BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133139.2 + phase: 0 /pseudo
(155 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64250 hypothetical protein 61 2e-10
At1g64260 hypothetical protein 59 1e-09
At1g64240 hypothetical protein 57 4e-09
At1g35060 hypothetical protein 55 2e-08
At2g05490 Mutator-like transposase 54 4e-08
At1g49920 hypothetical protein 52 1e-07
At5g16505 mutator-like transposase-like protein (MQK4.25) 52 2e-07
At1g44840 hypothetical protein 51 3e-07
At2g12150 pseudogene 50 5e-07
At3g32060 hypothetical protein 49 8e-07
At2g23500 Mutator-like transposase 49 1e-06
At1g25784 mutator-like transposase, putative 47 3e-06
At2g14790 Mutator-like transposase 47 4e-06
At3g47310 putative protein 46 7e-06
At1g36090 hypothetical protein 45 1e-05
At4g08890 putative transposon protein 45 2e-05
At4g09380 putative protein 45 2e-05
At1g34620 Mutator-like protein 45 2e-05
At1g34700 hypothetical protein 44 3e-05
At5g27190 putative protein 44 5e-05
>At1g64250 hypothetical protein
Length = 790
Score = 61.2 bits (147), Expect = 2e-10
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 7 LRLWVTPQPDLGLISDRHESIKSVVRRLDSNW-----HHVFCIRHI-TQLFEDFQEHRDE 60
+R VT + D+ LIS H I V+ S W +H+FC+ I TQ FQ+ D
Sbjct: 457 IREKVTQRKDICLISRPHPDILDVINEPGSQWQEPWAYHMFCLDDICTQFHYVFQD--DY 514
Query: 61 EKSKKYGLNNINFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRR 120
K+ Y +G + + Y N+I + + KW+D P+ QW QAHD GRR
Sbjct: 515 LKNLVY--------EAGSTSEKEEFDSYMNEIEKKNSEARKWLDQFPQYQWAQAHDSGRR 566
Query: 121 WGHITTNISECF 132
+ +T + F
Sbjct: 567 YRVMTIDAENLF 578
>At1g64260 hypothetical protein
Length = 1490
Score = 58.5 bits (140), Expect = 1e-09
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 7 LRLWVTPQPDLGLISDRHESIKSVVRRLDSNW-----HHVFCIRHI-TQLFEDFQEHRDE 60
+R VT + DL LIS I +VV S W HH FC+ H+ +Q F+++ E
Sbjct: 1200 IREKVTQRKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGVFRDYNLE 1259
Query: 61 EKSKKYGLNNINFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRR 120
++ G N + Y N I++ + + KW+D P+ +W AHD G R
Sbjct: 1260 SLVEQAGSTN----------QKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWALAHDSGLR 1309
Query: 121 WGHITTNISECFNNVLKGGP 140
+G I + E V +G P
Sbjct: 1310 YGIIEID-REALFAVCRGFP 1328
Score = 52.0 bits (123), Expect = 1e-07
Identities = 36/135 (26%), Positives = 56/135 (40%), Gaps = 22/135 (16%)
Query: 7 LRLWVTPQPDLGLISDRHESIKSVVRRLDSNW-----HHVFCIRHI----TQLFEDFQEH 57
+R VT + L LIS H I +VV S W +H F + H +++F F
Sbjct: 436 IREKVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFYSQFSRVFPSF--- 492
Query: 58 RDEEKSKKYGLNNINFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQ 117
+G + + Y N I++ + + KW+D P+ +W AHD
Sbjct: 493 ----------CLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDN 542
Query: 118 GRRWGHITTNISECF 132
GRR+G + N F
Sbjct: 543 GRRYGIMEINTKALF 557
>At1g64240 hypothetical protein
Length = 938
Score = 57.0 bits (136), Expect = 4e-09
Identities = 39/136 (28%), Positives = 63/136 (45%), Gaps = 19/136 (13%)
Query: 7 LRLWVTPQPDLGLISDRHESIKSVVRRLDSNW-----HHVFCIRHITQLFED-FQEHRDE 60
+R VT + L LIS + +V+ S W ++ FC+RH+ F F+++ E
Sbjct: 626 IRERVTQRKGLCLISSPDPDLLAVINESGSQWQEPWAYNRFCLRHLLSQFSGIFRDYYLE 685
Query: 61 EKSKKYGLNNINFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRR 120
+ K+ +G + + Y I + + KW+D P+ QW AHD GRR
Sbjct: 686 DLVKR----------AGSTSQKEEFDSYMKDIEKKNSEARKWLDQFPQNQWALAHDNGRR 735
Query: 121 WGHI---TTNISECFN 133
+G + TT + E FN
Sbjct: 736 YGIMEIETTTLFEDFN 751
>At1g35060 hypothetical protein
Length = 873
Score = 54.7 bits (130), Expect = 2e-08
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 17 LGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLNNINFLPS 76
L ++SDRHESIK V+++ HH CI H+ + + + K GL + +
Sbjct: 586 LTILSDRHESIKVGVKKVFPQAHHGACIIHLCRNIQ--------ARFKNRGLTQL-VKNA 636
Query: 77 GYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISECFNNVL 136
GY T NQI + +K++ D W + + G+R+ +T+NI+E N L
Sbjct: 637 GYEFTSGKFKTLYNQINAINPLCIKYLHDVGMAHWTRLYFPGQRFNLMTSNIAETLNKAL 696
Query: 137 KGGPQS 142
G S
Sbjct: 697 FKGRSS 702
>At2g05490 Mutator-like transposase
Length = 942
Score = 53.5 bits (127), Expect = 4e-08
Identities = 35/128 (27%), Positives = 59/128 (45%), Gaps = 10/128 (7%)
Query: 11 VTPQPD-LGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLN 69
+ P D L ++SD+H SI V + HH CI H E +YG++
Sbjct: 628 IVPDTDNLMIVSDKHSSIYKGVSVVYPKAHHGACIVH--------PEQNISVSYARYGVS 679
Query: 70 NINFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNIS 129
+ F + + Y ++R WS K+++D + W +A+ + R+ +T+N S
Sbjct: 680 GL-FFSAAKAYRVRDFEKYFEELRGWSPGCAKYLEDVGFEHWTRAYCKEERYNIMTSNNS 738
Query: 130 ECFNNVLK 137
E NNVL+
Sbjct: 739 EAMNNVLR 746
>At1g49920 hypothetical protein
Length = 785
Score = 52.0 bits (123), Expect = 1e-07
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 7 LRLWVTPQPDLGLISDRHESIKSVVRRLDSNW-----HHVFCIRHITQLFEDFQEHRDEE 61
+R VT + + LIS I +V+ S W +H FC+ H+ D
Sbjct: 432 IREKVTQRQGICLISSPDPDILAVINEPGSQWKEPWAYHRFCLYHLCSKLCSVSPGFDY- 490
Query: 62 KSKKYGLNNINFL--PSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGR 119
N++FL +G S + Y +I++ + + KW+D P QW AHD GR
Sbjct: 491 --------NMHFLVDEAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPPHQWALAHDDGR 542
Query: 120 RWG 122
R+G
Sbjct: 543 RYG 545
>At5g16505 mutator-like transposase-like protein (MQK4.25)
Length = 597
Score = 51.6 bits (122), Expect = 2e-07
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 15 PDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLNNINFL 74
P L ++S+R ++ V H FC+R++++ F RD K+ K L NI F
Sbjct: 282 PKLTILSERQSAVVEAVETHFPTAFHGFCLRYVSENF------RDTFKNTK--LVNI-FW 332
Query: 75 PSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISECFNN 134
+ Y++T N++ + S DVV+W + W A+ QG R+GH I+E N
Sbjct: 333 SAVYALTPAEFETKSNEMIEISQDVVQWFELYLPHLWAVAYFQGVRYGHFGLGITEVLYN 392
>At1g44840 hypothetical protein
Length = 926
Score = 50.8 bits (120), Expect = 3e-07
Identities = 34/126 (26%), Positives = 58/126 (45%), Gaps = 9/126 (7%)
Query: 17 LGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLNNINFLPS 76
L ++SDRH SI V+R+ +H CI H+ + + K K L + +
Sbjct: 635 LTILSDRHSSILVAVKRVFPQANHGACIIHLCRNIQT--------KYKNKALTQL-VKNA 685
Query: 77 GYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISECFNNVL 136
GY+ T + QI + + K++ D W + + +G+R+ +T+NI+E N L
Sbjct: 686 GYAFTGTKFKEFYGQIETTNQNCGKYLHDIGMANWTRHYFRGQRFNLMTSNIAETLNKAL 745
Query: 137 KGGPQS 142
G S
Sbjct: 746 NKGRSS 751
>At2g12150 pseudogene
Length = 942
Score = 50.1 bits (118), Expect = 5e-07
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 16 DLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLNNINFLP 75
DL ++SDRH SI V + +H CI H+ E +YG++ + F
Sbjct: 634 DLMIVSDRHSSIYKGVSVVYPKANHGACIVHL--------ERNISVSYARYGVSGLFFSA 685
Query: 76 SGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISECFNNV 135
+ + Y ++R S K+++D + W +A+ +G R+ +T+N SE NNV
Sbjct: 686 AKVYRVR-DFEKYFEELRGRSPGCAKYLEDVGFEHWTRAYCKGERYNIMTSNNSEAMNNV 744
Query: 136 L 136
L
Sbjct: 745 L 745
>At3g32060 hypothetical protein
Length = 487
Score = 49.3 bits (116), Expect = 8e-07
Identities = 35/145 (24%), Positives = 61/145 (41%), Gaps = 21/145 (14%)
Query: 7 LRLWVTPQPDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRD------- 59
L+ V +L ++DR+ S+ +R + + HH +CI H++Q + H +
Sbjct: 317 LKTVVPDTSELVFMTDRNASLIKAIRNVYTAAHHGYCIWHLSQNVKGHATHTNRDVLAWK 376
Query: 60 -EEKSKKYGLNNINFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQG 118
+E S+ Y + + N G+ + P T Y D K++W + G
Sbjct: 377 FQELSRVYVVADFNRAYDGFKLRYPKATKYLE-------------DTTVKEKWARCCFAG 423
Query: 119 RRWGHITTNISECFNNVLKGGPQSS 143
R+ T+N E NNV K + S
Sbjct: 424 ERYNLDTSNCMESLNNVFKNARKYS 448
>At2g23500 Mutator-like transposase
Length = 784
Score = 48.9 bits (115), Expect = 1e-06
Identities = 35/145 (24%), Positives = 61/145 (41%), Gaps = 21/145 (14%)
Query: 7 LRLWVTPQPDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRD------- 59
L+ V +L ++DR+ S+ +R + + HH +CI H++Q + H +
Sbjct: 447 LKTVVPDTSELVFMTDRNASLIKAIRNVYTAAHHGYCIWHLSQNVKGHATHTNRDVLAWK 506
Query: 60 -EEKSKKYGLNNINFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQG 118
+E S+ Y + + N G+ + P T Y D K++W + G
Sbjct: 507 FQELSRVYVVADFNRAYDGFKLRYPKATKYLE-------------DTTVKEKWARCCFPG 553
Query: 119 RRWGHITTNISECFNNVLKGGPQSS 143
R+ T+N E NNV K + S
Sbjct: 554 ERYNLDTSNCVESLNNVFKNARKYS 578
>At1g25784 mutator-like transposase, putative
Length = 1127
Score = 47.4 bits (111), Expect = 3e-06
Identities = 32/126 (25%), Positives = 58/126 (45%), Gaps = 9/126 (7%)
Query: 11 VTPQPDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLNN 70
V DL ++SDRH SI + + HH C H+ + + K+G++
Sbjct: 630 VPDSDDLMIVSDRHSSIYKGLSVVYPRAHHGACAVHLERNLSTYYG--------KFGVSA 681
Query: 71 INFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISE 130
+ F + + Y +R+ S K+++D + W +AH +G R+ +++N SE
Sbjct: 682 L-FFSAAKAYRVRDFEKYFELLREKSAKCAKYLEDIGFEHWTRAHCRGERYNIMSSNNSE 740
Query: 131 CFNNVL 136
N+VL
Sbjct: 741 SMNHVL 746
>At2g14790 Mutator-like transposase
Length = 895
Score = 47.0 bits (110), Expect = 4e-06
Identities = 31/126 (24%), Positives = 58/126 (45%), Gaps = 9/126 (7%)
Query: 11 VTPQPDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLNN 70
V DL ++SDRH S+ + + HH C H+ + + K+G++
Sbjct: 539 VPDSDDLMIVSDRHSSLYKGLSVVYPRAHHGACAVHLERNLSTYYG--------KFGVSA 590
Query: 71 INFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISE 130
+ F + + Y +R+ S K+++D + W +AH +G R+ +++N SE
Sbjct: 591 L-FFSAAKAYRVRDFEKYFELLREKSGKCAKYLEDIGFEHWTRAHCRGERYNIMSSNNSE 649
Query: 131 CFNNVL 136
N+VL
Sbjct: 650 SMNHVL 655
>At3g47310 putative protein
Length = 735
Score = 46.2 bits (108), Expect = 7e-06
Identities = 38/127 (29%), Positives = 58/127 (44%), Gaps = 15/127 (11%)
Query: 15 PDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLNNINFL 74
P L ISDRH+SIK VV+ + N H CI H+ Q RD K K G + F
Sbjct: 418 PGLVFISDRHQSIKKVVKTVYPNALHAACIWHLC------QNMRDRVKIDKDGA-AVKFR 470
Query: 75 PSGYSMTQPSIT----HYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISE 130
++ T+ H+ + +D +VK ++W + H +G ++ T+N +E
Sbjct: 471 DCAHAYTESEFEKEFGHFTSLWPKAADFLVK----VGFEKWSRCHFKGDKYNIDTSNSAE 526
Query: 131 CFNNVLK 137
N V K
Sbjct: 527 SINGVFK 533
>At1g36090 hypothetical protein
Length = 645
Score = 45.4 bits (106), Expect = 1e-05
Identities = 34/123 (27%), Positives = 52/123 (41%), Gaps = 7/123 (5%)
Query: 15 PDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLNNINFL 74
P L ISDRH+SIK V+ + N H CI H+ Q RD K K G + F
Sbjct: 429 PRLVFISDRHQSIKKAVKTVYPNALHAACIWHLC------QNMRDRVKIDKDGA-AVKFR 481
Query: 75 PSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISECFNN 134
++ T+ V ++ ++W + H +G ++ T+N +E N
Sbjct: 482 DCAHAYTESEFEKEFGHFTSLWPKAVDFLVKVGFEKWSRCHFKGDKYNIDTSNSAESING 541
Query: 135 VLK 137
V K
Sbjct: 542 VFK 544
>At4g08890 putative transposon protein
Length = 1028
Score = 45.1 bits (105), Expect = 2e-05
Identities = 30/126 (23%), Positives = 57/126 (44%), Gaps = 9/126 (7%)
Query: 11 VTPQPDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLNN 70
V DL ++SDRH SI + + HH C H+ + + K+G++
Sbjct: 548 VPDSDDLRIVSDRHSSIYKGLSVVYPRAHHGACAVHLERNLSTYYG--------KFGVSA 599
Query: 71 INFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISE 130
+ F + + Y +R+ S K+++D + W + H +G+ + +++N SE
Sbjct: 600 L-FFSAAKAYRVRDFEKYFGLLREKSAKCAKYLEDIGFEHWTRVHCRGKHYNIMSSNNSE 658
Query: 131 CFNNVL 136
N+VL
Sbjct: 659 SMNHVL 664
>At4g09380 putative protein
Length = 960
Score = 44.7 bits (104), Expect = 2e-05
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 15 PDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLNNINFL 74
P L ISDRH+SIK V+ + N H CI H+ Q RD K K G + F
Sbjct: 469 PGLVFISDRHQSIKKAVKTVYPNALHAACIWHLC------QNMRDRVKIDKDGA-AVKFR 521
Query: 75 PSGYSMTQPSIT----HYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISE 130
++ T+ H+ + +D +VK ++W + H +G ++ T+N +E
Sbjct: 522 DCAHAYTESEFEKEFGHFTSLWPKAADFLVK----VGFEKWSRCHFKGDKYNIDTSNSAE 577
Query: 131 CFNNVLK 137
N V K
Sbjct: 578 SINGVFK 584
>At1g34620 Mutator-like protein
Length = 1034
Score = 44.7 bits (104), Expect = 2e-05
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 15 PDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRD-----EEKSKKYGLN 69
PDL ISDRHESI + + ++ + +H C H+ + + + E ++ + +
Sbjct: 622 PDLMFISDRHESIYTGLSKVYTQANHAACTVHLWRNIRHLYKPKSLCRLMSEAAQAFHVT 681
Query: 70 NINFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNIS 129
+ N + P Y + D +W + H +GRR+ + +NI
Sbjct: 682 DFNRIFLKIQKLNPGCAAY--------------LVDLGFSEWTRVHSKGRRFNIMDSNIC 727
Query: 130 ECFNNVLK 137
E +NNV++
Sbjct: 728 ESWNNVIR 735
>At1g34700 hypothetical protein
Length = 990
Score = 43.9 bits (102), Expect = 3e-05
Identities = 30/121 (24%), Positives = 56/121 (45%), Gaps = 9/121 (7%)
Query: 16 DLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKYGLNNINFLP 75
DL ++SDRH SI + + HH C H+ + + K+G++ + F
Sbjct: 635 DLMIVSDRHSSIYKGLSVVYPRAHHGACAVHLERNLSTYYG--------KFGVSAL-FFS 685
Query: 76 SGYSMTQPSITHYRNQIRDWSDDVVKWVDDNPKKQWLQAHDQGRRWGHITTNISECFNNV 135
+ + Y +R+ S K+++D + W +AH +G R+ +++N E N+V
Sbjct: 686 AAKAYRVKDFEKYFELLREKSAKCGKYLEDIGFEHWTRAHCRGERYNIMSSNNFESMNHV 745
Query: 136 L 136
L
Sbjct: 746 L 746
>At5g27190 putative protein
Length = 779
Score = 43.5 bits (101), Expect = 5e-05
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 7 LRLWVTPQPDLGLISDRHESIKSVVRRLDSNWHHVFCIRHITQLFEDFQEHRDEEKSKKY 66
L+ + P L +SDRH+SI + ++ N H C+ H++Q + + EE +
Sbjct: 444 LKTVIPDVPGLVFVSDRHQSIIKSIMQVFPNARHGHCVWHLSQNVKVRVKTEKEEAA--- 500
Query: 67 GLNNINFLPSGYSMTQPSITHYRNQIRDWSDDVVKWVDD-NPKKQWLQAHDQGRRWGHIT 125
NF+ + TQ T + R +V ++D P + W + +G R+ T
Sbjct: 501 ----ANFIACAHVYTQFEFTREYARFRRRFPNVGPYLDRWAPVENWAMCYFEGDRYNIDT 556
Query: 126 TNISECFNNVLK 137
+N E N+ +
Sbjct: 557 SNACESLNSTFE 568
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,129,287
Number of Sequences: 26719
Number of extensions: 176296
Number of successful extensions: 561
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 87
length of query: 155
length of database: 11,318,596
effective HSP length: 91
effective length of query: 64
effective length of database: 8,887,167
effective search space: 568778688
effective search space used: 568778688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC133139.2