BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134521.1 - phase: 0 /pseudo
         (324 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g20030 unknown protein                                              33  0.27
At5g33441 cytochrome P450-like protein                                 29  3.0
At4g04420 putative transposon protein                                  28  5.2
At5g62180 putative protein                                             28  6.8
At1g53200 hypothetical protein; similar to EST gb|AI997566.1           28  6.8

>At5g20030 unknown protein
          Length = 326

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 225 TSHLPRPSIRPEPIPWSQKLMTWTPKDIIWFNPSCDPEFIIDS 267
           T  +PR S+RPEP P  Q L  W P DI+    SC  +  I S
Sbjct: 45  TERVPRKSMRPEP-PRLQVLDAWCPGDILEVFQSCSWKMAIVS 86


>At5g33441 cytochrome P450-like protein
          Length = 459

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 10/34 (29%), Positives = 15/34 (43%)

Query: 222 RWITSHLPRPSIRPEPIPWSQKLMTWTPKDIIWF 255
           RW+ S  P       P PW  +   W  ++ +WF
Sbjct: 39  RWLKSLRPDKKTNQGPCPWYARERPWYARECLWF 72


>At4g04420 putative transposon protein
          Length = 1008

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 107 KIPTIAKALHLEVADIKDKFTTKDGLPCLPYNFLHQKATTCFEKSKTD--DFESILALL 163
           KI  IA   H      KDK   K  L CLP  F   K T       TD  DFE ++ +L
Sbjct: 149 KISAIASEAHNLGKKYKDKKLVKKLLRCLPSRF-ESKRTAMGTSLDTDSIDFEEVVGML 206


>At5g62180 putative protein
          Length = 327

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 208 HGKGTIVCCTPL---------LHRWITSHLPRPSIRPEPIPWSQKLMTWTPKDIIWFNPS 258
           HG G I+C   +         + R + + +  PS R  P            + + W   S
Sbjct: 87  HGGGFILCSVDMQLFHDFCSEVARDLNAIVVSPSYRLAPEHRLPAAYDDGVEALDWIKTS 146

Query: 259 CDPEFIIDSCGDFNNVPLLGTQGGISYSPILARRQFEYYTEMKPVY---LILDRDFF 312
            D E+I  S  DF+NV L+GT  G + +  +  R  +  +++ P+    LIL   FF
Sbjct: 147 -DDEWI-KSHADFSNVFLMGTSAGGNLAYNVGLRSVDSVSDLSPLQIRGLILHHPFF 201


>At1g53200 hypothetical protein; similar to EST gb|AI997566.1
          Length = 613

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 14/94 (14%)

Query: 232 SIRPEPIPWSQKLMTWTPKDIIWFNPSCDPEFIIDSCGDFNNVPLLGTQGGISYSPILAR 291
           S+R  P P +    +WT +   W N    P+ +     +  NV L G    ++Y    A 
Sbjct: 514 SVRYNPTPKTFTKTSWTLRAKWWLNRHFSPQMLET---EIKNVTLTGDWEMMTYKAACAS 570

Query: 292 ----RQFEYYTEMKPVYLIL----DRDFFLYKKD 317
               R+F Y T+   VY +L     R+FF + ++
Sbjct: 571 YIYGREFGYVTK---VYELLKSSNKREFFKFLRE 601


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.324    0.144    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,089,175
Number of Sequences: 26719
Number of extensions: 382761
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 5
length of query: 324
length of database: 11,318,596
effective HSP length: 99
effective length of query: 225
effective length of database: 8,673,415
effective search space: 1951518375
effective search space used: 1951518375
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)