BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134049.5 + phase: 0
(162 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07550 putative retroelement pol polyprotein 92 2e-19
At2g21310 putative retroelement pol polyprotein 91 3e-19
At4g10460 putative retrotransposon 89 1e-18
At5g35820 copia-like retrotransposable element 88 2e-18
At2g19840 copia-like retroelement pol polyprotein 84 3e-17
At3g45520 copia-like polyprotein 80 5e-16
At1g37110 77 5e-15
At2g21460 putative retroelement pol polyprotein 74 5e-14
At1g47360 polyprotein, putative 70 4e-13
At2g13930 putative retroelement pol polyprotein 70 7e-13
At4g21360 putative transposable element 66 9e-12
At3g55300 putative protein 65 2e-11
At1g42380 hypothetical protein 64 3e-11
At4g04380 putative polyprotein 64 5e-11
At1g32590 hypothetical protein, 5' partial 54 5e-08
At3g28160 non-LTR reverse transcriptase, putative 48 2e-06
At3g60170 putative protein 48 3e-06
At1g36110 hypothetical protein 45 2e-05
At1g58140 hypothetical protein 44 5e-05
At1g48710 hypothetical protein 44 5e-05
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 91.7 bits (226), Expect = 2e-19
Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 18/144 (12%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGK-EGTVTLEEVQAALRT 64
EF +I+ DLEN+ V + DED+AILLL ALP++F+ KDT+ Y + +TL+EV AA+ +
Sbjct: 139 EFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSILTLDEVAAAIYS 198
Query: 65 KEL----------TKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKL 114
KEL +++ L + NE + G G+G +G SK K C+ C +
Sbjct: 199 KELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKGKSKK----KPGCWTCGEE 254
Query: 115 GHFKRDCPEDNE---SSAQVVSEE 135
GHF+ CP N+ +QVV E
Sbjct: 255 GHFRSSCPNQNKPQFKQSQVVKGE 278
>At2g21310 putative retroelement pol polyprotein
Length = 838
Score = 90.9 bits (224), Expect = 3e-19
Identities = 52/150 (34%), Positives = 87/150 (57%), Gaps = 10/150 (6%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
E + +F K++ DLEN++V + DED+AI+LL +LP+ F+ KDT+ YGK T+ L+E+ A
Sbjct: 132 ENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALDEITGA 190
Query: 62 LRTKEL---TKSKDLRADED-----NEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHK 113
+R+K L K L+ D + G S + R N+ S+S +++K C+ C K
Sbjct: 191 IRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSER-NKSQSRSKSREKKVCWVCGK 249
Query: 114 LGHFKRDCPEDNESSAQVVSEEYGDAGALV 143
GHFK+ C E + + + E G++ ++
Sbjct: 250 EGHFKKQCYVWKEKNKKGNNSEKGESSNVI 279
>At4g10460 putative retrotransposon
Length = 1230
Score = 88.6 bits (218), Expect = 1e-18
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 17/165 (10%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGK-EGTVTLEEVQAALRT 64
EF +++ DLEN V + DED+AILLL +LP+ F+ KDT+ YG T++++EV AA+ +
Sbjct: 137 EFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLSVDEVVAAIYS 196
Query: 65 KEL---TKSKDLRAD---------EDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCH 112
KEL + K +R + G+S K +GN+G S+S +K C+ C
Sbjct: 197 KELELGSNKKSIRGQAEGLYVKDKPETRGMSEQK----EKGNKGRSRSRSKGWKGCWICG 252
Query: 113 KLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDEGEGSHL 157
+ GHFK CP + + + G G EG G ++
Sbjct: 253 EEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSEGSGYYV 297
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 88.2 bits (217), Expect = 2e-18
Identities = 62/162 (38%), Positives = 91/162 (55%), Gaps = 21/162 (12%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
E + +F K++ DLEN++V + DED+AI+LL +LPR F+ K+T+ Y K T+ LEE+ +A
Sbjct: 140 ENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYCKT-TLHLEEITSA 198
Query: 62 LRTKEL---TKSKDLRADED-----NEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHK 113
+R+K L K L+ + D + G S ++G G + N+ SKS K C+ C K
Sbjct: 199 IRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNK-NKSRSKSKGAGK-TCWICGK 256
Query: 114 LGHFKRDCPEDNESSAQVVSEEYG----------DAGALVVS 145
GHFK+ C E + Q + E G DA ALVVS
Sbjct: 257 EGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALVVS 298
>At2g19840 copia-like retroelement pol polyprotein
Length = 1137
Score = 84.0 bits (206), Expect = 3e-17
Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 12/160 (7%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
E + EF K++ DL N+++Q+ DE +AIL+L ALP S++ K+T+ YG+EG + L++V +A
Sbjct: 105 ENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREG-IKLDDVISA 163
Query: 62 LRTKEL-TKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRD 120
++KEL + + EGL V +G RG+ G + + K C+ C K GHFKR
Sbjct: 164 AKSKELELRDSSGGSRPVGEGLYV-RGKSQARGSDGPKST--EGKKVCWICGKEGHFKRQ 220
Query: 121 C---PEDNESS----AQVVSEEYGDAGALVVSCWEEDEGE 153
C E N+++ +V ++ D LV S EG+
Sbjct: 221 CYKWLEKNKANGAGETALVKDDAQDLVGLVASEVNMSEGK 260
>At3g45520 copia-like polyprotein
Length = 1363
Score = 80.1 bits (196), Expect = 5e-16
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 19/134 (14%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTV-TLEEVQAALRT 64
EF I+ DLEN+ V + DED+AILLL +LP+ F+ KDT+ Y TV +L+EV AA+ +
Sbjct: 139 EFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGKTVLSLDEVAAAIYS 198
Query: 65 KEL---TKSKDLRAD---------EDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCH 112
+EL + K ++ +N G S K G G+ ++ SK G C+ C
Sbjct: 199 RELEFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSKSKSKRG------CWICG 252
Query: 113 KLGHFKRDCPEDNE 126
+ GH K CP N+
Sbjct: 253 EDGHLKSTCPNKNK 266
>At1g37110
Length = 1356
Score = 76.6 bits (187), Expect = 5e-15
Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 22/177 (12%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
+ + EF +I+ +L ++E+Q+++E +AIL+L +LP S K T+ YG + T+T+++V ++
Sbjct: 143 QNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKYGNK-TLTVQDVTSS 201
Query: 62 LRT--KELTKSKDLRADE------DNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHK 113
++ +EL ++ DL + G + + N G +G S+S +K K C+ C K
Sbjct: 202 AKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSRSNSKTKVPCWYCKK 261
Query: 114 LGHFKRDC-------PEDNESSAQVVSEEYGDAGALVVS------CWEEDEGEGSHL 157
GH K+DC + + A V++E+ + AL V+ W D G SH+
Sbjct: 262 EGHVKKDCYSRKKKMESEGQGEAGVITEKLVFSEALSVNEQMVKDLWILDSGCTSHM 318
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 73.6 bits (179), Expect = 5e-14
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 13/162 (8%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYG-KEGTVTLEEVQAALRT 64
EF +I+ DLEN V + DED+AILLL +LP+ F+ +DT+ YG T++L+EV AA+ +
Sbjct: 139 EFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEVVAAIYS 198
Query: 65 KELTKSKDLRADEDN-EGLSV-----SKGNGGGRGNRGS---SKSGNKDKYKCFKCHKLG 115
KEL + ++ + EGL V ++G RGN + S+S ++ K C+ C G
Sbjct: 199 KELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSKSRSKKGCWIC---G 255
Query: 116 HFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDEGEGSHL 157
+E++ VSE + W D G H+
Sbjct: 256 ESSNGSSNYSEANGLYVSEALSSTDIHLEDEWVMDTGCSYHM 297
>At1g47360 polyprotein, putative
Length = 1182
Score = 70.5 bits (171), Expect = 4e-13
Identities = 45/137 (32%), Positives = 74/137 (53%), Gaps = 8/137 (5%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLY-GKEGTVTLEEVQA 60
E + +F KI+ DL ++++++ DE +AILLL +LP ++ +TM Y + L++V
Sbjct: 100 ENIDDFLKIVADLNHLQIEVTDEVQAILLLSSLPARYDGLVETMKYSNSREKLRLDDVMV 159
Query: 61 ALRTKELTKSKDLR-ADEDNEGLSVSKGNGGGRGNRGSSKSGNKD---KYKCFKCHKLGH 116
R KE S++ R E + +G +GN+G ++S +K K C+ C K GH
Sbjct: 160 GARDKERELSQNNRPVAEGHYARGRPEGKNNNQGNKGKNRSRSKSADGKRVCWICGKEGH 219
Query: 117 FKRDC---PEDNESSAQ 130
FK+ C E N+S Q
Sbjct: 220 FKKQCYKWLERNKSKQQ 236
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 69.7 bits (169), Expect = 7e-13
Identities = 46/137 (33%), Positives = 73/137 (52%), Gaps = 8/137 (5%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLY-GKEGTVTLEEVQA 60
E + +F KI+ DL ++++ + DE +AILLL +LP ++ +TM Y + L++V
Sbjct: 110 ENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNSREKLRLDDVMV 169
Query: 61 ALRTKELTKSKDLR-ADEDNEGLSVSKGNGGGRGNRGSSKSGNKD---KYKCFKCHKLGH 116
A R KE S++ R E + G +GN+G ++S +K K C+ C K GH
Sbjct: 170 AARDKERELSQNNRPVVEGHFARGRPDGKNNNQGNKGKNRSRSKSADGKRVCWICGKEGH 229
Query: 117 FKRDC---PEDNESSAQ 130
FK+ C E N+S Q
Sbjct: 230 FKKQCYKWIERNKSKQQ 246
>At4g21360 putative transposable element
Length = 1308
Score = 65.9 bits (159), Expect = 9e-12
Identities = 43/145 (29%), Positives = 85/145 (57%), Gaps = 13/145 (8%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRT- 64
EF +I+ +L ++++Q+ +E +AIL+L +LP S+ K T+ YG + T+++++V ++ ++
Sbjct: 149 EFLRIVAELGSLQIQVGEEVQAILILNSLPPSYIQLKHTLKYGNK-TLSVQDVVSSAKSL 207
Query: 65 -KELTKSKD-LRADEDNEGLSVSKG-----NGGGRGNRGSSKSGNKDKYKCFKCHKLGHF 117
+EL++ K+ +RA + +G N G+G +G +S +K + C+ C K GH
Sbjct: 208 ERELSEQKETIRAPASTALYTAERGRPQTKNTQGQG-KGRGRSNSKSRLTCWFCKKEGHV 266
Query: 118 KRDCPEDNESSAQVVSEEYGDAGAL 142
K+DC ++ +E G AG +
Sbjct: 267 KKDC---YAGKRKLENEGQGKAGVI 288
>At3g55300 putative protein
Length = 262
Score = 65.1 bits (157), Expect = 2e-11
Identities = 46/138 (33%), Positives = 72/138 (51%), Gaps = 17/138 (12%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGK-EGTVTLEEVQA 60
E L K++ DL ++++ DED+A+ + LP ++S DT+ YG + T+TL V +
Sbjct: 68 ENLDTSLKLVADLASLDINTSDEDQALQFMAGLPPQYDSLVDTLKYGSGKDTLTLNAVIS 127
Query: 61 ALRTKEL-TKSKDL----RADE-----DNEGLSVSKGN-----GGGRGNRGSSKSGNKDK 105
+ +KE+ K K L + D D +G S +KGN G GN G +S +
Sbjct: 128 SAYSKEIELKEKGLLNVSKPDSEALLGDFKGRSNNKGNKRPCTGSSSGN-GKFQSRPSNN 186
Query: 106 YKCFKCHKLGHFKRDCPE 123
CF C K H+KR+CP+
Sbjct: 187 TSCFICGKEDHWKRECPQ 204
>At1g42380 hypothetical protein
Length = 143
Score = 64.3 bits (155), Expect = 3e-11
Identities = 41/125 (32%), Positives = 65/125 (51%), Gaps = 5/125 (4%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLY-GKEGTVTLEEVQA 60
E + +F KI+ DL +I++++ DE +AILLL +LP ++ +TM Y + L +V
Sbjct: 9 ENIDDFLKIVVDLNHIQIEVRDEVQAILLLSSLPSRYDGLVETMKYSNSREKLRLNDVMV 68
Query: 61 ALRTKELTKSKDLR-ADEDNEGLSVSKGNGGGRGNRGSSKSGNKD---KYKCFKCHKLGH 116
A R KE S++ R E + G +GN+G ++S +K K C+ C K H
Sbjct: 69 AARDKEREMSQNNRLIAEGHYARRRPVGKNNNQGNKGKNRSWSKSADGKRVCWICGKEKH 128
Query: 117 FKRDC 121
F C
Sbjct: 129 FNEQC 133
>At4g04380 putative polyprotein
Length = 778
Score = 63.5 bits (153), Expect = 5e-11
Identities = 34/63 (53%), Positives = 45/63 (70%), Gaps = 1/63 (1%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTV-TLEEVQAALRT 64
EF I+ DLEN+ V + DED+ ILLL +LP+SF+ KDT+ Y TV TL+EV AA+ +
Sbjct: 108 EFLHIVADLENLNVLVSDEDQTILLLMSLPKSFDQLKDTLQYSSGKTVLTLDEVTAAIYS 167
Query: 65 KEL 67
KEL
Sbjct: 168 KEL 170
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 53.5 bits (127), Expect = 5e-08
Identities = 36/142 (25%), Positives = 64/142 (44%), Gaps = 16/142 (11%)
Query: 9 KILDDLENIEVQLEDE-----------DKAILLLCALPRSFESFKDTMLYGKEGTVTLEE 57
+I +D+ N+ + D +K ++CA+ S + K+ + G + ++ + E
Sbjct: 99 EITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEES-NNIKELTVDGLQSSLMVHE 157
Query: 58 VQAALRTKE--LTKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSG--NKDKYKCFKCHK 113
+ E + K++ + G S G GRG G N+D +CFKCHK
Sbjct: 158 QNLSRHDVEERVLKAETQWRPDGGRGRGGSPSRGRGRGGYQGRGRGYVNRDTVECFKCHK 217
Query: 114 LGHFKRDCPEDNESSAQVVSEE 135
+GH+K +CP + + V EE
Sbjct: 218 MGHYKAECPSWEKEANYVEMEE 239
>At3g28160 non-LTR reverse transcriptase, putative
Length = 630
Score = 48.1 bits (113), Expect = 2e-06
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 8 NKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRTKEL 67
NK L L+ + DE KA+ LL +LP F K+TM ++TL+ V A+ +KE
Sbjct: 431 NKRLQGLDREGEIVSDETKAMALLMSLPNQFSELKETM-QNSGISLTLDNVMRAIYSKEQ 489
Query: 68 TKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYK----CFKCHKLGHFKRDC 121
+ ++ + L R N+ K NK K K C+ HK GH + C
Sbjct: 490 EFDQFWEQAKERKVLDQRMNLSKLRANQEKEKKMNKSKAKGKKICWTDHKEGHSYKQC 547
>At3g60170 putative protein
Length = 1339
Score = 47.8 bits (112), Expect = 3e-06
Identities = 23/53 (43%), Positives = 33/53 (61%), Gaps = 6/53 (11%)
Query: 85 SKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCP--EDNESSAQVVSEE 135
S+G G GRG G+ N+ +C+KCH LGHF+ +CP E N + A++ EE
Sbjct: 233 SRGRGRGRGRSGT----NRAIVECYKCHNLGHFQYECPEWEKNANYAELEEEE 281
>At1g36110 hypothetical protein
Length = 745
Score = 45.1 bits (105), Expect = 2e-05
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 77 EDNEGLSVSKGNGGGRGNRGSSKS-GNKD--KYKCFKCHKLGHFKRDCPEDNESSAQVVS 133
+D+ S +G GGG RG + G++D K C++C KLGH+ +CP D+ + +
Sbjct: 214 QDSWYASRGRGQGGGFNGRGRGRGRGSRDTSKVTCYRCDKLGHYASNCP-DSVKPSVFET 272
Query: 134 EEYGDAGALVVSCWEEDEGEGSHL 157
E GD + W D G +H+
Sbjct: 273 ELDGD------NVWYLDNGASNHM 290
>At1g58140 hypothetical protein
Length = 1320
Score = 43.5 bits (101), Expect = 5e-05
Identities = 27/89 (30%), Positives = 43/89 (47%), Gaps = 9/89 (10%)
Query: 74 RADEDNEGLSVSKGNGGGRGN-RGSSKSG-NKDKYKCFKCHKLGHFKRDCPEDN----ES 127
R EDN +G RG +G KS +K KC+ C K GH+ +C + E
Sbjct: 248 RPHEDNTN---QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEE 304
Query: 128 SAQVVSEEYGDAGALVVSCWEEDEGEGSH 156
A V E+ + L+++ +++DE E +H
Sbjct: 305 KANYVEEKIQEEDMLLMASYKKDEQEENH 333
>At1g48710 hypothetical protein
Length = 1352
Score = 43.5 bits (101), Expect = 5e-05
Identities = 27/89 (30%), Positives = 43/89 (47%), Gaps = 9/89 (10%)
Query: 74 RADEDNEGLSVSKGNGGGRGN-RGSSKSG-NKDKYKCFKCHKLGHFKRDCPEDN----ES 127
R EDN +G RG +G KS +K KC+ C K GH+ +C + E
Sbjct: 248 RPHEDNTN---QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEE 304
Query: 128 SAQVVSEEYGDAGALVVSCWEEDEGEGSH 156
A V E+ + L+++ +++DE E +H
Sbjct: 305 KANYVEEKIQEEDMLLMASYKKDEQEENH 333
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.310 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,052,362
Number of Sequences: 26719
Number of extensions: 185977
Number of successful extensions: 1086
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 205
length of query: 162
length of database: 11,318,596
effective HSP length: 91
effective length of query: 71
effective length of database: 8,887,167
effective search space: 630988857
effective search space used: 630988857
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC134049.5