BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134049.11 - phase: 0 
         (349 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g46600 scarecrow-like protein                                       30  1.5
At4g24550 clathrin coat assembly like protein                          30  2.6
At1g72700 putative P-type transporting ATPase                          30  2.6
At2g41640 unknown protein                                              29  3.3
At3g42880 receptor protein kinase -like protein                        28  5.7
At2g30770 putative cytochrome P450                                     28  5.7
At5g42710 unknown protein                                              28  7.5
At2g33300 hypothetical protein                                         28  7.5
At2g18820 putative non-LTR retroelement reverse transcriptase          28  9.7
At1g51480 hypothetical protein                                         28  9.7

>At3g46600 scarecrow-like protein
          Length = 583

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 22/49 (44%), Positives = 27/49 (54%), Gaps = 1/49 (2%)

Query: 216 LEDEEFCRAAADGGFDIRLTFQPPNSPDLNVLDLGFFSAIQSLQQQEVT 264
           LED    +AA    F++ L  Q P S DL    LG FS+I SL Q EV+
Sbjct: 82  LEDSLALQAAERSFFEV-LQDQTPISGDLEDGSLGNFSSITSLHQPEVS 129


>At4g24550 clathrin coat assembly like protein
          Length = 451

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 76  PMYNVVHIDEKWFYITKKSSSY 97
           PMYNV  +  K+  I KKSSSY
Sbjct: 411 PMYNVSKLQVKYLQIAKKSSSY 432


>At1g72700 putative P-type transporting ATPase
          Length = 1228

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 23/86 (26%), Positives = 35/86 (39%), Gaps = 22/86 (25%)

Query: 284 QSSNNIFLTLQSCMTEIMKVKGSNNYKIPH-------MEKEKLLRRGML----PTQL--- 329
           QS   ++ T  S  T+ ++V+G NNY  P         E  +L+    L    P  +   
Sbjct: 477 QSQTKVYGTWDSSRTQEIEVEGDNNYNTPRAPIKGFGFEDNRLMNGNWLRESQPNDILQF 536

Query: 330 --------TCDPELFQETFEYLYNVD 347
                   T  PEL +ET +Y Y  +
Sbjct: 537 FRILAICHTAIPELNEETGKYTYEAE 562


>At2g41640 unknown protein
          Length = 500

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 1/63 (1%)

Query: 245 NVLDLGFFSAIQSLQQQEVTNSVDALIEAVQKSFDAFSAQSSNNIFLTLQSCMTEIMKVK 304
           NVLD G+   IQSL Q+E   +V AL    +      S   S+   L  ++ + E+ +  
Sbjct: 287 NVLDRGYSHRIQSLTQEETEANVTALDFKKKPKLVILSRNGSSRAILN-ENLLVELAEKT 345

Query: 305 GSN 307
           G N
Sbjct: 346 GFN 348


>At3g42880 receptor protein kinase -like protein
          Length = 633

 Score = 28.5 bits (62), Expect = 5.7
 Identities = 22/78 (28%), Positives = 32/78 (40%), Gaps = 3/78 (3%)

Query: 33  EGVLRRHSNVLKPYLNDSNKKARIEFCLDMLEESSIPHDPVFKPMYNVVHIDEKWF---Y 89
           + V+    +V+   + D NK AR  F  +M     + H  V  P+      +EK     Y
Sbjct: 374 KAVMANGLSVVVKRIRDMNKLAREAFDTEMQRFGKLRHPNVLTPLAYHYRREEKLVVSEY 433

Query: 90  ITKKSSSYYLLGDEDEPH 107
           + K S  Y L GD    H
Sbjct: 434 MPKSSLLYVLHGDRGVYH 451


>At2g30770 putative cytochrome P450
          Length = 497

 Score = 28.5 bits (62), Expect = 5.7
 Identities = 15/55 (27%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 244 LNVLDLGFFSAIQSLQQQEVTNSVDALIEAVQKSFDAFSAQSSNNIFLTLQSCMT 298
           LN+L      + + +++ EV    +A+IE ++K+  + S+++ + +F+TL S +T
Sbjct: 134 LNLLTNKMVESFEKVREDEV----NAMIEKLEKASSSSSSENLSELFITLPSDVT 184


>At5g42710 unknown protein
          Length = 807

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 11/38 (28%), Positives = 20/38 (51%)

Query: 38  RHSNVLKPYLNDSNKKARIEFCLDMLEESSIPHDPVFK 75
           +H  +LK Y + + KKA ++ C+   + S + H    K
Sbjct: 516 KHDLLLKSYNDSNEKKAEVDTCIKSSQVSGVEHKKEIK 553


>At2g33300 hypothetical protein
          Length = 265

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 168 KPIISINREVTRMMYINEVLPAL----KEKWPQEHAHETIYIQQDNAPCHVPLEDEEFCR 223
           K   + N+ +T  +  N V+       K +    HAHET  ++Q +   HVP  ++   +
Sbjct: 10  KDAYTYNKALTLNLKKNNVVKVCSGLKKREHQSSHAHETGEVKQIDEQNHVP--EKVSMK 67

Query: 224 AAADGG--FDIRLTFQPPN 240
           +  D    + +RLT Q P+
Sbjct: 68  SVRDNSTCYKVRLTLQKPD 86


>At2g18820 putative non-LTR retroelement reverse transcriptase
          Length = 1412

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 22/68 (32%), Positives = 32/68 (46%), Gaps = 6/68 (8%)

Query: 237 QPPNSPDLNVLDLGFFSAIQSLQQQEVTN-SVDALIEAVQKSFDAFSAQSSNNIFLTLQS 295
           +PPN  D+ +  + FFS + S Q  + T  SVD L   +Q     +S    N   L  + 
Sbjct: 665 RPPNQDDIKIEAVRFFSDLLSSQPSDFTGISVDELKGILQY---RYSLHEQN--LLVAEI 719

Query: 296 CMTEIMKV 303
              E+MKV
Sbjct: 720 TEAEVMKV 727


>At1g51480 hypothetical protein
          Length = 941

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 27/131 (20%), Positives = 53/131 (39%), Gaps = 26/131 (19%)

Query: 37  RRHSNVLKPYLNDS-NKKARIEFCLDMLEESSIPHDPVFKPMYNVVHIDEKW---FYITK 92
           + H  +L P    S N K   +    ++   S   DPVF P++ +    E++   F I +
Sbjct: 14  KSHIEMLHPACEMSWNLKQHDDTAASLMVIQSPTSDPVFNPVHTIKQFGERYTQDFVIRE 73

Query: 93  KSSSYYLLGDEDEPHRMCRNKNYIGKVMFLVVVARPRFDDDGNETFSGKIGCF----PIV 148
           +  S+ +L      H  C+  +++  + +             N+ F+   GCF      +
Sbjct: 74  RDKSFGVL-----IHCFCKMADWLLLIPW-------------NKIFTAACGCFFSDRNYI 115

Query: 149 HKVAAQRSSIN 159
           HK+ A    ++
Sbjct: 116 HKMEANLDDLH 126


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,850,427
Number of Sequences: 26719
Number of extensions: 344524
Number of successful extensions: 757
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 10
length of query: 349
length of database: 11,318,596
effective HSP length: 100
effective length of query: 249
effective length of database: 8,646,696
effective search space: 2153027304
effective search space used: 2153027304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)