BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134049.15 + phase: 0 /pseudo
(300 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g13940 putative retroelement pol polyprotein 64 1e-10
At2g24660 putative retroelement pol polyprotein 63 2e-10
At2g07420 putative retroelement pol polyprotein 62 3e-10
At2g23330 putative retroelement pol polyprotein 62 4e-10
At4g23160 putative protein 61 8e-10
At4g22040 LTR retrotransposon like protein 61 8e-10
At4g04290 putative reverse transcriptase 61 8e-10
At1g57640 61 8e-10
At4g17450 retrotransposon like protein 60 1e-09
At2g16670 putative retroelement pol polyprotein 60 1e-09
At2g16000 putative retroelement pol polyprotein 58 5e-09
At2g07010 putative retroelement pol polyprotein 57 9e-09
At1g36620 hypothetical protein 57 9e-09
At1g70010 hypothetical protein 57 2e-08
At4g27210 putative protein 55 4e-08
At4g04410 putative polyprotein 55 5e-08
At4g10990 putative retrotransposon polyprotein 54 1e-07
At4g28900 putative protein 53 2e-07
At1g47650 hypothetical protein 53 2e-07
At2g20460 putative retroelement pol polyprotein 52 3e-07
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 63.9 bits (154), Expect = 1e-10
Identities = 41/119 (34%), Positives = 67/119 (55%), Gaps = 3/119 (2%)
Query: 83 LTGVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SL 142
+T V LL +A Q+ ++Q+DV++ F+HG+L+E+VYM +PP + H ++V SL
Sbjct: 1079 MTTVRTLLRNVAANQW-EVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSL 1137
Query: 143 FMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ + + S L G+ QS +SLF+ N V LI+VD+L++ GND
Sbjct: 1138 YGLKQAPRCWFKKLSDSLL-RFGFVQSYEDYSLFSYTRNNIELRV-LIYVDDLLICGND 1194
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 63.2 bits (152), Expect = 2e-10
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 83 LTGVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SL 142
+T V LL +A Q+ ++Q+DVN+ F+HG+LDE+VYM +PP + H ++V SL
Sbjct: 726 MTTVRTLLRLVAANQW-EVYQMDVNNAFLHGDLDEEVYMKLPPGFRHSHPDKVCRLRKSL 784
Query: 143 FMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ + + S L G+ Q +S F+ N V L++VD+L++ GND
Sbjct: 785 YGLKQAPRCWFKKL-SDALLRFGFVQGHEDYSFFSYTRNGIELRV-LVYVDDLLICGND 841
>At2g07420 putative retroelement pol polyprotein
Length = 1664
Score = 62.4 bits (150), Expect = 3e-10
Identities = 41/116 (35%), Positives = 72/116 (61%), Gaps = 7/116 (6%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SLFMV-- 145
++L++ T L Q+DV + F+ GEL+EKVYM PP +A N+V+ +++ +
Sbjct: 984 VVLSLTTNLEWDLWQMDVKNAFLQGELEEKVYMKPPPGLEDINAPNKVFKLKKAIYGLKQ 1043
Query: 146 SIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
S R+ + L S+ L G+ +S++ ++LFT + +QK VIL++VD++I+ GND
Sbjct: 1044 SPRAWYHKL---STTLMGRGFKRSEADNTLFT-LPSQKGIVVILVYVDDIIISGND 1095
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 62.0 bits (149), Expect = 4e-10
Identities = 36/112 (32%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 90 LLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIRS 149
+LA+A + +HQ+DV++ F+HG+L+E+VYM +PP + ++V SL+ +
Sbjct: 1080 ILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAP 1139
Query: 150 ASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ S+ L ++G+ QS +SLF+ + N +L++VD+LI+ GN+
Sbjct: 1140 RCWFSKL-STALRNIGFTQSYEDYSLFS-LKNGDTIIHVLVYVDDLIVAGNN 1189
>At4g23160 putative protein
Length = 1240
Score = 60.8 bits (146), Expect = 8e-10
Identities = 40/118 (33%), Positives = 65/118 (54%), Gaps = 7/118 (5%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHH-----ALNQVYTDS*SLF 143
L+LAI+ LHQLD+++ F++G+LDE++YM +PP Y+ N V S++
Sbjct: 178 LILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIY 237
Query: 144 MVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ S + L S L G+ QS S H+ F KI F +L++VD++I+ N+
Sbjct: 238 GLKQASRQWFLKF-SVTLIGFGFVQSHSDHTYFLKI-TATLFLCVLVYVDDIIICSNN 293
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 60.8 bits (146), Expect = 8e-10
Identities = 38/112 (33%), Positives = 64/112 (56%), Gaps = 2/112 (1%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIR 148
L L +A + H+HQ+DV++ F+HG+L E+VYM +P + ++V SL+ +
Sbjct: 692 LFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQA 751
Query: 149 SASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGN 200
+ SS L G+ QS S +SLF+ +N F +L++VD+LI+ G+
Sbjct: 752 PRCWFSKL-SSALKQYGFTQSLSDYSLFS-YNNDGVFVHVLVYVDDLIISGS 801
>At4g04290 putative reverse transcriptase
Length = 403
Score = 60.8 bits (146), Expect = 8e-10
Identities = 41/116 (35%), Positives = 72/116 (61%), Gaps = 7/116 (6%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SLFMV-- 145
++L++AT L Q+DV + F+ GEL+E+VYM PP +A N+V+ +++ +
Sbjct: 69 VVLSLATNLEWDLWQMDVKNAFLQGELEEEVYMKPPPGLEVINAPNKVFKLKKAIYGLKQ 128
Query: 146 SIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
S R+ + L S+ L G+ S++ ++LFT + +QK VIL++VD++I+ GND
Sbjct: 129 SPRAWYHKL---STTLMGRGFKTSEADNTLFT-LPSQKGIVVILVYVDDIIISGND 180
>At1g57640
Length = 1444
Score = 60.8 bits (146), Expect = 8e-10
Identities = 38/112 (33%), Positives = 64/112 (56%), Gaps = 2/112 (1%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIR 148
L L +A + H+HQ+DV++ F+HG+L E+VYM +P + ++V SL+ +
Sbjct: 1027 LFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQA 1086
Query: 149 SASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGN 200
+ SS L G+ QS S +SLF+ +N F +L++VD+LI+ G+
Sbjct: 1087 PRCWFSKL-SSALKQYGFTQSLSDYSLFS-YNNDGIFVHVLVYVDDLIISGS 1136
>At4g17450 retrotransposon like protein
Length = 1433
Score = 60.1 bits (144), Expect = 1e-09
Identities = 38/126 (30%), Positives = 73/126 (57%), Gaps = 14/126 (11%)
Query: 83 LTGVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSH--------HALNQ 134
LT V +LL A ++ +HQLD+++ F++G+LDE++YM +PP Y+ HA+ +
Sbjct: 1004 LTSVRMMLLLAAKMKW-SVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEALPPHAICR 1062
Query: 135 VYTDS*SLFMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDN 194
++ S++ + S + L S+ L +G+ +S + H+LF K N +L++VD+
Sbjct: 1063 LHK---SIYGLKQASRQWYLKL-SNTLKGMGFQKSNADHTLFIKYANGV-LMGVLVYVDD 1117
Query: 195 LILPGN 200
+++ N
Sbjct: 1118 IMIVSN 1123
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 60.1 bits (144), Expect = 1e-09
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 18/120 (15%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIR 148
L L +A + +HQ+DV++ F+HG+L E+VYM +PP + N+V +R
Sbjct: 916 LFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKV---------CRLR 966
Query: 149 SASYSLP----CPSSFLTS----LGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGN 200
A Y L C LT+ G+ QS + +SLFT + ILI+VD+LI+ GN
Sbjct: 967 KALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIK-ILIYVDDLIITGN 1025
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 58.2 bits (139), Expect = 5e-09
Identities = 34/114 (29%), Positives = 68/114 (58%), Gaps = 7/114 (6%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHH-----ALNQVYTDS*SLF 143
LLL ++ ++ L QLDV++ F++GEL+E+++M +P Y+ N V S++
Sbjct: 1032 LLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIY 1091
Query: 144 MVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLIL 197
+ S + SS L SLG+ ++ H+LF K+++ + F ++L++VD++++
Sbjct: 1092 GLKQASRQWFKKFSSSLL-SLGFKKTHGDHTLFLKMYDGE-FVIVLVYVDDIVI 1143
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 57.4 bits (137), Expect = 9e-09
Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 83 LTGVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SL 142
+T V LL +A Q+ ++Q+DV++ F+HG+L+E+VYM +PP + H ++V SL
Sbjct: 1069 MTTVRTLLRLVAANQW-EVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSL 1127
Query: 143 FMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTV-ILIFVDNLILPGND 201
+ + + S L G+ Q +S F+ ++ K + +L++VD+LI+ GND
Sbjct: 1128 YGLKQAPRCWFKKL-SDALKRFGFIQGYEDYSFFS--YSCKGIELRVLVYVDDLIICGND 1184
>At1g36620 hypothetical protein
Length = 1152
Score = 57.4 bits (137), Expect = 9e-09
Identities = 36/111 (32%), Positives = 60/111 (53%), Gaps = 2/111 (1%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIR 148
LLL +A + LHQ+DV++ F+HG+L E +YM PP + + V S++ +
Sbjct: 1027 LLLDVAAAKDWELHQMDVHNAFLHGDLKEDIYMKPPPGFKTTDPSLVCKLKKSIYGLKQA 1086
Query: 149 SASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPG 199
+ +S L G+ QS+ +SLFT I K VI ++VD++++ G
Sbjct: 1087 PRCWFEKLSTSLL-KFGFTQSKKDYSLFTSIRGSKVLHVI-VYVDDVVICG 1135
>At1g70010 hypothetical protein
Length = 1315
Score = 56.6 bits (135), Expect = 2e-08
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHH-----ALNQVYTDS*SLF 143
LLL +A L QLD+++ F++G+LDE++YM +P Y+ N V SL+
Sbjct: 893 LLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLY 952
Query: 144 MVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ S + L SS L LG+ QS H+ F KI + F +L+++D++I+ N+
Sbjct: 953 GLKQASRQWYLKF-SSTLLGLGFIQSYCDHTCFLKI-SDGIFLCVLVYIDDIIIASNN 1008
>At4g27210 putative protein
Length = 1318
Score = 55.5 bits (132), Expect = 4e-08
Identities = 41/126 (32%), Positives = 63/126 (49%), Gaps = 9/126 (7%)
Query: 84 TGVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLF 143
T + L+L +AT + Q+DV + F+HG+L E VYM P + ++ D L
Sbjct: 801 TPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKETVYMTQPAGF----VDPSKPDHVCLL 856
Query: 144 MVSIRSASYS----LPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPG 199
SI S S+FL G+ S+S SLF HN N ++L++VD++++ G
Sbjct: 857 HKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAHN-NNLILLLLYVDDMVITG 915
Query: 200 ND*QKL 205
N Q L
Sbjct: 916 NSSQTL 921
>At4g04410 putative polyprotein
Length = 1017
Score = 55.1 bits (131), Expect = 5e-08
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 17/121 (14%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVSIR 148
++L++AT L Q+DV + F+ GEL+E+VYM PP L ++ +R
Sbjct: 819 VVLSLATNLSWDLWQMDVKNAFLQGELEEEVYMTPPP-----GLEDSIAPG---KVLRLR 870
Query: 149 SASYSLPCP--------SSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGN 200
A Y L S+ L G+ +S++ H+LFT + + + V LI+VDN+I+ G+
Sbjct: 871 KAIYGLKQSPRAWYHNLSTTLKGKGFKKSEADHTLFT-LQSDQGIIVALIYVDNIIISGD 929
Query: 201 D 201
+
Sbjct: 930 N 930
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 53.9 bits (128), Expect = 1e-07
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 85 GVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHA-----LNQVYTDS 139
G + LLL +A L Q+DV++ F+HGELDE++YM +P Y+ V
Sbjct: 613 GSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKPVCRLL 672
Query: 140 *SLFMVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPG 199
SL+ + S + S FL + QS + +++F K+ + + V+L++VD+L++
Sbjct: 673 KSLYGLKQASRQWYKRLSSVFL-GANFIQSPADNTMFVKV-SCTSIIVVLVYVDDLMIAS 730
Query: 200 ND 201
ND
Sbjct: 731 ND 732
>At4g28900 putative protein
Length = 1415
Score = 52.8 bits (125), Expect = 2e-07
Identities = 37/126 (29%), Positives = 62/126 (48%), Gaps = 17/126 (13%)
Query: 84 TGVLFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLF 143
T + +L +AT + QLDV + F+HG+L E VYM PP + NQ D +
Sbjct: 965 TATVRTILHVATINKWEIKQLDVKNAFLHGDLKETVYMYQPPGFE----NQDRPD----Y 1016
Query: 144 MVSIRSASYSLPCP--------SSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNL 195
+ + A Y L S+FL G+ + S SLF + ++ +L+++D++
Sbjct: 1017 VCKLNKAIYGLKQAPRAWFDKFSTFLLEFGFICTYSDPSLFVFLKG-RDLMFLLLYMDDM 1075
Query: 196 ILPGND 201
+L GN+
Sbjct: 1076 LLTGNN 1081
>At1g47650 hypothetical protein
Length = 1409
Score = 52.8 bits (125), Expect = 2e-07
Identities = 34/114 (29%), Positives = 65/114 (56%), Gaps = 7/114 (6%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHH-----ALNQVYTDS*SLF 143
LLL I+ ++ L QLDV++ F++GEL+E++YM +P Y+ N V S++
Sbjct: 823 LLLKISASKKWFLKQLDVSNAFLNGELEEEIYMKLPEGYAARKGITLPPNSVCRLKRSIY 882
Query: 144 MVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLIL 197
+ S + +S L LG+ ++ H+LF K ++ + F ++L++VD++ +
Sbjct: 883 GLKQASRQWFKKFSASLL-DLGFKKTHGDHTLFIKEYDGE-FVIVLVYVDDIAI 934
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 52.4 bits (124), Expect = 3e-07
Identities = 32/114 (28%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 89 LLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFY-----SHHALNQVYTDS*SLF 143
LLL ++ ++ +L+QLD+++ F++G+L+E +YM +P Y + N V S++
Sbjct: 1039 LLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIY 1098
Query: 144 MVSIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLIL 197
+ S + L +S L +LG+ + H+LF + + F V+L++VD++++
Sbjct: 1099 GLKQASRQWFLKFSNSLL-ALGFEKQHGDHTLFVRCIGSE-FIVLLVYVDDIVI 1150
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.351 0.154 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,669,460
Number of Sequences: 26719
Number of extensions: 208062
Number of successful extensions: 784
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 81
length of query: 300
length of database: 11,318,596
effective HSP length: 99
effective length of query: 201
effective length of database: 8,673,415
effective search space: 1743356415
effective search space used: 1743356415
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 60 (27.7 bits)
Medicago: description of AC134049.15