BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134322.1 + phase: 0 /pseudo
(413 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16680 putative non-LTR retroelement reverse transcriptase 129 2e-30
At2g17910 putative non-LTR retroelement reverse transcriptase 127 1e-29
At1g47910 reverse transcriptase, putative 123 2e-28
At2g01840 putative non-LTR retroelement reverse transcriptase 120 1e-27
At2g45230 putative non-LTR retroelement reverse transcriptase 112 3e-25
At2g15510 putative non-LTR retroelement reverse transcriptase 104 8e-23
At3g45550 putative protein 103 2e-22
At2g41580 putative non-LTR retroelement reverse transcriptase 102 3e-22
At4g09710 RNA-directed DNA polymerase -like protein 102 5e-22
At4g29090 putative protein 97 2e-20
At2g15540 putative non-LTR retroelement reverse transcriptase 93 3e-19
At3g25270 hypothetical protein 91 9e-19
At5g20800 putative protein 90 3e-18
At2g17610 putative non-LTR retroelement reverse transcriptase 89 3e-18
At2g05200 putative non-LTR retroelement reverse transcriptase 87 1e-17
At1g24640 hypothetical protein 85 6e-17
At3g09510 putative non-LTR reverse transcriptase 85 8e-17
At2g25550 putative non-LTR retroelement reverse transcriptase 85 8e-17
At3g31420 hypothetical protein 84 2e-16
At1g29650 reverse transcriptase, putative 83 3e-16
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 129 bits (325), Expect = 2e-30
Identities = 107/416 (25%), Positives = 173/416 (40%), Gaps = 53/416 (12%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESING-NIPGGSYIHDFTVQNLLSQ 59
RSIL R ++ GG + IG+G + WL +G S N+ IH V +L+
Sbjct: 861 RSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIH-MKVSHLIDP 919
Query: 60 HGKSWNEPLVQQMFSNDIAEAILHT-PLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEEL 118
++WN + ++F + I+H PL + C W NG Y+V+S Y E
Sbjct: 920 LTRNWNLKKLTELFHEKDVQLIMHQRPLISSEDSYC--WAGTNNGLYTVKSGYERSSRET 977
Query: 119 I-------DVSHLRRPGNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNC 171
DV P + +W L+ PK+K +W +G L RL+ +G+ C
Sbjct: 978 FKNLFKEADVYPSVNP-LFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGC 1036
Query: 172 ESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQN--LSRNI 229
C + E +NHLLF+CPF+ VW + I S N + QN + R++
Sbjct: 1037 LFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHM 1096
Query: 230 KQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQQ 289
+ W +WK+RN +++ S ++V +A +EE
Sbjct: 1097 RTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKA------YEEC---------------- 1134
Query: 290 *PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQRT 349
L ++AQ + S P+ H KW PP +G KCN+ A+S Q Q
Sbjct: 1135 ----NLWINAQEKSSG---------GVSPSEH---KWNPPPAGELKCNIGVAWSRQKQLA 1178
Query: 350 GIGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQWMQDMYFDNIDFELDS 405
G+ +RD +L + Q++ + + A++ M +FD + F S
Sbjct: 1179 GVSWVLRDSMGQVLLHSRRSYSQVYSLFDAKIKSWDWALESMDHFHFDKVTFAATS 1234
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 127 bits (318), Expect = 1e-29
Identities = 104/421 (24%), Positives = 173/421 (40%), Gaps = 70/421 (16%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIH-DFTVQNLLSQ 59
RSIL R ++ G R IG+G + WL +G + + +I+ D V L+
Sbjct: 887 RSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSN-RRPLNRRRFINVDLKVSQLIDP 945
Query: 60 HGKSWNEPLVQQMFSNDIAEAIL-HTPLYDQVTNDCLVWKAERNGCYSVRSAY------- 111
++WN +++ +F E IL PL+ + + C W NG YSV++ Y
Sbjct: 946 TSRNWNLNMLRDLFPWKDVEIILKQRPLFFKEDSFC--WLHSHNGLYSVKTGYEFLSKQV 1003
Query: 112 --RLYVEELIDVSHLRRPGNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPT 169
RLY E + S + IW L +PK++ LW G +P RL+ +G+
Sbjct: 1004 HHRLYQEAKVKPSV---NSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDD 1060
Query: 170 NCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQNLSRNI 229
C C ++E +NH+LFECP + VW + H + +N++++ + L
Sbjct: 1061 GCLMCDTENETINHILFECPLARQVW-------AITHLSSAGSEFSNSVYTNMSRLIDLT 1113
Query: 230 KQ-------RFAA--TCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPAT 280
+Q RF + W LWK+RN ++E + +VD+A +W A
Sbjct: 1114 QQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSA------- 1166
Query: 281 FLQEDVQQQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDA 340
Q H Q+ + + + KW PP G KCN+
Sbjct: 1167 ---------------QTHMQNDEKHLKI---------------TKWCPPLPGELKCNIGF 1196
Query: 341 AFSAQFQRTGIGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQWMQDMYFDNID 400
A+S Q +G +RD +L F+++ + A++ M +FD +
Sbjct: 1197 AWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALESMTHHHFDRVI 1256
Query: 401 F 401
F
Sbjct: 1257 F 1257
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 123 bits (309), Expect = 2e-28
Identities = 77/281 (27%), Positives = 133/281 (46%), Gaps = 14/281 (4%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
RS++ +R +V G +GSGA+I + + PW+ G V++L+
Sbjct: 693 RSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSR 752
Query: 61 GKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEELID 120
WN L++++F + I P+ + D L W + G Y+V+S Y +L +
Sbjct: 753 SNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNE 812
Query: 121 VSHLRRPGNWQ---HIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCESCGAD 177
+ L P +IW ++ PK+++ LW + GC+P L+ +G+ C C SCGA
Sbjct: 813 GTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGAS 872
Query: 178 HEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQNLSRNI-----KQR 232
E +NH LF+C + +W + Q +N+IF+ L +L I
Sbjct: 873 EESINHTLFQCHPARQIWALS------QIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAP 926
Query: 233 FAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEA 273
+ W +WK RN K++ENVD++ ++++ A W+EA
Sbjct: 927 YPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEA 967
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 120 bits (301), Expect = 1e-27
Identities = 102/424 (24%), Positives = 174/424 (40%), Gaps = 49/424 (11%)
Query: 2 SILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQHG 61
SI + +++ G R +G G T I + PWL G D V +L ++
Sbjct: 1254 SIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPAR--GPILDEDMKVADLWRENK 1311
Query: 62 KSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAY------RLYV 115
+ W+ + + + + + + L + D W RN Y+VRS Y L
Sbjct: 1312 REWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTE 1371
Query: 116 EELIDVSHLRRPGNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCESCG 175
EE+I+ P Q IW LK++PK+K+ +W G L T +L+++ + C+ C
Sbjct: 1372 EEIINPLEGDVPLK-QEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCC 1430
Query: 176 ADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQ---NLSRNIKQR 232
E +NH++F C ++ VW SA + +D+ I ILQ N + I
Sbjct: 1431 NADETINHIIFTCSYAQVVWRSANF--SGSNRLCFTDNLEENIRLILQGKKNQNLPILNG 1488
Query: 233 FAA--TCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQQ* 290
W LWK RN +++ +D +V +A +W E T+ T + + Q
Sbjct: 1489 LMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVE--TMVNDTAISHNTAQS- 1545
Query: 291 PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQRTG 350
++RP +W+ P G KCN D+ + T
Sbjct: 1546 ------------------------NDRPLSRSK-QWSSPPEGFLKCNFDSGYVQGRDYTS 1580
Query: 351 IGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQ--WMQD---MYFDNIDFELDS 405
G +RD + + + + Q + EALG HA+Q W++ ++F+ + EL +
Sbjct: 1581 TGWILRDCNGRVLHSGCAKLQQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTN 1640
Query: 406 KITR 409
I +
Sbjct: 1641 LINK 1644
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 112 bits (281), Expect = 3e-25
Identities = 101/428 (23%), Positives = 169/428 (38%), Gaps = 63/428 (14%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHD-------FTV 53
+SI ++ +++ G R IG+G TI + PW+ + S++ V
Sbjct: 909 KSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVV 968
Query: 54 QNLLSQHGKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRL 113
++LL G+ WN LV +F ++ E IL + T D W+ R+G YSV+S Y +
Sbjct: 969 KDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWV 1028
Query: 114 YVE---ELIDVSHLRRPGN---WQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSC 167
E + + + +P +Q IW L V PK+ + LW CL L + ++
Sbjct: 1029 MTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAR 1088
Query: 168 PTNCESCGADHEDLNHLLFECPFSIHVW-------NSAGIWHDVQHAAIHSDSAANTIFS 220
+C C + E +NHLLF+CPF+ W G W + +H + S
Sbjct: 1089 EKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHH------VLS 1142
Query: 221 ILQNLSRNIKQR--FAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQP 278
+ ++ W LWK+RN +++ + + QV+ +A + W QP
Sbjct: 1143 VHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEPQP 1202
Query: 279 ATFLQEDVQQQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNV 338
Q+ + + V KW PPS G KCN
Sbjct: 1203 -----------------QVTSSTRDRCV------------------KWQPPSHGWVKCNT 1227
Query: 339 DAAFSAQFQRTGIGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQWMQDMYFDN 398
D A+S G+G +R+ + + + V E L A+ + +
Sbjct: 1228 DGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRR 1287
Query: 399 IDFELDSK 406
+ FE DS+
Sbjct: 1288 VIFESDSQ 1295
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 104 bits (260), Expect = 8e-23
Identities = 87/376 (23%), Positives = 164/376 (43%), Gaps = 49/376 (13%)
Query: 2 SILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIH---DFTVQNLLS 58
SIL R ++ G R +G+G ++ + PW+ + I +P + D V +L++
Sbjct: 686 SILFGRELLAKGLRKEVGNGKSLNVWMDPWIFD---IAPRLPLQRHFSVNLDLKVNDLIN 742
Query: 59 QHGKSWNEPLVQQMF-SNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVE- 116
+ W L++++F D+ P+ + +D VW + G YSV+S Y L +
Sbjct: 743 FEDRCWKRDLLEELFYPTDVELITKRNPVVNM--DDFWVWLHAKTGEYSVKSGYWLAFQS 800
Query: 117 ---ELIDVSHLRRPGNW--QHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNC 171
+LI ++L N + +W K SPK+K LW + LP ++ +G+S C
Sbjct: 801 NKLDLIQQANLLPSTNGLKEQVWSTKSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRC 860
Query: 172 ESCGADHEDLNHLLFECPFSIHVWNSAGI---WHDVQHAAIHSDSAANTIFSILQNLSRN 228
+ CG + E NH+LF C + VW +G+ Q+A+I ++ + +
Sbjct: 861 QICGDEGESTNHVLFTCSMARQVWALSGVPTPEFGFQNASIFANIQFLFELKKMILVPDL 920
Query: 229 IKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQ 288
+K+ + W LWK+RN ++ + + + + + +W +A Q ++
Sbjct: 921 VKRSWPWVLWRLWKNRNKLFFDGITFCPLNSIVKIQEDTLEWFQA---------QSQIRV 971
Query: 289 Q*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQR 348
++ Q +P H+ W PP G KCN+ +A+S + +
Sbjct: 972 S--------ESEEGQRVIPF-THS-------------WEPPPEGWVKCNIGSAWSGKKKV 1009
Query: 349 TGIGVCIRDDS*TFVL 364
G +RD+ + +L
Sbjct: 1010 CGGAWVLRDEHGSVIL 1025
>At3g45550 putative protein
Length = 851
Score = 103 bits (256), Expect = 2e-22
Identities = 90/361 (24%), Positives = 143/361 (38%), Gaps = 58/361 (16%)
Query: 2 SILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHD-----FTVQNL 56
S+L ++R G R+ IG G TI + +++ + P + D ++ NL
Sbjct: 531 SLLSGIALLRKGTRYVIGDGKTIRL-------GIDNVVDSHPPRPLLTDEQHNGLSLDNL 583
Query: 57 LSQHGKS--WNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLY 114
G S W+ +Q + I L + D L+W G Y+VRS Y L
Sbjct: 584 FQHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGYWLS 643
Query: 115 VEELID-VSHLRRPGNW----QHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPT 169
+ + + + +P IW L + PK+K+ LW + LPT RL +G+
Sbjct: 644 THDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDP 703
Query: 170 NCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSI---LQNLS 226
C C ++E +NH LF CPF+ W + + ++I S++ + I +I LQN +
Sbjct: 704 GCPRCRRENESINHALFTCPFATMAWRLSDT--PLYRSSILSNNIEDNISNILLLLQNTT 761
Query: 227 RNIKQRFAA--TCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQE 284
Q+ W +WK RN ++ N+ E+ V RA+ +W A Q L +
Sbjct: 762 ITDSQKLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQTQGPRRLPK 821
Query: 285 DVQQQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSA 344
R GN W P KCN DA+F+
Sbjct: 822 --------------------------------RTTAAGNTTWVKPQMPYIKCNFDASFNV 849
Query: 345 Q 345
Q
Sbjct: 850 Q 850
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 102 bits (255), Expect = 3e-22
Identities = 92/413 (22%), Positives = 162/413 (38%), Gaps = 55/413 (13%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
+SIL R ++ G + IG+G + W+ + + V L+
Sbjct: 638 QSILYGRELLVSGLKKIIGNGENTYVWMDNWIFDDKPRRPESLQIMVDIQLKVSQLIDPF 697
Query: 61 GKSWNEPLVQQMFS-NDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRL---YVE 116
++WN +++ +F +I P+ + + C W +G Y+V+S Y L V
Sbjct: 698 SRNWNLNMLRDLFPWKEIQIICQQRPMASRQDSFC--WFGTNHGLYTVKSEYDLCSRQVH 755
Query: 117 ELIDVSHLRRPGN---WQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCES 173
+ + +P + IW L +PK+K LW + +G + RL+ +GV C
Sbjct: 756 KQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDGCSM 815
Query: 174 CGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQN-----LSRN 228
C +E LNH+LF+CP + VW + H DS + ++ N LS +
Sbjct: 816 CPEKNETLNHILFQCPLARQVWALTPM-QSPNHG--FGDSIFTNVNHVIGNCHNTELSPH 872
Query: 229 IKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQ 288
++ W LWK+RN +++E + S+ +V +A +W +A L + +D
Sbjct: 873 LRYVSPWIIWILWKNRNKRLFEGIGSVSLSIVGKALEDCKEWLKAHELICSKEPTKD--- 929
Query: 289 Q*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQR 348
L W PP KCN+ A+S + Q
Sbjct: 930 -----------------------------------LTWIPPLMNELKCNIGIAWSKKHQM 954
Query: 349 TGIGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQWMQDMYFDNIDF 401
G+ +R+ +L F Q+ + G +A++ M FD + F
Sbjct: 955 AGVSWVVRNWKGRVLLHSRCSFSQISSHFDAKIKGWNYAVESMDQFKFDRVTF 1007
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 102 bits (253), Expect = 5e-22
Identities = 82/288 (28%), Positives = 118/288 (40%), Gaps = 30/288 (10%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
R IL R ++R G WSIG G +I + WL+ P D +V +L+
Sbjct: 844 RGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHD 903
Query: 61 GKSWNEPLVQQMFSNDIAEAILHTPLY-DQVTN---------DCLVWKAERNGCYSVRSA 110
KSWN +++ H P Y DQ+ D LVW ++G Y+ ++
Sbjct: 904 VKSWNVEAIRK-----------HLPQYEDQIRKITINALPLQDSLVWLPVKSGEYTTKTG 952
Query: 111 YRLYVEELIDVSHLRRPGNWQ-HIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPT 169
Y L S L NWQ +IW + SPKVK+ LW +G LP L + +
Sbjct: 953 YALAKLNSFPASQL--DFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEV 1010
Query: 170 NCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTI----FSILQNL 225
C+ CG L HL+ CP++ VW A + + A HS A + L
Sbjct: 1011 TCKRCGQTESSL-HLMLLCPYAKKVWELAPVLFNPSEAT-HSSVALLLVDAKRMVALPPT 1068
Query: 226 SRNIKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEA 273
+ W LWK RN I++N + +V +A W EA
Sbjct: 1069 GLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARAWMEA 1116
>At4g29090 putative protein
Length = 575
Score = 97.1 bits (240), Expect = 2e-20
Identities = 96/426 (22%), Positives = 171/426 (39%), Gaps = 55/426 (12%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWL----ANGESINGNIPGGSYIHDFT---V 53
+SI S+ I+R GAR +G+G I I WL A+ +P Y + V
Sbjct: 112 KSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKV 171
Query: 54 QNLLSQHGKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRL 113
+L+ + G+ W + +++ +F + I + D W +G Y+V+S Y +
Sbjct: 172 SDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWV 231
Query: 114 YVEELI------DVSHLRRPGNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSC 167
+ + +VS +Q IW + SPK+++ LW LP L + +S
Sbjct: 232 LTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSK 291
Query: 168 PTNCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQNLSR 227
+ C C + E +NHLLF+C F+ W + I + +DS ++ + NL
Sbjct: 292 ESACIRCPSCKETVNHLLFKCTFARLTWAISSI--PIPLGGEWADSIYVNLYWVF-NLGN 348
Query: 228 NIKQRFAAT------CWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATF 281
Q A+ W LWK+RN ++ + N+ +V+ RA + + +W
Sbjct: 349 GNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEW----------- 397
Query: 282 LQEDVQQQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAA 341
++ + + Q + R W PP KCN DA
Sbjct: 398 --------------RIRTEAESCGTKPQVNRSSCGR--------WRPPPHQWVKCNTDAT 435
Query: 342 FSAQFQRTGIGVCIRDDS*TFVLAKVLQFDQLFPVAIGEALGLYHAMQWMQDMYFDNIDF 401
++ +R GIG +R++ +L V E + A+ + ++ + F
Sbjct: 436 WNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIF 495
Query: 402 ELDSKI 407
E DS++
Sbjct: 496 ESDSQV 501
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 92.8 bits (229), Expect = 3e-19
Identities = 76/294 (25%), Positives = 128/294 (42%), Gaps = 20/294 (6%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLAN-----GESINGNIPGGSYIHDFTVQN 55
RSI+ ++ ++ G R +IGSG + + PW+ + +SI Y++D
Sbjct: 789 RSIMAAKPLLLSGLRRTIGSGMLTRVWEDPWIPSFPPRPAKSILNIRDTHLYVND----- 843
Query: 56 LLSQHGKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYV 115
L+ K W +Q++ IL +D W ++G Y+V+S Y
Sbjct: 844 LIDPVTKQWKLGRLQELVDPSDIPLILGIRPSRTYKSDDFSWSFTKSGNYTVKSGYWAAR 903
Query: 116 EELIDVSHLRRPGN-----WQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTN 170
+ L G +W +K + K K+ W GCL T RL + +
Sbjct: 904 DLSRPTCDLPFQGPSVSALQAQVWKIKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKV 963
Query: 171 CESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQ----NLS 226
C CGA+ E +NHLLF CP S +W + I ++ + N F + + +++
Sbjct: 964 CPRCGAEEESINHLLFLCPPSRQIWALSPI-PSSEYIFPRNSLFYNFDFLLSRGKEFDIA 1022
Query: 227 RNIKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPAT 280
+I + F W +WK RN I+ENV E+ ++D A W++A + + AT
Sbjct: 1023 EDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEANVWKQANSKEVAT 1076
>At3g25270 hypothetical protein
Length = 343
Score = 91.3 bits (225), Expect = 9e-19
Identities = 70/276 (25%), Positives = 114/276 (40%), Gaps = 29/276 (10%)
Query: 133 IWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCESCGADHEDLNHLLFECPFSI 192
IW LK +PK+K+ LW + G L T L+ + + C C + E HL F+C ++
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 193 HVWNSAGIWH-DVQHAAIHSDSAANTIF-SILQNLSRNIKQRFAATCWSLWKHRNLKIWE 250
VW ++GI H +++ I ++ + S L N + W LWK RN +++
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 251 NVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQQ*PAVPLQLHAQHQQSAVPLQA 310
+ + RARN + +WE+ T++Q ++ Q
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDT-----NTYVQ---------------------SLNQQV 171
Query: 311 HAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQRTGIGVCIRDDS*TFVLAKVLQF 370
H+ H +P KW P S K N D AF+ Q + G +RD++ ++ +
Sbjct: 172 HSSRHQQPT-MARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIG 230
Query: 371 DQLFPVAIGEALGLYHAMQWMQDMYFDNIDFELDSK 406
E L AMQ + + FE DSK
Sbjct: 231 STTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSK 266
>At5g20800 putative protein
Length = 359
Score = 89.7 bits (221), Expect = 3e-18
Identities = 63/263 (23%), Positives = 113/263 (42%), Gaps = 35/263 (13%)
Query: 30 PWLANGESINGNIPGGSYIHDFTVQNLLSQHGKSWNEPLVQQMFS-NDIAE-AILHTPLY 87
PW++ G V NL+ + W ++ ++F NDI + LH
Sbjct: 20 PWISAQFPRPAKSNGSVIDPSLKVSNLIDRRSNFWKMDILHEIFDPNDIPLISALHVGAP 79
Query: 88 DQVTNDCLVWKAERNGCYSVRSAYRLYVEELIDVSHLRRPGNW-----QHIWYLKVSPKV 142
++ D L W ++G Y+ +S Y E ID ++L G + W ++ PK+
Sbjct: 80 NK--EDTLGWHFTKSGKYTFKSGYHTSRIEYID-TNLSFIGPEITLLKAYSWKVQCPPKL 136
Query: 143 KNLLWCMCRGCLPT*VRLQDKGVSCPTNCESCGADHEDLNHLLFEC------------PF 190
++ LW + C+P L+ +G++C C CGA + +NH LF+C P
Sbjct: 137 RHFLWQILASCVPVRENLRKRGINCDIGCARCGATEKTINHTLFQCHPARQIWALSQIPT 196
Query: 191 SIHVWNSAGIWHDVQHAAIHSDSAANTIFSILQNLSRNIKQRFAATCWSLWKHRNLKIWE 250
I ++ S I+ ++ H SA ++ + W +WK RN K+++
Sbjct: 197 VIGIFPSDSIYENLDHLFWRVQSAVDSF-------------SYPWIIWYIWKARNAKLFD 243
Query: 251 NVDENSVQVVDRARNLIADWEEA 273
NVD++ + ++ A W+ A
Sbjct: 244 NVDKDPLDILSLAEKEAQSWKSA 266
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 89.4 bits (220), Expect = 3e-18
Identities = 83/312 (26%), Positives = 126/312 (39%), Gaps = 27/312 (8%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
+SIL ++ G ++ G+G I + WL S V +LL +
Sbjct: 364 KSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDLLIEG 423
Query: 61 GKSWNEPLVQQMF-SNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEELI 119
WNE L+ ++ NDI P ND + W +G YSV+S Y L + +L
Sbjct: 424 --RWNEDLLCKLIHQNDIPHIRAIRPSITGA-NDAITWIYTHDGNYSVKSGYHL-LRKLS 479
Query: 120 DVSHLRRPGN--------WQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNC 171
H P + +IW PK+K+ W LPT L+ + + C
Sbjct: 480 QQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTC 539
Query: 172 ESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAANTIFSI--LQNLSRNI 229
+ CG ED+NHLLF+C S +W A I ++ S+S + SI L +R
Sbjct: 540 QRCGEASEDVNHLLFQCRVSKEIWEQAHI-KLCPGDSLMSNSFNQNLESIQKLNQSARKD 598
Query: 230 KQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQQ 289
F W +WK RN I+ N + + +A W+E++ + QQ+
Sbjct: 599 VSLFPFIGWRIWKMRNDLIFNNKRWSIPDSIQKALIDQQQWKESLNC-------NEQQQR 651
Query: 290 *PAVPLQLHAQH 301
P QLH H
Sbjct: 652 KP----QLHDSH 659
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 87.4 bits (215), Expect = 1e-17
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 5/199 (2%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
RSI+ R I++ G W I +G + I + PWL+ + + P D V L++Q+
Sbjct: 804 RSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQN 863
Query: 61 GKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEELID 120
W+ + + N I P D L W ++G Y+ RS Y + I
Sbjct: 864 TLQWDWNKIAVILPN-YENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIASVASIP 922
Query: 121 VSHLRRPGNWQ-HIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCESCGADHE 179
+ + NWQ ++W L+ PK+K+L+W LP ++L + +S C CGA E
Sbjct: 923 IPQTQF--NWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRCGAP-E 979
Query: 180 DLNHLLFECPFSIHVWNSA 198
HL F C F+ VW A
Sbjct: 980 STTHLFFHCEFAAQVWELA 998
>At1g24640 hypothetical protein
Length = 1270
Score = 85.1 bits (209), Expect = 6e-17
Identities = 77/298 (25%), Positives = 126/298 (41%), Gaps = 66/298 (22%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESING-NIPGG-SYIHDFT--VQNL 56
RSIL R ++ G + +G GA++ + PW+ + NG P + I+D T V+ L
Sbjct: 872 RSILFGRELLSKGLQKRVGDGASLFVWIDPWIDD----NGFRAPWRKNLIYDVTLKVKAL 927
Query: 57 LSQHGKSWNEPLVQQMF-SNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYV 115
L+ W+E ++ +F DI P+ Q D VWK ++G +SV+SAY L
Sbjct: 928 LNPRTGFWDEEVLHDLFLPEDILRIKAIKPVISQA--DFFVWKLNKSGDFSVKSAYWLAY 985
Query: 116 EELIDVSHLRRPGNWQ--------HIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSC 167
+ +LR + Q +W L+ PK+K LW
Sbjct: 986 QT--KSQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLW-------------------- 1023
Query: 168 PTNCESCGADHEDLNHLLFECPFSIHVW------------NSAGIWHDVQHAAIHSDSAA 215
+ CG E NH LF CP S +W ++ I+ ++ H + D+
Sbjct: 1024 ----KVCGELGESTNHTLFLCPLSRQIWALSDYPFPPDGFSNGSIYSNINHLLENKDNKE 1079
Query: 216 NTIFSILQNLSRNIKQRFAATCWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEA 273
I N+++ F W +WK+RN I+E + + V + R+ + +W EA
Sbjct: 1080 WPI---------NLRKIFPWILWRIWKNRNSFIFEGISYPATDTVIKIRDDVVEWFEA 1128
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 84.7 bits (208), Expect = 8e-17
Identities = 86/374 (22%), Positives = 138/374 (35%), Gaps = 60/374 (16%)
Query: 2 SILRSRFIVRGGARWSIGSGATIPI-LDT------PWLANGESINGNIPGGSYIHDFTVQ 54
S+L +++ G R IG G I I LD P N E + T+
Sbjct: 26 SLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEET---------YKEMTIN 76
Query: 55 NLLSQHGKS--WNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYR 112
NL + G W++ + Q I L D ++W G Y+VRS Y
Sbjct: 77 NLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYW 136
Query: 113 LYVEE-LIDVSHLRRPGNW----QHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSC 167
L + ++ + P IW L + PK+K+ LW L T RL +G+
Sbjct: 137 LLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRI 196
Query: 168 PTNCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAAN--TIFSILQNL 225
+C C ++E +NH LF CPF+ W + +++ + +D N I + +Q+
Sbjct: 197 DPSCPRCHRENESINHALFTCPFATMAWRLSDS-SLIRNQLMSNDFEENISNILNFVQDT 255
Query: 226 SRNIKQRFAAT--CWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQ 283
+ + + W +WK RN ++ E+ + V A+ DW
Sbjct: 256 TMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDW------------- 302
Query: 284 EDVQQQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFS 343
L H+++ P R ++W P + KCN DA F
Sbjct: 303 -----------LNATQSHKKTPSP--------TRQIAENKIEWRNPPATYVKCNFDAGFD 343
Query: 344 AQFQRTGIGVCIRD 357
Q G IR+
Sbjct: 344 VQKLEATGGWIIRN 357
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 84.7 bits (208), Expect = 8e-17
Identities = 86/374 (22%), Positives = 138/374 (35%), Gaps = 60/374 (16%)
Query: 2 SILRSRFIVRGGARWSIGSGATIPI-LDT------PWLANGESINGNIPGGSYIHDFTVQ 54
S+L +++ G R IG G I I LD P N E + T+
Sbjct: 1292 SLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEET---------YKEMTIN 1342
Query: 55 NLLSQHGKS--WNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYR 112
NL + G W++ + Q I L D ++W G Y+VRS Y
Sbjct: 1343 NLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYW 1402
Query: 113 LYVEE-LIDVSHLRRPGNW----QHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSC 167
L + ++ + P IW L + PK+K+ LW L T RL +G+
Sbjct: 1403 LLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRI 1462
Query: 168 PTNCESCGADHEDLNHLLFECPFSIHVWNSAGIWHDVQHAAIHSDSAAN--TIFSILQNL 225
+C C ++E +NH LF CPF+ W + +++ + +D N I + +Q+
Sbjct: 1463 DPSCPRCHRENESINHALFTCPFATMAWRLSDS-SLIRNQLMSNDFEENISNILNFVQDT 1521
Query: 226 SRNIKQRFAAT--CWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQ 283
+ + + W +WK RN ++ E+ + V A+ DW
Sbjct: 1522 TMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDW------------- 1568
Query: 284 EDVQQQ*PAVPLQLHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFS 343
L H+++ P R ++W P + KCN DA F
Sbjct: 1569 -----------LNATQSHKKTPSP--------TRQIAENKIEWRNPPATYVKCNFDAGFD 1609
Query: 344 AQFQRTGIGVCIRD 357
Q G IR+
Sbjct: 1610 VQKLEATGGWIIRN 1623
>At3g31420 hypothetical protein
Length = 1491
Score = 83.6 bits (205), Expect = 2e-16
Identities = 84/367 (22%), Positives = 144/367 (38%), Gaps = 69/367 (18%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESINGNIPGGSYIHDFTVQNLLSQH 60
+SIL R +++ G R +G G+ I PWL +H
Sbjct: 1067 KSILHGRNLLKKGLRCCVGDGSLINAWLDPWLP--------------LH----------- 1101
Query: 61 GKSWNEPLVQQMFSNDIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYVEELID 120
S P Q+ D E +L + +D + W ++G Y+V+SAY L
Sbjct: 1102 --SPRAPYKQE----DAPEQLL---VCSTARDDLIGWHYTKDGMYTVKSAYWLATHLPGT 1152
Query: 121 VSHLRRPGNW---QHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCPTNCESCGAD 177
PG+ Q +W K +PK+K+ W + G + T L+ + ++ + C+ C D
Sbjct: 1153 TGTHPPPGDIKLKQLLWKTKTAPKIKHFCWKILSGAIATGEMLRYRHINKQSICKRCCRD 1212
Query: 178 HEDLNHLLFECPFSIHVWNSAGIWHDV-QHAAIHSDSAANTIFSILQNLSRNIKQRFAAT 236
E HL FEC ++ W AG+ + + Q + + + +F+ + + +Q
Sbjct: 1213 EETSQHLFFECDYAKATWRGAGLPNLIFQDSIVTLEEKFRAMFTFNPSTTNYWRQLPFWI 1272
Query: 237 CWSLWKHRNLKIWENVDENSVQVVDRARNLIADWEEAITLQPATFLQEDVQQQ*PAVPLQ 296
W LW+ RN+ ++ V A+ +W++ +++ VQ P
Sbjct: 1273 LWRLWRSRNILTFQQKHIPWEVTVQLAKQDALEWQD---------IEDRVQVINPL---- 1319
Query: 297 LHAQHQQSAVPLQAHAHHHNRPAGHGNLKWTPPSSGRFKCNVDAAFSAQFQRTGIGVCIR 356
H NR A + +WT P G KCN D ++S + G IR
Sbjct: 1320 --------------SRRHSNRYAAN---RWTRPVCGWKKCNYDGSYST-IINSKAGWVIR 1361
Query: 357 DDS*TFV 363
D+ F+
Sbjct: 1362 DEHGQFI 1368
>At1g29650 reverse transcriptase, putative
Length = 1557
Score = 82.8 bits (203), Expect = 3e-16
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 19/200 (9%)
Query: 1 RSILRSRFIVRGGARWSIGSGATIPILDTPWLANGESING-NIPGGSYIH---DFTVQNL 56
RS+L R ++ G R IG+G +I + W+ N NG IP + + V++L
Sbjct: 1183 RSVLHGRDLLTKGLRKEIGNGNSISV----WMDNWIYDNGPRIPLQKHFSVSLNLRVKDL 1238
Query: 57 LSQHGKSWNEPLVQQMFSN-DIAEAILHTPLYDQVTNDCLVWKAERNGCYSVRSAYRLYV 115
++ G+ WN L+Q +F DI P+ D +D VW ++G YSV+S Y L
Sbjct: 1239 INLDGRCWNRDLLQDLFFQVDIDLICKKKPVVDM--DDFWVWLHSKSGEYSVKSGYWLVF 1296
Query: 116 E----ELIDVSHLRRP---GNWQHIWYLKVSPKVKNLLWCMCRGCLPT*VRLQDKGVSCP 168
+ EL+ R+P G + IW PK+K LW + LP ++ +G++
Sbjct: 1297 QSNKPELL-FKACRQPSTNGLKEKIWSTSTFPKIKLFLWRILSAALPVADQILRRGMNVD 1355
Query: 169 TNCESCGADHEDLNHLLFEC 188
C+ CG + E +NH+LF C
Sbjct: 1356 PCCQICGQEGESINHVLFTC 1375
Score = 32.0 bits (71), Expect = 0.64
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 325 KWTPPSSGRFKCNVDAAFSAQFQRTGIGVCIRDD 358
+W PP G KCNV A +S + + G +RDD
Sbjct: 1421 RWDPPPIGWVKCNVGAVWSGKKKLCGGSWVVRDD 1454
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.326 0.138 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,829,319
Number of Sequences: 26719
Number of extensions: 419426
Number of successful extensions: 1413
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 129
length of query: 413
length of database: 11,318,596
effective HSP length: 102
effective length of query: 311
effective length of database: 8,593,258
effective search space: 2672503238
effective search space used: 2672503238
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC134322.1