQ 1158
N LR+ FAWS EDMPG+D + H + P P++QK R+ PD + EV+K
Sbjct: 746 NFLRQNAATFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKL 805
Query: 1159 IDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQ 1218
+DAG ++ V YP+W+ N V V KK+GK R+C+DF DLNKA PKD+FPLPHID LV+ TA
Sbjct: 806 LDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAG 865
Query: 1219 SKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFH 1278
+++ SFMD FSGYNQI M DREKT FIT GT+CYKVMPFGL NAGATY R + +F
Sbjct: 866 NELLSFMDAFSGYNQILMHQNDREKTVFITDQGTYCYKVMPFGLKNAGATYPRLVNQMFT 925
Query: 1279 DMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFI 1338
D + +EVY+DDM+VKS E+H+ +L + F+ L +Y ++LNP+KCTFGV SG+ LG++
Sbjct: 926 DQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYL 985
Query: 1339 VSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQ 1398
V+++GIE +P ++ AI ++P+P+ ++V+ +GR+ ++RFIS T C P ++LLR N+
Sbjct: 986 VTRRGIEANPKQISAIIDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLPFYQLLRANK 1045
Query: 1399 PIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEH 1458
W+++C+ EG L +Y+AV ++ VL ++D ++H
Sbjct: 1046 RFEWDEKCE--------------------EGETLYLYIAVSTSAVSGVLVREDR--GEQH 1083
Query: 1459 AIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAV 1518
I+Y+SK E RY LEK A+ + ++LR Y ++T +++ P++ I +
Sbjct: 1084 PIFYVSKTLDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEVLTN-QPLRTILHSPSQ 1142
Query: 1519 TGKIARWQMLLSEYDIVFKTQKAIK 1543
+G++A+W + LSEYDI +K + K
Sbjct: 1143 SGRLAKWAVELSEYDIAYKNRTCAK 1167
Score = 312 bits (799), Expect = 2e-84
Identities = 203/608 (33%), Positives = 294/608 (47%), Gaps = 72/608 (11%)
Query: 1629 FECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYAR 1688
F +NN AEYEA I G+ A + +K + Y DS L+ +Q G +E + + Y R
Sbjct: 1190 FPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVR 1249
Query: 1689 RLLTYFTKVELHHIPRDENQMADALATLSSMFRVN-------HWNDVPLIKVQ-RLERPS 1740
L F EL IPR +N ADALA L+S + DVP IK+Q + +PS
Sbjct: 1250 ELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKPS 1309
Query: 1741 HVFAIGDVIDQAGENVVDYRP--------------------------------------- 1761
I +Q +V P
Sbjct: 1310 EYTVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADSD 1369
Query: 1762 ------WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGNILYKRNYDMVLLR 1812
W +I+ ++ R P +DK RRL R + L L + + VLL
Sbjct: 1370 SPASTNWIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLLS 1424
Query: 1813 CVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYA 1872
C+D+ EA+Q+M ++H+G G H+ G ++ K+ + G YW M DC + +C KCQ +A
Sbjct: 1425 CLDDEEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHA 1484
Query: 1873 DKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNV 1932
IH+P L P+PF W +D+I AS ++ILV DYFTKW EA SY +
Sbjct: 1485 PFIHIPSEVLQTAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESYARI 1542
Query: 1933 TKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGA 1992
+ V F+ NIIC +G+P +I+TDNGT + + C ++KI S+P PQ NG
Sbjct: 1543 QSKEVQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQ 1602
Query: 1993 VEAANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2051
EA NK I ++K + K W + L L YRTT R ST TPFSL YGMEA+ P E
Sbjct: 1603 AEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCE 1662
Query: 2052 VEIPSLR---VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVH 2108
+P++R +I + L++ Q D L+ +EE+R A+ R Q+YQ ++KKV
Sbjct: 1663 AGLPTVRRSMLINDPTLND----QMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVK 1718
Query: 2109 PREFKVGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVN 2167
R F G+LVL++ + GK ++EGPY++ K G L MDG +P N
Sbjct: 1719 NRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWN 1778
Query: 2168 ADIVKKYF 2175
+ +K+Y+
Sbjct: 1779 SANLKRYY 1786
>At2g13330 F14O4.9
Length = 889
Score = 379 bits (974), Expect = e-105
Identities = 204/538 (37%), Positives = 303/538 (55%), Gaps = 59/538 (10%)
Query: 1181 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPED 1240
+K+GK R+C+DFRDLNKA PKD+FPLPHID LV+ T + + SFMD F GYNQI M +
Sbjct: 289 EKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDG 348
Query: 1241 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEE 1300
+EKT+FIT GT+ YKVMPFGL NAG TYQR + +F D + K +EVY+DDM+VKSA E+
Sbjct: 349 QEKTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEK 408
Query: 1301 QHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAP 1360
HV L + F+ L K++++LNP KC+F V+S + L ++V+++GIE +P ++ A EMP+P
Sbjct: 409 DHVPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSP 468
Query: 1361 QTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEP 1420
+ ++V+ GR+ ++ FIS C P ++ LRK + WN +C++AF +K YL EP
Sbjct: 469 KMAREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKEFDWNKDCEQAFKQLKAYLTEP 528
Query: 1421 PILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKT 1480
PIL P +G PL +Y T+ + R +EK
Sbjct: 529 PILAKPEKGEPLYLY--------------------------------TNRDKRCPAMEKL 556
Query: 1481 CCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQK 1540
+ + ++LR Y +H ++ PI+ I +G++A+W + L EYDI ++T+
Sbjct: 557 ALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTILHSLTQSGRLAKWAIELREYDIEYRTRT 615
Query: 1541 AIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPDSKWGLVFDG 1600
++K +LAD + PL D +G + + KW L DG
Sbjct: 616 SLKAQVLADFVIKLPLADL--------------------------DGTNSNKKWLLHVDG 649
Query: 1601 AVNAYGKGIGAVIVSPQGHHIPFTTRILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYG 1660
+ N G G+G + SP G I + ++ F +NN +EYEA I GI+ A + I+ + Y
Sbjct: 650 SSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYS 709
Query: 1661 DSALIINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSS 1718
DS L+ +Q GE+E + Y + + L F +L IPR EN AD LA L+S
Sbjct: 710 DSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALAS 767
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 323 bits (828), Expect = 7e-88
Identities = 155/339 (45%), Positives = 236/339 (68%), Gaps = 2/339 (0%)
Query: 1141 RRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASP 1200
R+ + A + +EV K + G + V+YP+W+AN V V KK+GK R+C+DF DLNKA P
Sbjct: 470 RKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACP 529
Query: 1201 KDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPF 1260
KD+FPLPHID LV++TA +++ SFMD FSGYNQI M+PED+EKT FIT G +CYKVMPF
Sbjct: 530 KDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPF 589
Query: 1261 GLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRL 1320
GL NAGATY R + +F + + K +EVY+DDM++KS +E HV++L + F L +Y+++L
Sbjct: 590 GLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKL 649
Query: 1321 NPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFI 1380
NP KCTFGV SG+ LG+IV+++GIE +P+++ A MP+P+ K+V+ GR+ ++RFI
Sbjct: 650 NPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFI 709
Query: 1381 SHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFD 1440
S T P +++L+ N+ +W+++C+EAF +K YL PP+L P L +Y++V +
Sbjct: 710 SRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSN 769
Query: 1441 ESMGCVLGQQDETGKKEHAIYYLSKKFT-DCETRYTMLE 1478
++ VL ++D G+++ Y + +F D E + + +E
Sbjct: 770 HAVSGVLIREDR-GEQKPIYYIIVNQFNGDYEAKDSRME 807
Score = 219 bits (557), Expect = 2e-56
Identities = 162/539 (30%), Positives = 252/539 (46%), Gaps = 82/539 (15%)
Query: 1664 LIINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMF--R 1721
+I+NQ G++E + + Y + L F K EL IPR +N ADALA L+S
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 1722 VNHWNDVPLIKVQRLERPSHVFAIGDVIDQA---GENVVDYRPWYYDIKQFLLSREYPPG 1778
VN V I + ++ F + A G+ V+ P +K+ P
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPP----VKRRKSKEATVPK 905
Query: 1779 ASKQDKKTLRRLAGRFLLDGNI--------------------------LYKRNYDMVLLR 1812
+ Q+ + L + D I LY+R L
Sbjct: 906 PAVQENIGIE-LIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLL 964
Query: 1813 CVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYA 1872
+ E +M +VH+G G+H++G M+ K+ + YYW M DC ++A++C +CQ++A
Sbjct: 965 SIFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHA 1024
Query: 1873 DKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNV 1932
IH P + +S+P+PF W +D+IG + +++ G +++LV DYF+KW+EA +
Sbjct: 1025 PLIHQPSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEAEA---- 1079
Query: 1933 TKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGA 1992
I+ +G+ K+ + S+ PQ NG
Sbjct: 1080 ------------ILLNWGI------------------------KVSY--STLRYPQGNGQ 1101
Query: 1993 VEAANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2051
EAANK I ++K + K W++ L L YRTT R STG TPFSLVYGM+AV+P E
Sbjct: 1102 AEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVPAE 1161
Query: 2052 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPRE 2111
+ +P LR EA L+E E D L+ I E+R A+ + Q+YQ ++ KV R
Sbjct: 1162 LNVPGLR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRP 1220
Query: 2112 FKVGELVLKRRI-SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVNAD 2169
F VG+ VLKR +++ + GK N+EGPY+V + G L ++ + P N +
Sbjct: 1221 FFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWNVN 1279
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 293 bits (750), Expect = 8e-79
Identities = 139/282 (49%), Positives = 197/282 (69%)
Query: 1114 DMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWV 1173
DM G+DP + H + P V+QK R+ P+ + + +EV K +DAG ++ V+YPEW+
Sbjct: 476 DMVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWL 535
Query: 1174 ANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQ 1233
AN V V KK+ K R+C+DF DLNKA PKD+FPLPHID +V+ T +++ SFMD FSGYNQ
Sbjct: 536 ANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQ 595
Query: 1234 IKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMI 1293
I M +D+EKTSFI GT+CYKVMPFGL N GA YQR + +F + K +EVY+DDM+
Sbjct: 596 IPMHKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDML 655
Query: 1294 VKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRA 1353
VKS H+++L FE L KY ++LNP KC FGV SG+ LG+IV+++GIE +P ++RA
Sbjct: 656 VKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRA 715
Query: 1354 IREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLR 1395
I ++ +P+ +K+V+ GR+ ++RFI+ T P ++LLR
Sbjct: 716 ILDLQSPRNKKEVQRLTGRIAGLNRFIARSTDKSLPFYQLLR 757
>At4g03800
Length = 637
Score = 274 bits (701), Expect = 4e-73
Identities = 138/337 (40%), Positives = 214/337 (62%), Gaps = 21/337 (6%)
Query: 1115 MPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVA 1174
MP +DP I+ H + P P++QK R+ + A + ++ K + G + V+YP+WVA
Sbjct: 321 MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380
Query: 1175 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1234
V V KK+GK R+C+DF DLNKA PKD+FPLPHID LV++TA +++ +FMD F GYNQI
Sbjct: 381 ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440
Query: 1235 KMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV 1294
M+PED+EKTSFIT + GATYQ + +F++ + K +EV +DD +V
Sbjct: 441 MMNPEDQEKTSFIT---------------DRGATYQWLVNKMFNEHLRKTMEVSIDDTLV 485
Query: 1295 KSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 1354
KS +E HV++L + FE L +Y+++LN KCTFGV SG+ LG+IV+++GIE +P+++ A
Sbjct: 486 KSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQINAF 545
Query: 1355 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIK 1414
+ P+ + K+V+ GR+ S T P +++L+ N +W+++C+EAF +K
Sbjct: 546 LKTPSLRNFKEVQRLTGRI------ASRSTDKSLPFYQILKGNNGFLWDEKCEEAFRQLK 599
Query: 1415 NYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQD 1451
YL PP+L P L +Y+ V + ++ VL ++D
Sbjct: 600 AYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRED 636
>At1g37200 hypothetical protein
Length = 1564
Score = 273 bits (699), Expect = 6e-73
Identities = 129/261 (49%), Positives = 184/261 (70%), Gaps = 4/261 (1%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
L+E D FAWS ++ G+ + H + P P++QK R+ P+ A +++EV + +
Sbjct: 651 LKENKDSFAWSSANLQGISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLK 710
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSK 1220
G + V+YP+W+AN V V K+GK R+C+DF DLNKA PKD+FPLPHID LV TA +
Sbjct: 711 IGSIREVKYPDWLANPVVVKNKNGKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHE 770
Query: 1221 VFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDM 1280
+ SFMD FSGYNQI M P+D+EKT+FIT CYKVMPFGL N GATYQR + +F D
Sbjct: 771 LLSFMDAFSGYNQILMRPDDQEKTAFITD----CYKVMPFGLKNTGATYQRLVNRMFADQ 826
Query: 1281 IHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVS 1340
+ K +E+Y+DDM+VKSA E+ H+ L + F+ L K++++LNP KC+FGV SG+ LG++V+
Sbjct: 827 LGKTMELYIDDMLVKSAHEKDHLPQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVT 886
Query: 1341 QKGIEVDPDKVRAIREMPAPQ 1361
Q+GIE +P ++ A +MP+P+
Sbjct: 887 QRGIEANPKQIAAFIDMPSPK 907
Score = 242 bits (618), Expect = 2e-63
Identities = 165/555 (29%), Positives = 257/555 (45%), Gaps = 91/555 (16%)
Query: 1451 DETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIK 1510
D G+K IYY+SK D ET Y +EK A+ + ++LR YL +H ++ PI+
Sbjct: 927 DHEGQKP--IYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIR 983
Query: 1511 YIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEE 1570
I + ++A+W + LSEYDI ++T+ + K +LAD + PL D
Sbjct: 984 TILHSTTQSSRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADL----------- 1032
Query: 1571 IMYLKSKDCEEPLINEGPDPDSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTTRILFE 1630
+G + + KW L DG+ N G G G + SP G I + R+ F
Sbjct: 1033 ---------------DGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFN 1077
Query: 1631 CTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALIINQIKGEWETHHANLIPYRDYARRL 1690
+NN +EYEA I GI+ A MRI+ + + DS L+ +Q GE+E + Y + + L
Sbjct: 1078 ASNNESEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTL 1137
Query: 1691 LTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAI----- 1745
F EL IPR EN DALA L+S +P V+ +E PS +
Sbjct: 1138 TQQFESFELTRIPRGENTSTDALAALASTLDPFVKRIIP---VEGIEHPSIDLTVKHAGM 1194
Query: 1746 ----------------------------GDVIDQA----GENVVDYRP-----WYYDIKQ 1768
G ++A E + Y P W I
Sbjct: 1195 ETSATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPIID 1254
Query: 1769 FLLSREYPPGASKQDKKTLRRLAGRFLLDGNILYKRNYDMVLLRCVDEHEAEQLMHDVHD 1828
++ PP K + + L+ + R+ + L KR+ + C + + LM +H+
Sbjct: 1255 YIERGITPP--DKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHE 1312
Query: 1829 GTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSP 1888
G G+H +G T+ +L DC H+ +C KCQ +A +H PP ++ +SSP
Sbjct: 1313 GQCGSHYSGRTLRCIMLA----------DCIAHSLRCDKCQRHAPTLHQPPEEMSSISSP 1362
Query: 1889 WPFSMWGIDMIGRIEPKASNGH---RFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNI 1945
+PF W +D++ +E AS G + +LV DY TKW+E ++ VT++ V F+ NI
Sbjct: 1363 YPFMKWSMDVVRPME--ASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENI 1420
Query: 1946 ICRYGVPSKIITDNG 1960
+ R+G+P +I+TDNG
Sbjct: 1421 VYRHGIPYEIVTDNG 1435
Score = 50.4 bits (119), Expect = 1e-05
Identities = 33/98 (33%), Positives = 52/98 (52%), Gaps = 2/98 (2%)
Query: 2079 NLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPD-PRGKWTPNY 2137
+ I+E+R AM + Q+YQ ++ + R F+VGELVL++ S + GK N+
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524
Query: 2138 EGPYVVKKAFSGGALILTHM-DGIELPNPVNADIVKKY 2174
EGPY + + G L + +G+ P NA +KKY
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 266 bits (681), Expect = 8e-71
Identities = 156/493 (31%), Positives = 250/493 (50%), Gaps = 49/493 (9%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
L +Y +S +D+ G+ P + HRI + E + RR +P++ +K E+ K +D
Sbjct: 865 LMKYRKAIGYSLDDIKGISPTLCTHRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLD 924
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDFRDLNKASPKD 1202
AG + + WV+ + VPKK G RMC+++R LN AS K+
Sbjct: 925 AGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKE 984
Query: 1203 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 1262
+FPLP ID +++ A + F+D +SG+ QI + P D+ KT+F P+GTF YK MPFGL
Sbjct: 985 HFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGL 1044
Query: 1263 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNP 1322
NA AT+QR MT++F D+I + VEV++DD V + + L ++ +R + L LN
Sbjct: 1045 CNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNW 1104
Query: 1323 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 1382
KC F VR G +LG +S++GIEVD K+ + ++ P+T K +R FLG + FI
Sbjct: 1105 EKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKD 1164
Query: 1383 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDES 1442
+ P+ +LL K ++DEC AF IK L+ PI+ P P +
Sbjct: 1165 FSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEII------- 1217
Query: 1443 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWL 1502
D + RY EK A+ +A ++ R YLV +
Sbjct: 1218 -----------------------TMDDAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTI 1254
Query: 1503 ISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPI 1562
+ +++I+ K ++ RW +LL E+D+ +K I+ + ADHL+ ++D I
Sbjct: 1255 YTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGV-ADHLSRMRIEDEVLI 1313
Query: 1563 EFDFPDEEIMYLK 1575
+ P+E++M ++
Sbjct: 1314 DDSMPEEQLMAIQ 1326
Score = 201 bits (510), Expect = 5e-51
Identities = 143/419 (34%), Positives = 207/419 (49%), Gaps = 43/419 (10%)
Query: 1761 PWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGNILYKRNYDMVLLRCVDEHEAE 1820
PWY D +L+S E PP S +KK + F D LY D + CV E E E
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393
Query: 1821 QLMHDVHDGTFGTH-ATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPP 1879
++ H +G H AT TMS K+L+AG++W +M D + KC +
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMS-KILQAGFWWPSMFKDAQEFISKCDSFE---------- 1442
Query: 1880 HALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEA-ASYTNVTKQVVA 1938
F +WGID +G +S G+++ILVAIDY +KWVEA AS+TN +VV
Sbjct: 1443 ----------NFDVWGIDFMGPF--PSSYGNKYILVAIDYVSKWVEAIASHTN-DARVVL 1489
Query: 1939 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1998
K K I R+GVP +I+D G + N + L ++ ++H S G VE +N+
Sbjct: 1490 KLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNR 1541
Query: 1999 NIKRIVQKMV-TTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2057
IK I++K V +T KDW L L YRT ++ G TPF+L+YG LP+E+E ++
Sbjct: 1542 EIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAM 1601
Query: 2058 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGEL 2117
+ + R QLN + + R++A + Y+ R K+ DKK+ R+FKVG+
Sbjct: 1602 WAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQ 1661
Query: 2118 VL--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPVNADIVKKY 2174
VL R+ P GK + GP+ V GA+ L +G VN +KKY
Sbjct: 1662 VLLFNSRLRLFP---GKLKSRWSGPFSVTAVRPYGAITLAGKNG---DFTVNGQRLKKY 1714
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 265 bits (678), Expect = 2e-70
Identities = 179/558 (32%), Positives = 273/558 (48%), Gaps = 68/558 (12%)
Query: 1667 NQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWN 1726
N+ GE+E A + Y + R + F + EL IPR EN A+ALA L+S F V
Sbjct: 790 NRYSGEYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAANALAALASTFEVTLPR 849
Query: 1727 DVPLIKVQ----RLERPSHVFA------------------------IGDVI--------- 1749
+P+ + RL+ S V I D +
Sbjct: 850 VIPVETISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDDEEISDAVHPTEIVENQ 909
Query: 1750 ---DQAGENVVDYRP------WYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGNI 1800
D + D P W I+ ++L+ P A K + L+ RF + +I
Sbjct: 910 SLPDNHNAPLPDQPPHDWGADWREPIRDYILNGTLP--AEKWAARKLKATCARFCIANDI 967
Query: 1801 LYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQ 1860
LY+R + C+ + +M +VHDGT G H G +++ K+ + GYYW + DC
Sbjct: 968 LYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEA 1027
Query: 1861 HARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 1920
+ARKC +CQ +A I P L +S+P+PF W +D++G +
Sbjct: 1028 YARKCEQCQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHVS--------------- 1072
Query: 1921 TKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 1980
T+ VEAA+Y+N+T V FI +IICR+G+P +I+TDNG+ + + CEE++I
Sbjct: 1073 TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLS 1132
Query: 1981 NSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFS 2039
+S+P PQ NG EA NK I ++K + YK W L L RTT R +T TPFS
Sbjct: 1133 HSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFS 1192
Query: 2040 LVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARM 2099
L+YGMEAV+P E+++PS R I + +E E + D ++ I+E+R A+AR Q+Y
Sbjct: 1193 LIYGMEAVIPAEIKVPSARRIRNPQ-NETENNEMIIDVIDTIDERRNRALARMQNYHNAG 1251
Query: 2100 KTAFDKKVHPREFKVGELVLKRRISQQPDPR--GKWTPNYEGPYVVKKAFSGGALILTHM 2157
++ V R F+VG LVL RR+ Q + GK ++EGPY + G L +M
Sbjct: 1252 ARYYNSNVRNRSFEVGTLVL-RRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINM 1310
Query: 2158 DGIELPNPVNADIVKKYF 2175
+G + N+ +K+++
Sbjct: 1311 EGKTVRRAWNSMHLKRFY 1328
Score = 172 bits (435), Expect = 3e-42
Identities = 84/151 (55%), Positives = 106/151 (69%)
Query: 1115 MPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVA 1174
M G+ ++ H + P PV+QK R+ PD A + EV + ++ G + V+YPEW+A
Sbjct: 412 MTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLA 471
Query: 1175 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1234
N V V KK+GK R+CVDF DLNKA KD FPLPHID LV++T ++ SFMD FSGYNQI
Sbjct: 472 NPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQI 531
Query: 1235 KMSPEDREKTSFITPWGTFCYKVMPFGLINA 1265
M+PED+EKTSFIT GT+ YKVMPFGL NA
Sbjct: 532 LMNPEDQEKTSFITECGTYYYKVMPFGLKNA 562
Score = 84.0 bits (206), Expect = 9e-16
Identities = 42/146 (28%), Positives = 83/146 (56%), Gaps = 10/146 (6%)
Query: 1401 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAI 1460
+WN+ C+EAF +K YL EP +L G L +Y+AV + ++ V + + + K+ I
Sbjct: 630 IWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVTGVQVRVERSDKR--PI 687
Query: 1461 YYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTG 1520
+Y+ +TRY M+EK A+ A ++LR Y +H +++ + P++ I +G
Sbjct: 688 FYV-------KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPTQSG 739
Query: 1521 KIARWQMLLSEYDIVFKTQKAIKGSI 1546
++ +W + LSE+D+ F+ + ++ ++
Sbjct: 740 RLGKWAIELSEFDLEFRARTSLNSTM 765
>At2g10780 pseudogene
Length = 1611
Score = 263 bits (671), Expect = 1e-69
Identities = 151/444 (34%), Positives = 239/444 (53%), Gaps = 14/444 (3%)
Query: 1101 LREYPDIFAWSYEDMPGL-DPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQI 1159
+ E+ D+FA P DP +E +P P+ + R P K+K ++++ +
Sbjct: 628 VNEFSDVFAAVSGVPPDRSDPFTIE----LEPGTTPISKAPYRMAPAEMAKLKKQLEELL 683
Query: 1160 DAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQS 1219
D GF+ P W A ++ V KKDG R+C+D+R LNK + K+ +PLP ID L+D +
Sbjct: 684 DKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGA 742
Query: 1220 KVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHD 1279
+ FS +D SGY+QI + P D KT+F T + F + VMPFGL NA A + + M +F D
Sbjct: 743 QWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRD 802
Query: 1280 MIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIV 1339
+ + V ++++D++V S E H E+L + ERLR+++L +KC+F RS LG ++
Sbjct: 803 FLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKLSKCSFWQRSVGFLGHVI 862
Query: 1340 SQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQP 1399
S +G+ VDP+K+R+I+E P P+ ++R FLG Y RF+ + P+ +L K+
Sbjct: 863 SDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTA 922
Query: 1400 IVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHA 1459
W+DEC+++F +K L P+LV P EG P +Y +GCVL Q K
Sbjct: 923 FNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGCVLMQ------KGSV 976
Query: 1460 IYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVT 1519
I Y S++ E Y + A+ + K R YL + + +KYIF + +
Sbjct: 977 IAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQIYTDHKSLKYIFTQPELN 1036
Query: 1520 GKIARWQMLLSEY--DIVFKTQKA 1541
+ RW L+++Y DI + KA
Sbjct: 1037 LRQRRWMELVADYNLDIAYHPGKA 1060
Score = 97.8 bits (242), Expect = 6e-20
Identities = 103/482 (21%), Positives = 198/482 (40%), Gaps = 45/482 (9%)
Query: 1697 VELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENV 1756
+++ + P NQ+ADAL+ S + V L+ + HV A+ ++ G
Sbjct: 1051 LDIAYHPGKANQVADALSRRRSEVEAER-SQVDLVNMMGT---LHVNALSKEVEPLGLGA 1106
Query: 1757 VDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLA-GRFLLDGNILYKRNYDMVLLRCVD 1815
D I+ E G ++ +K + G +++G + CV
Sbjct: 1107 ADQADLLSRIRLAQERDEEIKGWAQNNKTEYQTSNNGTIVVNGRV------------CVP 1154
Query: 1816 EHEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYAD 1873
A E+++ + H F H + M R L R Y+W+ M+ D + KC CQ+
Sbjct: 1155 NDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQLVKA 1213
Query: 1874 KIHVPPHALNVMSSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNV 1932
+ VP L + P W + +D + + + H + V +D TK + ++
Sbjct: 1214 EHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDK 1273
Query: 1933 T-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNG 1991
+++A+ + I+ +G+P I++D T + +A + + S+ Y PQ +
Sbjct: 1274 DGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDE 1333
Query: 1992 AVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPL 2050
E + ++ +++ V + +W + L Y + ++S G +P+ +YG PL
Sbjct: 1334 QSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPL 1393
Query: 2051 EVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPR 2110
+ E +L +++ ++ K +A R +SY +K+
Sbjct: 1394 -----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYA-------NKRRKEL 1441
Query: 2111 EFKVGELVLKRRISQQP----DPRGKWTPNYEGPYVVKKAFSGGALILTHMDGIELPNPV 2166
EF+VG+LV + ++ + R K +P Y GPY V + A L +LP +
Sbjct: 1442 EFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKL------DLPPKL 1495
Query: 2167 NA 2168
NA
Sbjct: 1496 NA 1497
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 261 bits (666), Expect = 4e-69
Identities = 149/453 (32%), Positives = 243/453 (52%), Gaps = 13/453 (2%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVE-HRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQI 1159
++E+ D+F + + GL P + I +P P+ + R P ++K +++ +
Sbjct: 460 VQEFQDVF----QSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLL 515
Query: 1160 DAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQS 1219
GF+ P W A ++ V KKDG R+C+D+R+LN+ + K+ +PLP ID L+D +
Sbjct: 516 GKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGA 574
Query: 1220 KVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHD 1279
FS +D SGY+QI ++ D KT+F T +G F + VMPFGL NA A + R M ++F +
Sbjct: 575 TCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQE 634
Query: 1280 MIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIV 1339
+ + V +++DD++V S E+ +L ++ E+LR+ KL +KC+F R LG IV
Sbjct: 635 FLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIV 694
Query: 1340 SQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQP 1399
S +G+ VDP+K+ AIR+ P P ++R FLG Y RF+ + P+ KL K+ P
Sbjct: 695 SAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVP 754
Query: 1400 IVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHA 1459
VW+ EC+E F S+K L P+L P G+P ++Y +GCVL Q +
Sbjct: 755 FVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGK------V 808
Query: 1460 IYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVT 1519
I Y S++ E Y + A+ +A K R YL + + +KYIF + +
Sbjct: 809 IAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELN 868
Query: 1520 GKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1552
+ RW L+++YD+ K +++ D L+
Sbjct: 869 LRQRRWMELVADYDLEIAYHPG-KANVVVDALS 900
Score = 31.2 bits (69), Expect = 6.9
Identities = 28/113 (24%), Positives = 49/113 (42%), Gaps = 10/113 (8%)
Query: 1845 LRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSP-WPFSMWGIDMIGRIE 1903
L+ Y W+ M+ D +C CQ+ + V L + P W + +D++ +
Sbjct: 965 LKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLV--VG 1022
Query: 1904 PKASNGHRFILVAIDYFTKWVEAASYTNVTK----QVVAKFIKNNIICRYGVP 1952
+ S I V +D TK +A + + K V+AK + I+ +GVP
Sbjct: 1023 LRVSRTKDAIWVIVDRLTK---SAHFLAIRKTDGAAVLAKKFVSEIVKLHGVP 1072
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 256 bits (655), Expect = 8e-68
Identities = 148/453 (32%), Positives = 241/453 (52%), Gaps = 13/453 (2%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVE-HRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQI 1159
++E+ D+F + + GL P + I +P P+ + R P ++K +++ +
Sbjct: 486 IQEFEDVF----QSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLEDLL 541
Query: 1160 DAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQS 1219
GF+ P W A ++ V KKDG R+C+D+R LN + K+ +PLP ID L+D +
Sbjct: 542 GKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGA 600
Query: 1220 KVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHD 1279
FS +D SGY+QI ++ D KT+F T +G F + VMPF L NA A + R M ++F +
Sbjct: 601 TCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQE 660
Query: 1280 MIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIV 1339
+ + V +++DD++V S E+H +L ++ E+LR+ KL +KC+F R LG IV
Sbjct: 661 FLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGHIV 720
Query: 1340 SQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQP 1399
S +G+ VDP+K+ AIR+ P P ++R FL Y RF+ + P+ KL K+ P
Sbjct: 721 SAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGKDVP 780
Query: 1400 IVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHA 1459
VW+ EC+E F S+K L P+L P G+P ++Y +GCVL Q+ +
Sbjct: 781 FVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQRGK------V 834
Query: 1460 IYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVT 1519
I Y S++ E Y + + +A K R YL + + +KYIF + +
Sbjct: 835 IAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQPELN 894
Query: 1520 GKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1552
+ RW L+++YD+ K +++AD L+
Sbjct: 895 LRQMRWMELVADYDLEIAYHPG-KANVVADALS 926
Score = 76.3 bits (186), Expect = 2e-13
Identities = 76/336 (22%), Positives = 135/336 (39%), Gaps = 57/336 (16%)
Query: 1815 DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADK 1874
DE +++ + H F H M R L R Y W+ M+ D +C CQ+ +
Sbjct: 1012 DEELRREILSEAHASMFSIHPGATKMYRDLKRY-YQWVGMKRDVANWVAECDVCQLVKAE 1070
Query: 1875 IHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTK 1934
VP ++W V +D TK +A + + K
Sbjct: 1071 HQVPD------------AIW--------------------VIMDRLTK---SAHFLAIRK 1095
Query: 1935 Q----VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMN 1990
V+AK + I+ +GVP I++D + +A + + S+ Y PQ +
Sbjct: 1096 TDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTD 1155
Query: 1991 GAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLP 2049
G E + ++ +++ V + W + L Y + ++S G PF +YG P
Sbjct: 1156 GQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTP 1215
Query: 2050 LEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHP 2109
L + E + A++ Q +++ +++ +A AR +SY DK+
Sbjct: 1216 LR-----WTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYA-------DKRRRE 1263
Query: 2110 REFKVGELV-LKRRISQQPDP---RGKWTPNYEGPY 2141
EF+VG+ V LK + + P+ K +P Y GP+
Sbjct: 1264 LEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPF 1299
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 248 bits (632), Expect = 4e-65
Identities = 139/397 (35%), Positives = 219/397 (55%), Gaps = 12/397 (3%)
Query: 1101 LREYPDIFAWSYEDMPGL-DPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQI 1159
+ E+ D+FA P DP +E +P P+ + R P ++K ++++ +
Sbjct: 123 VNEFSDVFAAVSGVPPDRSDPFTIE----LEPGTTPISKAPYRMAPAEMAELKKQLEELL 178
Query: 1160 DAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQS 1219
GF+ P W A ++ V KKDG R+C+D+R LNK + K+ +PLP ID L+D +
Sbjct: 179 AKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGA 237
Query: 1220 KVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHD 1279
+ FS +D SGY+QI + P D KT+F T +G F + VMPFGL NA A + + M +F D
Sbjct: 238 QWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRD 297
Query: 1280 MIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIV 1339
+ + V +++DD++V S E H E+L + ERLR+++L +K +F RS LG ++
Sbjct: 298 FLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKLSKFSFWQRSVGFLGHVI 357
Query: 1340 SQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQP 1399
S +G+ VDP+K+R+I+E P P+ ++R FLG Y RF+ + P+ +L K+
Sbjct: 358 SDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTA 417
Query: 1400 IVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHA 1459
W+DEC+++F +K L+ P+LV P EG P +Y +GCVL Q K
Sbjct: 418 FNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVGLGCVLMQ------KGSV 471
Query: 1460 IYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLV 1496
I Y S++ E Y + A+ +A K R YL+
Sbjct: 472 IAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLI 508
Score = 99.8 bits (247), Expect = 2e-20
Identities = 79/340 (23%), Positives = 148/340 (43%), Gaps = 22/340 (6%)
Query: 1813 CVDEHEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQI 1870
CV A E+++ + H F H + M R L R Y+W+ M D + KC CQ+
Sbjct: 544 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTCQL 602
Query: 1871 YADKIHVPPHAL-NVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 1929
+ VP L N+ S W + +D + R+ + H + V +D TK +
Sbjct: 603 VKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAI 662
Query: 1930 TNVT-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 1988
++ +++A+ + I+ +G+P I++D T + A + + S+ Y PQ
Sbjct: 663 SDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQ 722
Query: 1989 MNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 2047
+G E + ++ +++ V + +W + L Y + ++S G +P+ +YG
Sbjct: 723 TDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACR 782
Query: 2048 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKV 2107
PL + E +L +++ ++ K +A R +SY +K+
Sbjct: 783 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYA-------NKRR 830
Query: 2108 HPREFKVGELVLKRRISQQP----DPRGKWTPNYEGPYVV 2143
EF+VG+LV + ++ + R K +P Y GPY V
Sbjct: 831 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 870
>At3g11970 hypothetical protein
Length = 1499
Score = 246 bits (629), Expect = 8e-65
Identities = 154/458 (33%), Positives = 247/458 (53%), Gaps = 23/458 (5%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEH--RIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQ 1158
L EYPDIF + L P +H +I PV Q+ R ++ KNE+ K
Sbjct: 569 LNEYPDIFI----EPTALPPFREKHNHKIKLLEGSNPVNQRPYR----YSIHQKNEIDKL 620
Query: 1159 IDA----GFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVD 1214
++ G + P + + +V V KKDG R+CVD+R+LN + KD+FP+P I+ L+D
Sbjct: 621 VEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMD 679
Query: 1215 NTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMT 1274
+ +FS +D +GY+Q++M P+D +KT+F T G F Y VMPFGL NA AT+Q M
Sbjct: 680 ELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMN 739
Query: 1275 TLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKL 1334
+F + K V V+ DD++V S+ E+H ++L ++FE +R KL +KC F V +
Sbjct: 740 FIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEY 799
Query: 1335 LGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLL 1394
LG +S +GIE DP K++A++E P P T KQ+RGFLG Y RF+ GP+ L
Sbjct: 800 LGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPL-HAL 858
Query: 1395 RKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETG 1454
K W Q+AF+ +K L + P+L P+ + ++ + +G VL Q+
Sbjct: 859 TKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEG--- 915
Query: 1455 KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFE 1514
H + Y+S++ + ++ EK A+ +A ++ RHYL+ + + +KY+ E
Sbjct: 916 ---HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLE 972
Query: 1515 KAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1552
+ T +W L E+D + ++ K +++AD L+
Sbjct: 973 QRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALS 1009
Score = 81.3 bits (199), Expect = 6e-15
Identities = 85/327 (25%), Positives = 138/327 (41%), Gaps = 25/327 (7%)
Query: 1826 VHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVM 1885
+H G H+ G ++ + ++ +YW M D + R C CQ P L +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146
Query: 1886 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKN 1943
P P ++W + IE S G I+V +D +K + ++ + VA +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLD 1204
Query: 1944 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRI 2003
N+ +G P+ I++D + + + +S Y PQ +G E N+ ++
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264
Query: 2004 VQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIME 2062
++ M W + L A + Y T SS+ TPF +VYG V P V +P L E
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLP--GE 1318
Query: 2063 AKLS-EAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL-- 2119
+K++ A Q R D L ++ M A Q RMK D+ REF++G+ V
Sbjct: 1319 SKVAVVARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371
Query: 2120 ---KRRISQQPDPRGKWTPNYEGPYVV 2143
R+ S K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At1g36590 hypothetical protein
Length = 1499
Score = 246 bits (629), Expect = 8e-65
Identities = 154/458 (33%), Positives = 247/458 (53%), Gaps = 23/458 (5%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEH--RIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQ 1158
L EYPDIF + L P +H +I PV Q+ R ++ KNE+ K
Sbjct: 569 LNEYPDIFI----EPTALPPFREKHNHKIKLLEGSNPVNQRPYR----YSIHQKNEIDKL 620
Query: 1159 IDA----GFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVD 1214
++ G + P + + +V V KKDG R+CVD+R+LN + KD+FP+P I+ L+D
Sbjct: 621 VEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMD 679
Query: 1215 NTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMT 1274
+ +FS +D +GY+Q++M P+D +KT+F T G F Y VMPFGL NA AT+Q M
Sbjct: 680 ELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMN 739
Query: 1275 TLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKL 1334
+F + K V V+ DD++V S+ E+H ++L ++FE +R KL +KC F V +
Sbjct: 740 FIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEY 799
Query: 1335 LGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLL 1394
LG +S +GIE DP K++A++E P P T KQ+RGFLG Y RF+ GP+ L
Sbjct: 800 LGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPL-HAL 858
Query: 1395 RKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETG 1454
K W Q+AF+ +K L + P+L P+ + ++ + +G VL Q+
Sbjct: 859 TKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEG--- 915
Query: 1455 KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFE 1514
H + Y+S++ + ++ EK A+ +A ++ RHYL+ + + +KY+ E
Sbjct: 916 ---HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLE 972
Query: 1515 KAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1552
+ T +W L E+D + ++ K +++AD L+
Sbjct: 973 QRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALS 1009
Score = 76.6 bits (187), Expect = 1e-13
Identities = 84/327 (25%), Positives = 138/327 (41%), Gaps = 25/327 (7%)
Query: 1826 VHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVM 1885
+H G H+ G ++ + ++ +Y M D + R C CQ P L +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146
Query: 1886 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKN 1943
P P ++W + IE S G I+V +D +K + ++ + VA+ +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLD 1204
Query: 1944 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRI 2003
N+ +G P+ I++D + + + +S Y PQ +G E N+ ++
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264
Query: 2004 VQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIME 2062
++ M W + L A + Y T SS+ TPF +VYG V P V +P L E
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLP--GE 1318
Query: 2063 AKLS-EAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL-- 2119
+K++ A Q R D L ++ M A Q RMK D+ REF++G+ V
Sbjct: 1319 SKVAVVARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371
Query: 2120 ---KRRISQQPDPRGKWTPNYEGPYVV 2143
R+ S K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 244 bits (624), Expect = 3e-64
Identities = 145/453 (32%), Positives = 236/453 (52%), Gaps = 25/453 (5%)
Query: 1103 EYPDIFAWSYEDMPGLDPMIVE-HRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDA 1161
E+ D+F + + GL P + I +P P+ + R P ++K +++ + A
Sbjct: 449 EFEDVF----QSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGA 504
Query: 1162 GFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKV 1221
L V KKDG R+C+D+R LN + K+ +PLP ID L+D +
Sbjct: 505 PVLF-------------VKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATC 551
Query: 1222 FSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMI 1281
FS +D SGY+ I ++ D KT+F T +G F + VMPFGL NA A + R M ++F +++
Sbjct: 552 FSKIDLTSGYHLIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVL 611
Query: 1282 HKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQ 1341
+ V +++DD++V S E+H +L ++ E+LR+ KL +KC+F R LG IVS
Sbjct: 612 DEFVIIFIDDILVYSKSLEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSA 671
Query: 1342 KGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIV 1401
+G+ VDP+K+ AIR+ P ++R FLG Y RF+ + P+ KL K+ P V
Sbjct: 672 EGVSVDPEKIEAIRDWHTPTNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFV 731
Query: 1402 WNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIY 1461
W+ EC+E F S+K L P+L P G P ++Y +GCVL Q+ + I
Sbjct: 732 WSPECEEGFVSLKEMLTSTPVLALPEHGEPYMVYTDASGVGLGCVLMQRGK------VIA 785
Query: 1462 YLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1521
Y S++ E Y + A+ +A K R YL + + +KYIF + + +
Sbjct: 786 YASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLR 845
Query: 1522 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQ 1554
+W L+++YD+ K +++AD L+++
Sbjct: 846 QRQWMELVADYDLEIAYHPG-KANVVADALSHK 877
Score = 68.6 bits (166), Expect = 4e-11
Identities = 69/288 (23%), Positives = 122/288 (41%), Gaps = 27/288 (9%)
Query: 1864 KCHKCQIYADKIHVPPHALNVMSSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTK 1922
+C CQ+ + VP L + P W + ID + + S I V +D TK
Sbjct: 949 ECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFV--VGLPVSRTKDAIWVIVDRLTK 1006
Query: 1923 WVEAASYTNVTKQ----VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIE 1978
+A + + K V+AK + I+ +GVP I++D + + +A E +
Sbjct: 1007 ---SAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTK 1063
Query: 1979 HHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATP 2037
S+ Y PQ G E + ++ +++ V + W + L Y + +S G P
Sbjct: 1064 VQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIGMAP 1123
Query: 2038 FSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQA 2097
F +Y PL L + E + A++ Q +++ +++ +A R +SY
Sbjct: 1124 FEALYERPCRTPL-----CLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSYA- 1177
Query: 2098 RMKTAFDKKVHPREFKVGELV-LKRRISQQPD---PRGKWTPNYEGPY 2141
DK+ EF+VG+ V LK + + P+ K +P Y GP+
Sbjct: 1178 ------DKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPF 1219
>At1g35370 hypothetical protein
Length = 1447
Score = 236 bits (602), Expect = 1e-61
Identities = 153/454 (33%), Positives = 241/454 (52%), Gaps = 19/454 (4%)
Query: 1099 NSLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQ 1158
N + E+PD+FA + P + +H+I PV Q+ R +I VQ
Sbjct: 546 NIVEEFPDVFAEPTDLPPFREKH--DHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDM 603
Query: 1159 IDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQ 1218
I +G + P + + +V V KKDG R+CVD+ +LN + KD F +P I+ L+D
Sbjct: 604 IKSGTIQVSSSP-FASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGG 662
Query: 1219 SKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFH 1278
S VFS +D +GY+Q++M P+D +KT+F T G F Y VM FGL NA AT+Q M ++F
Sbjct: 663 SVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFR 722
Query: 1279 DMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFI 1338
D + K V V+ DD+++ S+ E+H E+L +FE +R +KL F S + LG
Sbjct: 723 DFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKL--------FAKGSKEHLGHF 774
Query: 1339 VSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQ 1398
+S + IE DP K++A++E P P T KQVRGFLG Y RF+ + GP+ L K
Sbjct: 775 ISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYRRFVRNFGVIAGPL-HALTKTD 833
Query: 1399 PIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEH 1458
W+ E Q AFD++K L P+L PV + ++ E+ C G + +K H
Sbjct: 834 GFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMV------ETDACGQGIRAVLMQKGH 887
Query: 1459 AIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWLISRMDPIKYIFEKAAV 1518
+ Y+S++ + ++ EK A +A ++ RHYL+ + + +KY+ E+
Sbjct: 888 PLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLN 947
Query: 1519 TGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1552
T +W L E+D + ++ K +++AD L+
Sbjct: 948 TPVQQQWLPKLLEFDYEIQYRQG-KENLVADALS 980
Score = 84.0 bits (206), Expect = 9e-16
Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 26/347 (7%)
Query: 1836 TGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWG 1895
+G S + +++ +YW M D R C CQ P L + P P +W
Sbjct: 1068 SGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL--PIPDKIWC 1125
Query: 1896 IDMIGRIEPKASNGHR-FILVAIDYFTKWVEAASYTN-VTKQVVAKFIKNNIICRYGVPS 1953
+ IE ++G + I+V +D +K + + + VA+ +N+ +G P+
Sbjct: 1126 DVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPT 1185
Query: 1954 KIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD 2013
I++D ++ + + +E SS Y PQ +G E N+ ++ ++ M
Sbjct: 1186 SIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPH 1245
Query: 2014 -WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQ 2072
W++ LP A + Y T SS+ TPF LVYG + L +V + A+ Q
Sbjct: 1246 LWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARS-----LQ 1300
Query: 2073 SRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL-----KRRISQQP 2127
R + L ++ M A Q RMK D+ R F +G+ V R+ S
Sbjct: 1301 ERENMLLFLKFHLMRA-------QHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVL 1353
Query: 2128 DPRGKWTPNYEGPY-VVKKAFSGGALILTHMDGIELPNPVNADIVKK 2173
K +P Y GPY +++K G ++ +LP+ V DI +K
Sbjct: 1354 RVNQKLSPKYFGPYKIIEKC--GEVMVGNVTTSTQLPS-VLPDIFEK 1397
>At2g14040 putative retroelement pol polyprotein
Length = 841
Score = 234 bits (596), Expect = 5e-61
Identities = 148/470 (31%), Positives = 230/470 (48%), Gaps = 77/470 (16%)
Query: 1101 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQID 1160
LR+Y +S +D+ G+ P + H I + E + RR + ++ +K E+ K +D
Sbjct: 340 LRKYRKALGYSLDDITGISPTLCMHMIHLEGESITSVEHQRRLNSNLRDVVKKEIMKLLD 399
Query: 1161 AGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDFRDLNKASPKD 1202
AG + + WV+ + VPKK G + RMC+D+R LN A+ KD
Sbjct: 400 AGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKD 459
Query: 1203 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 1262
NFPL ID +++ + + F+DG+ G+ QI + P+D+EKT+F P+GTF Y+ MPFGL
Sbjct: 460 NFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGL 519
Query: 1263 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNP 1322
NA AT+Q M +F DMI +EV++DD +V E++H L LN
Sbjct: 520 CNAPATFQHCMKYIFSDMIEDFMEVFIDDFLVLQRCEDKH---------------LVLNW 564
Query: 1323 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 1382
K F VR G +LG +S+KG+EVD K+ +R FLG + RFI
Sbjct: 565 EKSHFMVRDGIVLGHKISEKGVEVDRAKIEIMR-------------FLGHAGFYRRFIKD 611
Query: 1383 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDES 1442
+ P +LL K Q ++D C +AF+ +K L+ I+ PP P + D
Sbjct: 612 FSKIARPCTQLLCKEQKSEFDDTCLQAFNIVKESLVSALIVQPPEWELPFEVICDASDYV 671
Query: 1443 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLRHYLVNHTTWL 1502
+G VLGQ+ + KK HAIYY S+ + ++ HT
Sbjct: 672 VGAVLGQRKD--KKLHAIYYASRTLDGAQ-----------------------VIVHTVHA 706
Query: 1503 ISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1552
++Y+ K ++ RW +LL ++D+ K +K I+ + AD+L+
Sbjct: 707 -----ALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEV-ADNLS 750
>At2g10690 putative retroelement pol polyprotein
Length = 622
Score = 204 bits (520), Expect = 4e-52
Identities = 121/381 (31%), Positives = 202/381 (52%), Gaps = 18/381 (4%)
Query: 1200 PKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYN-------QIKMSPEDREKTSFITPWGT 1252
P D +P+ ++ D + +V ++ Y +++ + ++KT+F P GT
Sbjct: 119 PNDTYPV----IINDGLSDEQVNQLLNELRKYRGQLVVSFKLQFTLMIKKKTTFTCPNGT 174
Query: 1253 FCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFER 1312
F YK M FGL NA T+QR MT++F D I + +EV++DD S+ + L ++ ER
Sbjct: 175 FAYKRMSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFSGFSSC----LLNLCRVLER 230
Query: 1313 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGR 1372
+ L LN KC F V G +LG +S KGIEVD K+ + ++ P+T K +R FLG
Sbjct: 231 CEETNLVLNWEKCHFMVHEGIVLGHKISGKGIEVDKAKIDVMIQLQPPKTVKDIRSFLGH 290
Query: 1373 LNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPL 1432
+ RFI + P+ +LL K ++++C +AF IK L+ PI P P
Sbjct: 291 AEFYRRFIKDFSKIARPLTRLLCKETEFNFDEDCLKAFHLIKETLVSAPIFQAPNWDHPF 350
Query: 1433 IMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWATKRLR 1492
+ FD ++G VL Q+ + K H IYY S+ + +TRY +EK A+ +A +++R
Sbjct: 351 EIMCDAFDYAVGAVLDQKID--DKLHVIYYASRTMDEAQTRYATIEKELLAVVFAFEKIR 408
Query: 1493 HYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1552
YLV + +++I+ K ++ RW +LL E+D+ +K ++ + ADHL+
Sbjct: 409 SYLVGFKVKVYIDHAALRHIYAKKETKSRLLRWILLLQEFDMEIIDKKGVENGV-ADHLS 467
Query: 1553 YQPLDDYQPIEFDFPDEEIMY 1573
++D PI+ P+E++M+
Sbjct: 468 RMRIEDSVPIDDTMPEEQLMF 488
Score = 53.5 bits (127), Expect = 1e-06
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 1990 NGAVEAANKNIKRIVQKMVTTYK-DWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVL 2048
+G VE +N+ +K I+ K+V K DW L L YRT ++ G TPF ++YG L
Sbjct: 525 SGQVEVSNRQMKDILTKVVGVSKRDWSTKLDETLWAYRTAYKTPIGRTPFQMLYGKSCHL 584
Query: 2049 PLEVEIPSL 2057
P+EVE ++
Sbjct: 585 PVEVEYKAI 593
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.340 0.148 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,934,215
Number of Sequences: 26719
Number of extensions: 1856340
Number of successful extensions: 6575
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 6173
Number of HSP's gapped (non-prelim): 291
length of query: 2175
length of database: 11,318,596
effective HSP length: 115
effective length of query: 2060
effective length of database: 8,245,911
effective search space: 16986576660
effective search space used: 16986576660
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC135162.7