BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC133571.7 + phase: 0 
         (79 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g25110 unknown protein                                             129  3e-31
At1g15280 unknown protein                                              26  3.1
At2g06840 putative retroelement pol polyprotein                        26  4.1
At1g65700 small nuclear ribonucleoprotein, putative                    25  5.3

>At2g25110 unknown protein
          Length = 218

 Score =  129 bits (323), Expect = 3e-31
 Identities = 57/68 (83%), Positives = 63/68 (91%)

Query: 10  EGSGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 69
           EGSGKTWKQDQR RLQHIDTSGY +SHDKKY RIAGGQQEVCG+REK+ADN+WLAAEGVY
Sbjct: 151 EGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVY 210

Query: 70  LPVTESKQ 77
           LP+ ES +
Sbjct: 211 LPLNESSK 218



 Score = 25.0 bits (53), Expect = 6.9
 Identities = 17/51 (33%), Positives = 23/51 (44%), Gaps = 2/51 (3%)

Query: 1   MNPTPETIGEGSGKTWKQDQRFRLQHIDTSGYFYSHDKKYSRIAGGQQEVC 51
           + P P T  E  G   K     RLQH+ T  + +SH    S I+G  +  C
Sbjct: 85  VKPVPGTT-EKQGDAVKSGATIRLQHMKTRKWLHSH-LHASPISGNLEVSC 133


>At1g15280 unknown protein
          Length = 584

 Score = 26.2 bits (56), Expect = 3.1
 Identities = 13/42 (30%), Positives = 26/42 (60%), Gaps = 2/42 (4%)

Query: 17  KQDQRFRLQH-IDTSGYFYSHDKKYSRI-AGGQQEVCGVREK 56
           +++++ +LQ  + T G FY HD ++  + AGG + + G R +
Sbjct: 100 EENEKEKLQAAVPTGGAFYMHDDRFQEMSAGGNRRMRGGRRQ 141


>At2g06840 putative retroelement pol polyprotein
          Length = 1102

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 35 SHDKKYSRIAGGQQEVCGVREKRADN 60
          SH++ YSR+  GQQ +   R K   N
Sbjct: 30 SHNRVYSRVIRGQQNLDVARSKETTN 55


>At1g65700 small nuclear ribonucleoprotein, putative
          Length = 98

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (55%)

Query: 35 SHDKKYSRIAGGQQEVCGVREKRADNVWLAAE 66
          SH++ +S   G QQ V G+   R DN+ +  E
Sbjct: 43 SHERVFSTKEGVQQHVLGLYIIRGDNIGVIGE 74


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.313    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,026,105
Number of Sequences: 26719
Number of extensions: 71752
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 5
length of query: 79
length of database: 11,318,596
effective HSP length: 55
effective length of query: 24
effective length of database: 9,849,051
effective search space: 236377224
effective search space used: 236377224
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)