BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134967.10 + phase: 0 /pseudo
         (624 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g10830 putative protein                                            192  5e-49
At2g31520 putative non-LTR retroelement reverse transcriptase         188  9e-48
At2g25550 putative non-LTR retroelement reverse transcriptase         187  1e-47
At3g45550 putative protein                                            187  2e-47
At1g47910 reverse transcriptase, putative                             187  2e-47
At2g17910 putative non-LTR retroelement reverse transcriptase         184  1e-46
At3g32110 non-LTR reverse transcriptase, putative                     175  6e-44
At1g24640 hypothetical protein                                        175  6e-44
At2g17610 putative non-LTR retroelement reverse transcriptase         170  2e-42
At2g31080 putative non-LTR retroelement reverse transcriptase         169  3e-42
At1g25430 hypothetical protein                                        169  3e-42
At4g15590 reverse transcriptase like protein                          164  1e-40
At2g05200 putative non-LTR retroelement reverse transcriptase         164  1e-40
At2g11240 pseudogene                                                  163  2e-40
At2g45230 putative non-LTR retroelement reverse transcriptase         162  5e-40
At2g16680 putative non-LTR retroelement reverse transcriptase         161  9e-40
At2g05980 putative non-LTR retroelement reverse transcriptase         160  2e-39
At4g09710 RNA-directed DNA polymerase -like protein                   158  8e-39
At1g31030 F17F8.5                                                     158  1e-38
At2g41580 putative non-LTR retroelement reverse transcriptase         156  4e-38

>At4g10830 putative protein
          Length = 1294

 Score =  192 bits (488), Expect = 5e-49
 Identities = 112/292 (38%), Positives = 168/292 (57%), Gaps = 5/292 (1%)

Query: 1    WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
            W KWI   V +   SVLVNG P      +RG+RQGDPLSP+LF+L A+ LN ++K+ V  
Sbjct: 964  WIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAE 1023

Query: 61   QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
                G  IG   P  V+HLQFADD+L     +  N +AL+    ++E  SG K+N  KSM
Sbjct: 1024 GDIRGIRIGNGVP-GVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSM 1082

Query: 121  LV-GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWN 179
            +  G  +  +      ++L  +       YL +P     ++   +  I+ R+K R S W+
Sbjct: 1083 ITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWS 1142

Query: 180  SRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKIS 239
            +++LS  G+ ++LKSV  S+PVYA+S FK P  I+S I++L +NF+      +   R+I 
Sbjct: 1143 AKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFW---WEKNAKKREIP 1199

Query: 240  WLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY 291
            W++W+ +   K+ GGLG R L +FN ALL K  WRM+ +   L+ R++ ARY
Sbjct: 1200 WIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARY 1251


>At2g31520 putative non-LTR retroelement reverse transcriptase
          Length = 1524

 Score =  188 bits (477), Expect = 9e-48
 Identities = 111/292 (38%), Positives = 165/292 (56%), Gaps = 5/292 (1%)

Query: 1    WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
            W  WI   V +   SVL+NGSP       RG+RQGDPLSP+LF+L  + L+ ++     +
Sbjct: 758  WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASS 817

Query: 61   QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
                G  IG   P  ++HLQFADD+L     +  N +AL+    ++E  SG K+N  KSM
Sbjct: 818  GDLRGVRIGNGAP-AITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSM 876

Query: 121  LV-GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWN 179
            +  G  +  S   +   +L          YL +P     ++   +E I++R+K R S W+
Sbjct: 877  ITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWS 936

Query: 180  SRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKIS 239
            +RFLS  G+ ++LKSV  ++PVYA+S FK P GI+S I+SL +NF+      + + R I 
Sbjct: 937  ARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFW---WEKASNQRGIP 993

Query: 240  WLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY 291
            W++W+ +   K+ GGLG R L +FN ALL K  WR++     L+ RV+ ARY
Sbjct: 994  WVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY 1045


>At2g25550 putative non-LTR retroelement reverse transcriptase
          Length = 1750

 Score =  187 bits (476), Expect = 1e-47
 Identities = 111/292 (38%), Positives = 164/292 (56%), Gaps = 5/292 (1%)

Query: 1    WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
            W  WI   V +   SVL+NGSP       RG+RQGDPLSP+LF+L  + L+ ++     +
Sbjct: 984  WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASS 1043

Query: 61   QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
                G  IG   P  ++HLQFADD+L     +  N +AL+    ++E  SG K+N  KSM
Sbjct: 1044 GDLRGVRIGNGAP-AITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSM 1102

Query: 121  LV-GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWN 179
            +  G  +  S       +L          YL +P     ++   +E I++R+K R S W+
Sbjct: 1103 ITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWS 1162

Query: 180  SRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKIS 239
            +RFLS  G+ ++LKSV  ++PVYA+S FK P GI+S I+SL +NF+      + + R I 
Sbjct: 1163 ARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFW---WEKASNQRGIP 1219

Query: 240  WLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY 291
            W++W+ +   K+ GGLG R L +FN ALL K  WR++     L+ RV+ ARY
Sbjct: 1220 WVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY 1271


>At3g45550 putative protein
          Length = 851

 Score =  187 bits (475), Expect = 2e-47
 Identities = 119/332 (35%), Positives = 182/332 (53%), Gaps = 14/332 (4%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W  WI   V +   SVL+NGSP       RG+RQGDPLSP+LF+L  + L+ ++K    +
Sbjct: 223 WIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASS 282

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
               G  IG   P  ++HLQFADD+L     +  N +AL+    ++E  SG K+N  KS+
Sbjct: 283 GDIRGVRIGNGAP-AITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSL 341

Query: 121 LV-GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWN 179
           +  G  +  S      ++L+         YL +P     ++   +  I++R+K R + W+
Sbjct: 342 ITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWS 401

Query: 180 SRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKIS 239
           ++FLS  G+ +LLKSV  ++PVYA+S FK P GI+S I+SL +NF+      + + R I 
Sbjct: 402 AKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFW---WEKASNKRGIP 458

Query: 240 WLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGRLE 299
           W++W+ +   K+ GGLG R L +FN ALL K  WR++     L+ RV+ ARY +    ++
Sbjct: 459 WVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIID 518

Query: 300 VGGRSVSCW-WSE----VRRLRDG----VGDG 322
              RS   + WS     +  LR G    +GDG
Sbjct: 519 AKTRSQQSYGWSSLLSGIALLRKGTRYVIGDG 550


>At1g47910 reverse transcriptase, putative
          Length = 1142

 Score =  187 bits (474), Expect = 2e-47
 Identities = 116/350 (33%), Positives = 181/350 (51%), Gaps = 18/350 (5%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W  WI  C++T    VL+NG P      +RGLRQGDPLSP+LF+L  E L   ++     
Sbjct: 386 WISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQ 445

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
            L +G  +   +P  VSHL FADD+L     +      +   L  +E++SG ++NF KS 
Sbjct: 446 NLITGIKVATPSP-AVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSS 504

Query: 121 L-VGVNIGSSWLYEAASVLSCK--VGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSG 177
           +  G  +  S   +   +L      G+  +L L   +GG+  ++  +  + +R++SR++G
Sbjct: 505 IQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKV--FSFVRDRLQSRING 562

Query: 178 WNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRK 237
           W+++FLS GG+ V++KSV  +LP Y +S F+ P  I S + S    F+    G   D+R 
Sbjct: 563 WSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNG---DSRG 619

Query: 238 ISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGR 297
           + W++W  +C  K  GGLG R + +FN ALL K  WR++     L+ +V   RY      
Sbjct: 620 MHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNP 679

Query: 298 LE-VGGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
           L+ +   S S  W  +   R  V  G        +++RVG G   S W+D
Sbjct: 680 LDSIKSYSPSYGWRSMISARSLVYKG--------LIKRVGSGASISVWND 721


>At2g17910 putative non-LTR retroelement reverse transcriptase
          Length = 1344

 Score =  184 bits (468), Expect = 1e-46
 Identities = 122/358 (34%), Positives = 186/358 (51%), Gaps = 32/358 (8%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W  WI  CV++ + SVL+NG P       RG+RQGDPLSP LF+L  E L  ++    +A
Sbjct: 580 WISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQA 639

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
              +G        + V+HL FADDTLL+   +      L   L  +  +SG  +N +KS 
Sbjct: 640 GKITGIQF-QDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSA 698

Query: 121 LV-GVNIG---SSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
           +  G N+      W+ ++ S +S + G   +L L   + G+ R L  +  I  +++SRL+
Sbjct: 699 ITFGKNVDIQIKDWI-KSRSGISLEGGTGKYLGLPECLSGSKRDLFGF--IKEKLQSRLT 755

Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
           GW ++ LS GG+ VLLKS+  +LPVY +S FK P  +   + ++ ++F+       +  R
Sbjct: 756 GWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNS---MQQKR 812

Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGG 296
           KI WLSWQ + L K+ GG G + L+ FN ALL K  WR+L ++G L+ RV  +RY     
Sbjct: 813 KIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSD 872

Query: 297 RLEV--GGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRR-----VGDGVVTSFWSDR 347
            L    G R    W S +              FG ++L +     +G+G  T  W+D+
Sbjct: 873 FLSATRGSRPSYAWRSIL--------------FGRELLMQGLRTVIGNGQKTFVWTDK 916


>At3g32110 non-LTR reverse transcriptase, putative
          Length = 1911

 Score =  175 bits (444), Expect = 6e-44
 Identities = 123/355 (34%), Positives = 178/355 (49%), Gaps = 23/355 (6%)

Query: 1    WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
            W +WI +CV   +  +L NG  TD F   RGLRQGDPLSP+LF+L  E L  +++S + A
Sbjct: 1141 WVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAA 1200

Query: 61   QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
            + +    I  + P  +SH+ FADD +L    S   +R LR  L  F   SG KV+  KS 
Sbjct: 1201 KKWKPIKISQSGP-RLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSK 1259

Query: 121  L-----VGVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRL 175
            +     V  ++G     E+    +  +G     YL +PI         +  ++ R  SRL
Sbjct: 1260 IYFSKNVLRDLGKRISEESGMKATKDLG----KYLGVPILQKRINKETFGEVIKRFSSRL 1315

Query: 176  SGWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDN 235
            +GW  R LSF GRL L K+VLTS+ V+ +S  K P   +  +D +   F     G + + 
Sbjct: 1316 AGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFL---WGSTLEK 1372

Query: 236  RKISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY--GE 293
            +K   ++W  VCL +  GGLG+R     N AL+ K  WR+L D   LW +V+ ++Y  G+
Sbjct: 1373 KKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGD 1432

Query: 294  LGGR-LEVGGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSDR 347
            +  R   V   + S  W  V     GVG     W     +  +GDG    FW+DR
Sbjct: 1433 VHDRNWTVAKSNWSSTWRSV-----GVGLRDVIWREQHWV--IGDGRQIRFWTDR 1480


>At1g24640 hypothetical protein
          Length = 1270

 Score =  175 bits (444), Expect = 6e-44
 Identities = 119/351 (33%), Positives = 174/351 (48%), Gaps = 20/351 (5%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W  WI  CVS+ T SVL+N  P     L+RGLRQGDPLSPFLF+L  EGL  ++      
Sbjct: 565 WVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWE 624

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
               G       P +V HL FADD+L L   S      L+  L ++   +G  +N +KS 
Sbjct: 625 GALEGIQFSENGP-MVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKS- 682

Query: 121 LVGVNIGSSWLYEAASVLSCKVGIV----PFLYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
              +  G     +    +   +GI        YL +P   +  ++     + +R+K +L 
Sbjct: 683 --SITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLD 740

Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
            W +R LS GG+ VLLKSV  ++PV+A+S FK P     +++S   +F+       + +R
Sbjct: 741 VWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFW---WDSCDHSR 797

Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGG 296
           KI W SW+ +CL K+ GGLG R ++ FN ALL K  WR+L     L  R+L +RY +   
Sbjct: 798 KIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATD 857

Query: 297 RLEVG-GRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
            L+    +  S  W  +   R+ +  G        + +RVGDG     W D
Sbjct: 858 FLDAALSQRPSFGWRSILFGRELLSKG--------LQKRVGDGASLFVWID 900


>At2g17610 putative non-LTR retroelement reverse transcriptase
          Length = 773

 Score =  170 bits (430), Expect = 2e-42
 Identities = 100/295 (33%), Positives = 156/295 (51%), Gaps = 11/295 (3%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W  WI  C++T T S+L+NG P      KRG+RQGDP+SP+L+LL  EGL+ ++++ ++A
Sbjct: 57  WCNWIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKA 116

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
           +   G+      P  +SHL FA D+L+    +      L   L L+E  SG  VNF KS 
Sbjct: 117 KQLHGFKASRNGP-AISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSA 175

Query: 121 LVGVNIGSSWLYEAASVLSCKVGIVPF----LYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
           ++    G    +  +  LS  +GI        YL +P      +   +  I   +  ++ 
Sbjct: 176 IL---FGKGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMD 232

Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
            W ++ LS  G+ VL+KS++T++P Y++S F  P  +I  I S    F+      ++   
Sbjct: 233 NWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFW---WSNTKVKH 289

Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY 291
           KI W++W  +   K+ GGL +R LK+FN+ALL K  WR+L     L  RV  A+Y
Sbjct: 290 KIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKY 344


>At2g31080 putative non-LTR retroelement reverse transcriptase
          Length = 1231

 Score =  169 bits (429), Expect = 3e-42
 Identities = 121/355 (34%), Positives = 176/355 (49%), Gaps = 23/355 (6%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W   I   V+  + SVL NG  TD F   RGLRQGDPLSP+LF+L  E L  ++++ V  
Sbjct: 465 WTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGK 524

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
           + +   ++       +SH+ FADD +L    S A +R +R  L  F   SG KV+  KS 
Sbjct: 525 REWKPIAVSCGGS-KLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSK 583

Query: 121 LV---GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSG 177
           +     V+     L    S + C   +    YL MPI         +  ++ R+ +RL+G
Sbjct: 584 IFFSHNVSREMEQLISEESGIGCTKELGK--YLGMPILQKRMNKETFGEVLERVSARLAG 641

Query: 178 WNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRK 237
           W  R LS  GR+ L K+VL+S+PV+ +S    P   + ++D     F  G    + + +K
Sbjct: 642 WKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGS---TMEKKK 698

Query: 238 ISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGG- 296
              LSW+ +C  K  GG+G+R  ++ N AL+ K  WR+L D+  LW RV+  +Y ++GG 
Sbjct: 699 QHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKY-KVGGV 757

Query: 297 ----RLEVGGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSDR 347
                L+   R  S W S    LR+ V   G GW         GDG    FW DR
Sbjct: 758 QDTSWLKPQPRWSSTWRSVAVGLREVVVK-GVGWV-------PGDGCTIRFWLDR 804


>At1g25430 hypothetical protein
          Length = 1213

 Score =  169 bits (429), Expect = 3e-42
 Identities = 118/347 (34%), Positives = 174/347 (50%), Gaps = 21/347 (6%)

Query: 4   WIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEAQLF 63
           WI +C+ST T +V +NG     F   +GLRQGDPLSP+LF+LA E  + ++ S  E+ L 
Sbjct: 622 WISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLI 681

Query: 64  SGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKS--ML 121
             Y   A+N + +SHL FADD ++       ++  +   L  F + SGLKVN  KS   L
Sbjct: 682 H-YHPKASN-LSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYL 739

Query: 122 VGVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWNSR 181
            G+N   S    A +     +G +P  YL +P+     R+  +EP++ +I +R   W ++
Sbjct: 740 AGLNQLES---NANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNK 796

Query: 182 FLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKISWL 241
            LSF GR+ L+ SV+     + +S F  P G I  I+SL   F   G        K+SW 
Sbjct: 797 CLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWA 856

Query: 242 SWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGRLEV- 300
           +   +CL K  GGLG+R+L E+N  L  +  WR+ V +  LW       +   G    V 
Sbjct: 857 A---LCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVE 913

Query: 301 GGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVL-RRVGDGVVTSFWSD 346
           GG+S S  W  +  LR             Q L  +VG+G+   +W D
Sbjct: 914 GGQSDSWTWKRLLSLRP---------LAHQFLVCKVGNGLKADYWYD 951


>At4g15590 reverse transcriptase like protein
          Length = 929

 Score =  164 bits (415), Expect = 1e-40
 Identities = 117/333 (35%), Positives = 164/333 (49%), Gaps = 38/333 (11%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W K I ECV+    S+L NG  TD F  +RGLRQGDP+SP+LF+L  E L   +++ V  
Sbjct: 417 WIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGR 476

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
             +   SI    P  VSH+ FADD +L    S A   +L  + + F   + +  +    +
Sbjct: 477 GDWKSISISQGGP-KVSHVCFADDLILFAEASVAQKVSLEKSKIFFS--NNVSRDLEGLI 533

Query: 121 LVGVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWNS 180
                IGS+           ++G     YL MP+         +  ++ R+ SRLSGW S
Sbjct: 534 TAETGIGSTR----------ELG----KYLGMPVLQKRINKDTFGEVLERVSSRLSGWKS 579

Query: 181 RFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKISW 240
           R LS  GR+ L K+VL S+P++ +S    P  ++  +D +  NF     G + + RK   
Sbjct: 580 RSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFL---WGSTVEKRKQHL 636

Query: 241 LSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGRLEV 300
           LSW+ VC  K  GGLG+R  K+ N ALL K  WR+L D+  LW RVL  +Y       +V
Sbjct: 637 LSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKY-------KV 689

Query: 301 GGRSVSCW------WSEVRR-----LRDGVGDG 322
                S W      WS   R     LR+GV  G
Sbjct: 690 TDVHDSSWLVPKATWSSTWRSIGVGLREGVAKG 722


>At2g05200 putative non-LTR retroelement reverse transcriptase
          Length = 1229

 Score =  164 bits (415), Expect = 1e-40
 Identities = 111/348 (31%), Positives = 168/348 (47%), Gaps = 14/348 (4%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W  W+ ECV++ + S L+NG+P  +    RGLRQGDPLSP LF+L  E L+ +       
Sbjct: 497 WIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRL 556

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
           +   G  +    P V +HL FADDT+        +   L   L  +   SG  +NFHKS 
Sbjct: 557 RQLPGVRVSINGPRV-NHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSS 615

Query: 121 LV-GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWN 179
           +        S   +   +L  +       YL +P     R+   +  I+++I+ +   W 
Sbjct: 616 VTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWA 675

Query: 180 SRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKIS 239
           SRFLS  G+ V+LK+VL S+P+Y++S FK P+ +   I SL   F+        D RK S
Sbjct: 676 SRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFW---WDTKPDVRKTS 732

Query: 240 WLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGGRLE 299
           W++W  +   K  GGLG R ++  N +LL K  WR+L     L  R+L+ +Y      +E
Sbjct: 733 WVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFME 792

Query: 300 VGGRS-VSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
               S  S  W  +   R+ + + G GW        + +G   S W+D
Sbjct: 793 CKLPSQPSHGWRSIIAGREILKE-GLGWL-------ITNGEKVSIWND 832


>At2g11240 pseudogene
          Length = 1044

 Score =  163 bits (413), Expect = 2e-40
 Identities = 111/351 (31%), Positives = 173/351 (48%), Gaps = 20/351 (5%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLN-IVMKSLVE 59
           W  WI +C++T + S L+NGS       +RGLRQGDPLSPFLF++ +E L+ +  K+ ++
Sbjct: 428 WISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLD 487

Query: 60  AQLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKS 119
             L  G  +   NP  V+HL FADDT+        + +     L  +E  SG  +N  KS
Sbjct: 488 GSLL-GLRVSKGNP-RVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKS 545

Query: 120 MLVGVNIGSSWL-YEAASVLSCKV--GIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
            +         +  EA  +L  ++  G+  +L L    G   R L  +  IV+RI+ R  
Sbjct: 546 AITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDL--FNQIVDRIRQRSL 603

Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
            W+SRFLS  G+  +LKSVL S+P Y +S FK    +   I S   +F+      S D +
Sbjct: 604 SWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFW---WDSSADKK 660

Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGG 296
           K+ W++W  +   K+ GGLG + +  FN ALL K  WR++     +  R+L+ +Y     
Sbjct: 661 KMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCRTSS 720

Query: 297 RLEVGGRSVSC-WWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
            L+    + S   W  +          G      Q+ + +G G+ T  W++
Sbjct: 721 FLDCSVTAASSHGWRGICT--------GKDLIKSQLGKVIGSGLDTLVWNE 763


>At2g45230 putative non-LTR retroelement reverse transcriptase
          Length = 1374

 Score =  162 bits (410), Expect = 5e-40
 Identities = 105/351 (29%), Positives = 172/351 (48%), Gaps = 20/351 (5%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W + I ECV +    VL+NG+P  E    RGLRQGDPLSP+LF++  E L  +++S  + 
Sbjct: 602 WIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQK 661

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
              +G  +    P  +SHL FADD++     +   +  +   +  +   SG +VN+ KS 
Sbjct: 662 NQITGLKVARGAP-PISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKS- 719

Query: 121 LVGVNIGSSWLYEAASVLSCKVGIV----PFLYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
              +  G     E   ++  K+GI       +YL +P      ++     + +R+  ++ 
Sbjct: 720 --SIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVL 777

Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
           GW S FLS GG+ +LLK+V  +LP Y +S FK P  I   I+S+   F+       ++ R
Sbjct: 778 GWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFW---WKNKKEGR 834

Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGG 296
            + W +W  +   K  GGLG ++++ FN+ALLGK  WRM+ ++  L  +V  +RY     
Sbjct: 835 GLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSD 894

Query: 297 RLEVG-GRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
            L    G   S  W  +   +  +  G        +   +G+G   + W+D
Sbjct: 895 PLNAPLGSRPSFAWKSIYEAQVLIKQG--------IRAVIGNGETINVWTD 937


>At2g16680 putative non-LTR retroelement reverse transcriptase
          Length = 1319

 Score =  161 bits (408), Expect = 9e-40
 Identities = 108/352 (30%), Positives = 178/352 (49%), Gaps = 20/352 (5%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W  WI  CV++ T SVL+NG        +RG+RQGDP+SPFLF+L  E L  +++    +
Sbjct: 554 WISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQAENS 613

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
           +  SG     + P  V+HL F DDT L+   + ++   +   L  +  +SG  +N  KS 
Sbjct: 614 KKVSGIQFNGSGP-SVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVEKSS 672

Query: 121 LV-GVNIGSS---WLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
           +  GV +      W+ +  S +  + G   +L L   + G+ + L  +  I  +++S LS
Sbjct: 673 ITFGVKVDEDTKRWI-KNRSGIHLEGGTGKYLGLPENLSGSKQDLFGY--IKEKLQSHLS 729

Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
           GW  + LS GG+ +LLKS+  +LPVY ++ F+ P G+ + + S+ ++F+       E + 
Sbjct: 730 GWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFW---WNSMEFSN 786

Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGG 296
           KI W+  + + L K  GG G + L+ FN ALL K  WR+  D   +  ++  +RY     
Sbjct: 787 KIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTD 846

Query: 297 RLEV-GGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSDR 347
            L    G   S  W  +   R+ +  G        + R +G+G  T+ W D+
Sbjct: 847 FLNARQGTRPSYTWRSILYGRELLNGG--------LKRLIGNGEQTNVWIDK 890


>At2g05980 putative non-LTR retroelement reverse transcriptase
          Length = 1352

 Score =  160 bits (405), Expect = 2e-39
 Identities = 113/349 (32%), Positives = 177/349 (50%), Gaps = 23/349 (6%)

Query: 4    WIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVM-KSLVEAQL 62
            WI+ C+ TA+ SV VNG  +  F  +RGLRQG  LSP+L+++    L+ ++ K+ VE ++
Sbjct: 775  WIELCIGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKI 834

Query: 63   FSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSMLV 122
               Y     N + ++HL FADD ++    +  +++   A    F AMS LK++  KS + 
Sbjct: 835  --SYHPRCRN-MNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIF 891

Query: 123  GVNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWNSRF 182
               I  +           ++G +P  YL +P+         + P+V +I++R++ W +RF
Sbjct: 892  MAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRF 951

Query: 183  LSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKISWLS 242
            LSF GRL L+KSVL+S+  + LS F+ P   +  I+ +F  F      G + N K + ++
Sbjct: 952  LSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFL---WSGPDLNTKKAKIA 1008

Query: 243  WQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVL---VARYGELGGRLE 299
            W  VC  KE GGLG++ LKE N   L K  WR+L  R  LW + +   + R        E
Sbjct: 1009 WSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKE 1068

Query: 300  VGGRSVSCWWSEVRRLRDGVGDGGSGWFGDQVLRR--VGDGVVTSFWSD 346
              G   S  W ++ + RD            ++  R  V  G  TSFW D
Sbjct: 1069 NTGLG-SWLWRKILKQRDKA----------RLFHRMEVRSGTFTSFWHD 1106


>At4g09710 RNA-directed DNA polymerase -like protein
          Length = 1274

 Score =  158 bits (400), Expect = 8e-39
 Identities = 112/352 (31%), Positives = 169/352 (47%), Gaps = 28/352 (7%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W +W+ +CV T + S L+NGSP       RGLRQGDPLSP+LF+L  E L+ + +   E 
Sbjct: 543 WIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEK 602

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
            +  G  +   +P  V+HL FADDT+     +     AL   L  +E  SG  +N  KS 
Sbjct: 603 GVMVGIRVARGSP-QVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSA 661

Query: 121 LVGVNIGSSWLYEAASVLSCKV----GIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
           +   +     +      LS ++    GI    YL +P     R+   +  IV+RI+ R  
Sbjct: 662 ITFSSKTPQDIKRRVK-LSLRIDNEGGIGK--YLGLPEHFGRRKRDIFSSIVDRIRQRSH 718

Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
            W+ RFLS  G+ +LLK+VL+S+P YA+  FK P  +   I S+   F+        D R
Sbjct: 719 SWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFW---WDSKPDKR 775

Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARYGELGG 296
           K++W+SW  + L    GGLG R+++        K  WR+L +   L  RVL+ +Y     
Sbjct: 776 KMAWVSWDKLTLPINEGGLGFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNTSS 828

Query: 297 RLEVGGRS--VSCWWSEVRRLRDGVGDGGSGWFGDQVLRRVGDGVVTSFWSD 346
            ++        S  W  +   RD +   G GW        +G G   + W++
Sbjct: 829 FMDCSASPSFASHGWRGILAGRDLLRK-GLGW-------SIGQGDSINVWTE 872


>At1g31030 F17F8.5
          Length = 872

 Score =  158 bits (399), Expect = 1e-38
 Identities = 115/355 (32%), Positives = 163/355 (45%), Gaps = 40/355 (11%)

Query: 4   WIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEAQLF 63
           WI  C++TA+ SV VNG     F  KRGLRQG  LSP+LF++  + L+ ++      + F
Sbjct: 275 WINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKF 334

Query: 64  SGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSMLVG 123
             +       + ++HL FADD ++L      ++  +      F   SGL+++  KS L  
Sbjct: 335 GFHP--KCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYM 392

Query: 124 VNIGSSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLSGWNSRFL 183
             +      E A+     VG +P  YL +P+         + P++ +IK R++ W  RF 
Sbjct: 393 AGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFF 452

Query: 184 SFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNRKISWLSW 243
           SF GR  L+KSVL S+  + L+ F+ P   I  ID L  +F   G   S    KI   SW
Sbjct: 453 SFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKI---SW 509

Query: 244 QTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY------------ 291
             VC  K  GGLG+R LKE N     K  WR++ +   LW +  VA Y            
Sbjct: 510 DIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTK-WVAEYLIRKKSIWSLKQ 568

Query: 292 ------------------GELGGRLEVG-GRSVSCW---WSEVRRLRDGVGDGGS 324
                              +   R+EVG G S S W   WS   RL D VGD G+
Sbjct: 569 STSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGT 623


>At2g41580 putative non-LTR retroelement reverse transcriptase
          Length = 1094

 Score =  156 bits (394), Expect = 4e-38
 Identities = 100/295 (33%), Positives = 153/295 (50%), Gaps = 11/295 (3%)

Query: 1   WRKWIKECVSTATASVLVNGSPTDEFPLKRGLRQGDPLSPFLFLLAAEGLNIVMKSLVEA 60
           W  W+  CVS+ + SVL+NG P       RGLRQGDPLSPFLF+L  E L  ++    + 
Sbjct: 331 WINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKI 390

Query: 61  QLFSGYSIGAANPIVVSHLQFADDTLLLGSKSWANVRALRAALVLFEAMSGLKVNFHKSM 120
              SG       P  V+HL FADDTLL+   S      +   L  +  +SG  +N  KS 
Sbjct: 391 GKISGIQFNGTGP-SVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEKSA 449

Query: 121 LV-GVNIG---SSWLYEAASVLSCKVGIVPFLYLDMPIGGNPRRLCFWEPIVNRIKSRLS 176
           +  G  +      W+   + +   + G   +L L     G+ + L  +  I  +++SRLS
Sbjct: 450 ITFGAKVNEETKQWIMNRSGI-QTEGGTGKYLGLPECFQGSKQVLFGF--IKEKLQSRLS 506

Query: 177 GWNSRFLSFGGRLVLLKSVLTSLPVYALSFFKAPTGIISSIDSLFINFFLGGGGGSEDNR 236
           GW ++ LS GG+ +LLKS+  + PVYA++ F+    + + + S+ ++F+       +D +
Sbjct: 507 GWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFW---WNSVQDKK 563

Query: 237 KISWLSWQTVCLKKECGGLGVRKLKEFNLALLGKWCWRMLVDRGGLWYRVLVARY 291
           KI W+  Q + L K  GG G + L+ FN ALL K   R+  D   L  ++L +RY
Sbjct: 564 KIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRY 618


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.348    0.155    0.570 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,300,949
Number of Sequences: 26719
Number of extensions: 553767
Number of successful extensions: 2418
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2167
Number of HSP's gapped (non-prelim): 101
length of query: 624
length of database: 11,318,596
effective HSP length: 105
effective length of query: 519
effective length of database: 8,513,101
effective search space: 4418299419
effective search space used: 4418299419
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 63 (28.9 bits)