BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130806.3 - phase: 0
(320 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g10780 pseudogene 89 2e-18
At2g04670 putative retroelement pol polyprotein 83 2e-16
At3g31970 hypothetical protein 81 9e-16
At4g03650 putative reverse transcriptase 77 1e-14
At3g29480 hypothetical protein 77 1e-14
At3g43830 putative protein 75 6e-14
At2g14650 putative retroelement pol polyprotein 66 2e-11
At4g10580 putative reverse-transcriptase -like protein 63 2e-10
At4g03840 putative transposon protein 62 4e-10
At2g06470 putative retroelement pol polyprotein 61 7e-10
At3g42290 putative protein 57 1e-08
At3g43090 putative protein 57 2e-08
At2g07700 putative retroelement pol polyprotein 55 5e-08
At4g07850 putative polyprotein 50 2e-06
At4g08100 putative polyprotein 49 3e-06
At1g36120 putative reverse transcriptase gb|AAD22339.1 44 2e-04
At2g06890 putative retroelement integrase 43 2e-04
At2g37340 unknown protein 41 0.001
At1g75560 DNA-binding protein 39 0.003
At3g43590 putative protein 39 0.004
>At2g10780 pseudogene
Length = 1611
Score = 89.4 bits (220), Expect = 2e-18
Identities = 79/307 (25%), Positives = 123/307 (39%), Gaps = 41/307 (13%)
Query: 34 MRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDW 93
+ +LE R F G DP A W ++R F+ + ED + H L + +W
Sbjct: 168 LSLLEHVSRLGTRHFMGSTDPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNW 227
Query: 94 WVSLLPTLKQDGAAV-TWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFV 152
W+++ K+ G V ++A F EF +YFP + + E +L+L QGN ++ EY +F
Sbjct: 228 WLTVE---KRRGDEVRSFADFEDEFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFN 284
Query: 153 ELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTKAHY 212
L ++ E L+ +F GLR +I+ + SELV + E+ +
Sbjct: 285 RLRRYVGRELEEEQAQLR--RFIRGLRIEIRNHCLVRTFNSVSELVERAAMIEEGIEEE- 341
Query: 213 KIVNERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEII--------------- 257
+ +N K R + PADK K++ + K E +
Sbjct: 342 RYLNREKA---PIRNNQSTKPADK-KRKFDKVDNTKSDAKTGECVTCGKNHSGTCWKAIG 397
Query: 258 -CFNCGEKGHKSNACP-----------SEIKRCFRCGKKGHKSNAEIICFNIQHEGRASH 305
C CG K H +CP E + CF CGK GH C + E +A
Sbjct: 398 ACGRCGSKDHAIQSCPKMEPGQSKVLGEETRTCFYCGKTGHLKRE---CPKLTAEKQAGQ 454
Query: 306 RGRSPAN 312
R N
Sbjct: 455 RDNRGGN 461
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 82.8 bits (203), Expect = 2e-16
Identities = 63/245 (25%), Positives = 103/245 (41%), Gaps = 10/245 (4%)
Query: 30 VTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEE 89
V + +RM+E R F P+ A +W ++R F + + +V H L +
Sbjct: 120 VPSYLRMMEQLQRIGTWYFSSGTSPEEADSWRSRVQRNFGSSRCPAEYRVDLAVHFLEGD 179
Query: 90 GDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAA 149
WW S+ T ++ A ++WA F EF ++YFP++ + E FLEL QG S+ EY
Sbjct: 180 AHLWWRSV--TARRRQADMSWADFVAEFNAKYFPQEALDRMEARFLELTQGEWSVREYDR 237
Query: 150 KFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTK 209
+F L + + ++ +F GLR D++ Q + LV + E+D +
Sbjct: 238 EFNRLLAYAGRGMEDDQAQMR--RFLRGLRPDLRVQCRVSQYATKAALVETAAEVEEDLQ 295
Query: 210 AHYKIVN---ERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGH 266
V+ + K QQ P PA K++ P + F+CG H
Sbjct: 296 RQVVGVSPAVQTKNTQQQVTPSKGGKPAQGQKRKW---DHPSRAGQGGRAGYFSCGSLDH 352
Query: 267 KSNAC 271
C
Sbjct: 353 TVADC 357
>At3g31970 hypothetical protein
Length = 1329
Score = 80.9 bits (198), Expect = 9e-16
Identities = 61/222 (27%), Positives = 98/222 (43%), Gaps = 9/222 (4%)
Query: 30 VTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEE 89
V + +RM+E R F G P+ A +W +E F + + +V H L +
Sbjct: 140 VPSYLRMMEQLQRIGTRYFFGGTSPEEADSWKSRVEHNFGSSRCPAEYRVDLAVHFLEGD 199
Query: 90 GDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAA 149
WW S+ T ++ A ++WA F EF ++YFP++ + E FLEL QG S+ EY
Sbjct: 200 AHLWWRSV--TARRRQAHMSWADFVAEFNAKYFPQEALDRMEARFLELTQGERSVREYER 257
Query: 150 KFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTK 209
+F L + + ++ +F GLR D++ Q + LV + E+D +
Sbjct: 258 EFNRLLVYAGRGMQDDQAQMR--RFLRGLRPDLRVRCRVLQYATKAALVETAAEVEEDLQ 315
Query: 210 AHY----KIVNERKTKGQQSRPKPYSAPADKGKQRMVEDRRP 247
V +KT+ QQ P PA K++ RP
Sbjct: 316 RQVVGVSPAVKPKKTQ-QQVAPSKGGKPAQGQKRKERGHLRP 356
>At4g03650 putative reverse transcriptase
Length = 839
Score = 77.4 bits (189), Expect = 1e-14
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Query: 30 VTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEE 89
V + +RM++ R F G P+ A +W ++ER F + + +V H L +
Sbjct: 138 VPSYLRMMKQLQRIGTEYFSGGTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGD 197
Query: 90 GDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAA 149
WW S+ T ++ A ++WA F EF ++YFP + + E FLEL QG S+ EY
Sbjct: 198 AHLWWRSV--TARRRQADMSWADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDR 255
Query: 150 KFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDD 207
KF L + + ++ +F GLR +++ Q + LV + E+D
Sbjct: 256 KFNRLLVYAGRGMEDDQAQMR--RFLRGLRPNLRVRCRVSQYATKAALVETAAEVEED 311
>At3g29480 hypothetical protein
Length = 718
Score = 77.4 bits (189), Expect = 1e-14
Identities = 64/259 (24%), Positives = 99/259 (37%), Gaps = 55/259 (21%)
Query: 30 VTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEE 89
V + +RM+E R F G P+ A +W +ER F + + +V H L +
Sbjct: 33 VPSYLRMMEQLQRIGIGYFSGGTSPEEADSWRSRVERNFGSSRCPVEYRVDLAVHFLEGD 92
Query: 90 GDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAA 149
WW S+ T ++ A ++WA F EF ++YFP++ + E FLEL QG S+ EY
Sbjct: 93 AHLWWKSV--TTRRRQANMSWADFVAEFNAKYFPQEALDRMEAHFLELTQGERSVREYDR 150
Query: 150 KFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTK 209
+F N +Y +
Sbjct: 151 EF-----------------------------------------------NRLLVYAECRS 163
Query: 210 AHYKIVNERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSN 269
+V +KT QQ P PA +G++R + P + CF CG HK
Sbjct: 164 TRIPVVQPKKTH-QQVAPSKGGKPA-QGQKRSWD--HPSRAGQGGRAGCFFCGSLDHKVA 219
Query: 270 ACP--SEIKRCFRCGKKGH 286
C +E + + C K+ H
Sbjct: 220 DCTQRAETREYYHCRKRRH 238
>At3g43830 putative protein
Length = 329
Score = 74.7 bits (182), Expect = 6e-14
Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 26/228 (11%)
Query: 47 TFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGA 106
TF G DP A W +E F+ M+ + + L E +WW + +Q G
Sbjct: 115 TFNGGTDPVKAYNWRNMLECKFKSMRCPVEFWRDLASCYLRGEAQEWW-ERVKQREQVGC 173
Query: 107 AVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAKFYPHYAAETT 166
W+ F+ EF RY PE+ E++FL L+QG ++ +Y +F L +F E
Sbjct: 174 VDQWSFFKEEFTRRYLPEETIDDLEMKFLRLQQGTKTVRKYEKEFHSLERFERRKRGE-H 232
Query: 167 EFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYED--DTKAHYK-IVNERKTKGQ 223
E + KF +GLR DI+ + +LV E + +A YK I E++ G
Sbjct: 233 ELIH--KFISGLRVDIRLCCHVRDFDNMIDLVEKAASLEIGLEEEARYKRIAQEKEAMGS 290
Query: 224 QSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKGHKSNAC 271
+ K E+ C+ CG GH + C
Sbjct: 291 YG-------------------QTGHSKRRCQEVTCYRCGVAGHIARDC 319
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 66.2 bits (160), Expect = 2e-11
Identities = 35/111 (31%), Positives = 56/111 (49%), Gaps = 2/111 (1%)
Query: 30 VTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEE 89
V + +RM+E R F G P+ A +W +ER F + + ++ H L +
Sbjct: 138 VPSYLRMMEQLQRIGTGYFSGGTSPEVADSWRSRVERNFGSSRCPAEYRIDLAVHFLEGD 197
Query: 90 GDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQG 140
WW S+ T ++ A ++WA F EF ++YFP++ + E FLEL QG
Sbjct: 198 AHLWWRSV--TARRRQADISWADFVAEFNAKYFPQEALDRMEAHFLELTQG 246
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 62.8 bits (151), Expect = 2e-10
Identities = 58/242 (23%), Positives = 95/242 (38%), Gaps = 39/242 (16%)
Query: 30 VTAEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEE 89
V + +RM+E R F G P+ A +W + R F + + +V H L +
Sbjct: 134 VLSYLRMMEQLQRIDTGYFSGGTSPEEADSWRSRVGRNFGSSRCPAEYRVDLAVHFLEGD 193
Query: 90 GDDWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAA 149
WW S+ +Q ++WA F EF ++YFP++ ++ YA
Sbjct: 194 AHLWWRSVTARRRQ--TDMSWADFVAEFKAKYFPQE-----------------ALDPYAG 234
Query: 150 KFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTK 209
+ +E A+ FL+ GLR D++ Q + LV + E+D +
Sbjct: 235 QGME------DDQAQMRRFLR------GLRPDLRVRCRVSQYATKAALVETAAEVEEDFQ 282
Query: 210 AHY----KIVNERKTKGQQSRPKPYSAPADKGKQRMVEDRRPKKKDALAEIICFNCGEKG 265
+V +KT+ QQ P PA K++ P + CF+CG
Sbjct: 283 RQVVGVSPVVQPKKTQ-QQVTPSKGGKPAQGQKRKW---DHPSRAGQGGRARCFSCGSLD 338
Query: 266 HK 267
HK
Sbjct: 339 HK 340
>At4g03840 putative transposon protein
Length = 973
Score = 62.0 bits (149), Expect = 4e-10
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 34 MRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDW 93
+ +LE R F G DP A W ++R F+ + ED + H L + +W
Sbjct: 133 LSLLEHVSRLGTRHFMGSTDPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLERDAHNW 192
Query: 94 WVSLLPTLKQDGAAV-TWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFV 152
W+++ K+ G V ++A F EF +YFP + + E +L+L QGN ++ EY +F
Sbjct: 193 WLTVE---KRRGDEVRSFADFEDEFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFN 249
Query: 153 ELAKF 157
L ++
Sbjct: 250 RLRRY 254
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 61.2 bits (147), Expect = 7e-10
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 34 MRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDW 93
+ +LE R F G DP A W ++R F+ + ED + H L + +W
Sbjct: 133 LSLLEHVSRLGTRHFMGSTDPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNW 192
Query: 94 WVSLLPTLKQDGAAV-TWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFV 152
W+++ K+ G V ++A F EF +YFP + + E +L+L QGN ++ EY +F
Sbjct: 193 WLTVE---KRRGDEVRSFADFEDEFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFN 249
Query: 153 ELAKF 157
L ++
Sbjct: 250 RLRRY 254
>At3g42290 putative protein
Length = 462
Score = 57.4 bits (137), Expect = 1e-08
Identities = 48/212 (22%), Positives = 88/212 (40%), Gaps = 28/212 (13%)
Query: 57 AQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGAAVTWAVFRRE 116
A +W ++R F + + +V H L E+ WW S+ T ++ A ++WA F E
Sbjct: 163 ADSWRSRVKRNFSSSRCLMEYRVDLAVHFLEEDAHLWWKSV--TARRRQADMSWADFVVE 220
Query: 117 FLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCIKFEN 176
F ++YF +D + E+ FLEL S+ EY +F + + + L+ +F
Sbjct: 221 FNAKYFLQDELDRMEVRFLELTLVERSVWEYDREFNRVLVYAGWGMKDGQAELR--RFMR 278
Query: 177 GLRADIKRAIGYQQIRVFSELVNSCRIYEDDTKAHYKIVNERKTKGQQSRPKPYSAPADK 236
GLR D++ Q + + LV + ++ + K Q + + ++ +
Sbjct: 279 GLRPDLRVRCRMSQYALKAALVETAA----------EVAPRKGGKPMQGKKRSWNHLSRA 328
Query: 237 GKQRMVEDRRPKKKDALAEIICFNCGEKGHKS 268
G+ CF+CG HK+
Sbjct: 329 GQG--------------GRAGCFSCGNLAHKN 346
>At3g43090 putative protein
Length = 357
Score = 56.6 bits (135), Expect = 2e-08
Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 3/194 (1%)
Query: 32 AEMRMLETFMRTHPPTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGD 91
A+M +++ F G DP A W K +E F + + + H L EE
Sbjct: 115 AQMEIMKVMRTMGTEYFTGGIDPVKADDWRKLLENNFENARCPVEFQKDIIVHFLREEAS 174
Query: 92 DWWVSLLPTLKQDGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKF 151
WW +L + W FR EF ++FP++ E +F EL+Q + E +
Sbjct: 175 HWWDGVLGNTPVQHV-IFWEDFREEFNRKFFPQEAMDSLEDDFEELRQDTKKVRENEREL 233
Query: 152 VELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTKAH 211
L++F ++ + GLR DI ++ +LV E
Sbjct: 234 SHLSRFSVRAGRGEQSMIR--RLMRGLRPDILTRCASREFFSMIDLVEKAARIESGLVLE 291
Query: 212 YKIVNERKTKGQQS 225
K + + + Q+
Sbjct: 292 AKYLKNTQARTTQA 305
>At2g07700 putative retroelement pol polyprotein
Length = 543
Score = 55.1 bits (131), Expect = 5e-08
Identities = 26/89 (29%), Positives = 49/89 (54%), Gaps = 2/89 (2%)
Query: 48 FKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQDGAA 107
FKG ++ A WL+++E F + + ++ K + + L ++ W S+ T + G
Sbjct: 53 FKGEHNTVVADKWLRDLEMNFEISRCPDNFKRQIAVNFLDKDARIWRESV--TARNQGQM 110
Query: 108 VTWAVFRREFLSRYFPEDVRGKKEIEFLE 136
++W FRREF +YFP + R + E +F++
Sbjct: 111 ISWEAFRREFEKKYFPPEARDRLEQQFMK 139
>At4g07850 putative polyprotein
Length = 1138
Score = 49.7 bits (117), Expect = 2e-06
Identities = 56/255 (21%), Positives = 88/255 (33%), Gaps = 27/255 (10%)
Query: 72 QYTEDQKVRFGTHQLAEEGDDWWVSLLPTLKQ--DGAAVTWAVFRREFLSRYFPEDVRGK 129
+YTE KV+ + + WW ++ T ++ D + TW + R+ P +
Sbjct: 89 EYTEANKVKVAATEFYDYALSWWDQVVTTKRRLGDDSIETWNQLKNIMKRRFVPSHYHRE 148
Query: 130 KEIEFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCIKFENGLRADIKRAIGYQ 189
L QGN ++ EY F E+ + +F GL DI
Sbjct: 149 LHQRLRNLVQGNRTVEEY---FKEMETLMLRADVQEECEATMSRFMGGLNRDILDRFEVI 205
Query: 190 QIRVFSELVNSCRIYEDDTKAHYKIVNERKTKGQQSRPKP-YSAPADKGKQRMVEDRRPK 248
EL + ++E K + R K + KP Y G Q+ + +P
Sbjct: 206 HYENLEELFHKAVMFE-------KQIKRRSAKPSYNSSKPSYQREEKSGFQK---EYKPF 255
Query: 249 KKDALAEIICFNCGEKGHKSNACPSEIKRCFRCGKKGHK----SNAEIICFNIQHEGRAS 304
K + EI KG + + +CF+C GH SN I+ I+ G
Sbjct: 256 VKPKVEEI-----SSKGKEKEVTRTRDLKCFKCHGLGHYASECSNKRIMI--IRDSGEVE 308
Query: 305 HRGRSPANRSSAEVP 319
P E P
Sbjct: 309 SEDEKPEESDVEEAP 323
>At4g08100 putative polyprotein
Length = 1054
Score = 49.3 bits (116), Expect = 3e-06
Identities = 52/250 (20%), Positives = 90/250 (35%), Gaps = 31/250 (12%)
Query: 46 PTFKGRYDPDGAQTWLKEIERVFRVMQYTEDQKVRFGTHQLAEEGDDWWVSLLPTLK--Q 103
P F G +PD W ++IE VF + + KV+ + WW L+ + + +
Sbjct: 97 PAFHGTDNPDTYLEWEQKIELVFLCQECLQSNKVKIAATKFYNYALSWWDQLVTSRRRTR 156
Query: 104 DGAAVTWAVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAKFYPHYAA 163
D TW + R+ P + L QG+ ++ EY F+E+
Sbjct: 157 DYPIKTWNQLKFVMRKRFVPSYYHRELHQRLRNLVQGSKTVEEY---FLEMETLMLRADL 213
Query: 164 ETTEFLKCIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTKAHYKIVNERKTK-- 221
+ +F GL +I+ + Q E+++ ++E K + KT
Sbjct: 214 QEDGEAVMSRFMGGLNREIQDRLETQHYVELEEMLHKAVMFEQQIKRKNARSSHTKTNYS 273
Query: 222 ------------GQQSRPKPYSAPA-----DKGKQRMVEDRRPKKKDALAEIICFNCGEK 264
G Q+ KP+ P KGK + V R +I CF
Sbjct: 274 SGKPSYQKEEKFGYQNDSKPFVKPKPVDLDPKGKGKEVITR-------ARDIRCFKSQGL 326
Query: 265 GHKSNACPSE 274
H ++ C ++
Sbjct: 327 RHYASKCSNK 336
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 43.5 bits (101), Expect = 2e-04
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 113 FRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLKCI 172
F EF ++YFP++ + E FLEL +G +S+ EY +F L + + ++
Sbjct: 157 FVAEFNAKYFPQEALDRMEARFLELTKGELSVREYGREFKRLLVYAGRGMEDDQAQMR-- 214
Query: 173 KFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTKAHYKIVNERKTKGQQSRPKPYSA 232
+F GLR D++ Q + L + E+D + V+ Q + + A
Sbjct: 215 RFLRGLRPDLRVRCRVSQYATKAAL--TAAEVEEDLQRQVVAVS---PSVQPKKIQQQVA 269
Query: 233 PADKGKQRMVEDRR 246
P+ GK V+ R+
Sbjct: 270 PSKGGKPAQVQKRK 283
>At2g06890 putative retroelement integrase
Length = 1215
Score = 43.1 bits (100), Expect = 2e-04
Identities = 42/187 (22%), Positives = 75/187 (39%), Gaps = 37/187 (19%)
Query: 111 AVFRREFLSRYFPEDVRGKKEIEFLELKQGNMSMTEYAAKFVELAKFYPHYAAETTEFLK 170
A+ R+ F+ ++ ++ ++ L QGN S+ EY K +E + + L
Sbjct: 3 AIMRKRFVPSHYHRELH----LKLRNLTQGNRSVEEYY-KEMETLMLRADISEDREATLS 57
Query: 171 CIKFENGLRADIKRAIGYQQIRVFSELVNSCRIYEDDTK--------------AHYKIVN 216
+F L DI+ + Q E+++ ++E K A
Sbjct: 58 --RFLGDLNRDIQDRLETQYYVQIEEMLHKAILFEQQVKRKSSSRSSYGSGTIAKPTYQR 115
Query: 217 ERKTKGQQSRP--------KPYSAPAD-KGKQRMVEDRRPKKKDALAEIICFNCGEKGHK 267
E +T ++P KPY+A D KGK + R + ++ C+ C KGH
Sbjct: 116 EERTSSYHNKPIVSPRAESKPYAAVQDHKGKAEISTSR-------VRDVRCYKCQGKGHY 168
Query: 268 SNACPSE 274
+N CP++
Sbjct: 169 ANECPNK 175
>At2g37340 unknown protein
Length = 249
Score = 40.8 bits (94), Expect = 0.001
Identities = 23/64 (35%), Positives = 34/64 (52%), Gaps = 6/64 (9%)
Query: 258 CFNCGEKGHKSNACPSE--IKRCFRCGKKGH-KSNAEIICFNIQHEG---RASHRGRSPA 311
CFNCG GH + C + +C+RCG++GH + N + ++ G R+ R RSP
Sbjct: 60 CFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPR 119
Query: 312 NRSS 315
R S
Sbjct: 120 RRRS 123
>At1g75560 DNA-binding protein
Length = 257
Score = 39.3 bits (90), Expect = 0.003
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 257 ICFNCGEKGHKSNACPSEIKRCFRCGKKGH---KSNAEIICFNIQHEGRASHRGRSPANR 313
+C NCG GH + C +E RC+ C + GH + E IC + G++ HR R +N
Sbjct: 75 VCNNCGLPGHIAAECTAE-SRCWNCREPGHVASNCSNEGICHSC---GKSGHRARDCSNS 130
Query: 314 SS 315
S
Sbjct: 131 DS 132
Score = 37.4 bits (85), Expect = 0.011
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 251 DALAEIICFNCGEKGHKSNACPSEIKRCFRCGKKGHKS 288
+ AE C+NC E GH ++ C +E C CGK GH++
Sbjct: 88 ECTAESRCWNCREPGHVASNCSNE-GICHSCGKSGHRA 124
Score = 36.6 bits (83), Expect = 0.019
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 221 KGQQSRPKPYSAPADKGKQRMVEDRRPKKKDAL-AEIICFNCGEKGHKSNACPS 273
KG + S D G QR R + ++ + A IIC NCG +GH++ CPS
Sbjct: 193 KGDSNYSDRGSRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGHRAYECPS 246
Score = 32.7 bits (73), Expect = 0.27
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 255 EIICFNCGEKGHKSNACPS------EIKRCFRCGKKGH 286
E IC +CG+ GH++ C + +++ C C K+GH
Sbjct: 111 EGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGH 148
Score = 27.7 bits (60), Expect = 8.7
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 257 ICFNCGEKGHKSNACPSEIKRCFRCGKKGH 286
+C NC ++GH + C ++ K C C GH
Sbjct: 139 LCNNCFKQGHLAADCTND-KACKNCRTSGH 167
>At3g43590 putative protein
Length = 551
Score = 38.9 bits (89), Expect = 0.004
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 256 IICFNCGEKGHKSNACPSEIKR---CFRCGKKGH 286
+ C++CGE+GH S CP+ KR CF CG H
Sbjct: 166 VSCYSCGEQGHTSFNCPTPTKRRKPCFICGSLEH 199
Score = 33.9 bits (76), Expect = 0.12
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 258 CFNCGEKGHKSNACPSEIK-----------RCFRCGKKGHKS----NAEIICFNIQHEGR 302
C+ CGE+GH + CP+ C+RC GH + N+ + +
Sbjct: 327 CYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVSKRDRETST 386
Query: 303 ASHRGRSPANRSS 315
SH+ R +S
Sbjct: 387 TSHKSRKKNKENS 399
Score = 33.1 bits (74), Expect = 0.21
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 258 CFNCGEKGHKSNACPSEIKR------CFRCGKKGH 286
C+ C + GH++ CP + K C RCG GH
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGH 244
Score = 32.0 bits (71), Expect = 0.46
Identities = 14/51 (27%), Positives = 20/51 (38%), Gaps = 20/51 (39%)
Query: 256 IICFNCGEKGHKSNAC--------------------PSEIKRCFRCGKKGH 286
+ C+ CG+ GH AC E C+RCG++GH
Sbjct: 285 VSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGH 335
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 18/95 (18%)
Query: 243 EDRRPKKKDALAEIICFNCGEKGHKSNACPSEIKR-------CFRCGKKGHKSNAE---- 291
+D K K+ +C CG+ GH C E + C+ C GH E
Sbjct: 221 KDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEPGNS 280
Query: 292 -------IICFNIQHEGRASHRGRSPANRSSAEVP 319
C + H G A R +N + + P
Sbjct: 281 LSWAVSCYRCGQLGHSGLACGRHYEESNENDSATP 315
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.133 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,216,977
Number of Sequences: 26719
Number of extensions: 310791
Number of successful extensions: 1171
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 165
length of query: 320
length of database: 11,318,596
effective HSP length: 99
effective length of query: 221
effective length of database: 8,673,415
effective search space: 1916824715
effective search space used: 1916824715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC130806.3