BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130801.11 - phase: 0
(275 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16680 putative non-LTR retroelement reverse transcriptase 72 3e-13
At4g29090 putative protein 65 4e-11
At2g31520 putative non-LTR retroelement reverse transcriptase 65 4e-11
At2g45230 putative non-LTR retroelement reverse transcriptase 64 1e-10
At2g17610 putative non-LTR retroelement reverse transcriptase 62 3e-10
At2g17910 putative non-LTR retroelement reverse transcriptase 61 6e-10
At3g09510 putative non-LTR reverse transcriptase 61 7e-10
At2g25550 putative non-LTR retroelement reverse transcriptase 61 7e-10
At2g41580 putative non-LTR retroelement reverse transcriptase 59 3e-09
At2g40680 putative non-LTR retroelement reverse transcriptase 59 4e-09
At2g18820 putative non-LTR retroelement reverse transcriptase 59 4e-09
At4g11710 putative protein 58 6e-09
At4g09710 RNA-directed DNA polymerase -like protein 58 6e-09
At3g45550 putative protein 57 8e-09
At3g32110 non-LTR reverse transcriptase, putative 57 8e-09
At2g23880 putative non-LTR retroelement reverse transcriptase 57 1e-08
At2g15510 putative non-LTR retroelement reverse transcriptase 55 5e-08
At1g23990 reverse transcriptase, putative 54 1e-07
At2g19100 putative non-LTR retroelement reverse transcriptase 53 2e-07
At2g01550 putative non-LTR retroelement reverse transcriptase 53 2e-07
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 72.0 bits (175), Expect = 3e-13
Identities = 70/275 (25%), Positives = 113/275 (40%), Gaps = 33/275 (12%)
Query: 8 VRRKVGDGSDTLFWFHWWCGGAPLREQFPRLFDLAVDKYTTVANML-PLRLSRGGEGWSW 66
++R +G+G T W W R P ++ + V++++ PL
Sbjct: 874 LKRLIGNGEQTNVWIDKWLFDGHSRR--PMNLHSLMNIHMKVSHLIDPLT---------- 921
Query: 67 RRW-LWAWEEIVLEECRTLLLDVSLFTDISDSWIWLPNPIGGYSVRGAYEVLTATG--NS 123
R W L E+ E+ L++ DS+ W G Y+V+ YE + N
Sbjct: 922 RNWNLKKLTELFHEKDVQLIMHQRPLISSEDSYCWAGTNNGLYTVKSGYERSSRETFKNL 981
Query: 124 ITDSAV--------DLIWHHQVPLKVSIFAWRLMRDRLSTRSNLASRGILQLDTALCVTG 175
++ V D +W + K+ +F W+ ++ L+ L SRGI D C+
Sbjct: 982 FKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADG--CLFC 1039
Query: 176 CGSIETSDHLFLSCPFFAELWEQLRLWIGCCVGVDSNIIS--NHFVQFTCLSGFAKARRS 233
IET +HL CPF ++W L L G ++I S NH +Q + G + R+
Sbjct: 1040 KEEIETINHLLFQCPFARQVW-ALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHMRT 1098
Query: 234 FLQLIWLLTTWVIWSERNNRLFKNVVTEAPRLLDK 268
WLL W IW RN LF+ + ++ K
Sbjct: 1099 VSP--WLL--WEIWKNRNKTLFQGTGLTSSEIVAK 1129
>At4g29090 putative protein
Length = 575
Score = 65.1 bits (157), Expect = 4e-11
Identities = 64/269 (23%), Positives = 111/269 (40%), Gaps = 18/269 (6%)
Query: 9 RRKVGDGSDTLFWFHWWCGGAPLREQFPRLFDLAVDKYTTVANMLPLRLSRGGEGWSWRR 68
R VG+G D + W H W P R+ + +Y +V+++L + G WR+
Sbjct: 126 RAVVGNGEDIIIWRHKWLDSKPASAAL-RMQRVPPQEYASVSSILKVSDLIDESGREWRK 184
Query: 69 WLWAWEEIVLEECRTLLLDVSL-FTDISDSWIWLPNPIGGYSVRGAYEVLT------ATG 121
+ E + E R L+ ++ I DS+ W G Y+V+ Y VLT ++
Sbjct: 185 DV--IEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSP 242
Query: 122 NSITDSAVD----LIWHHQVPLKVSIFAWRLMRDRLSTRSNLASRGILQLDTALCVTGCG 177
+++ +++ IW Q K+ F W+ + + L LA R + + + C
Sbjct: 243 QEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK 302
Query: 178 SIETSDHLFLSCPFFAELWEQLRLWIGCCVGVDSNIISNHFVQFTCLSGFAKARRSFLQL 237
ET +HL C F W + I +I N + F +G + ++ +
Sbjct: 303 --ETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLV 360
Query: 238 IWLLTTWVIWSERNNRLFKNVVTEAPRLL 266
WLL W +W RN +F+ A +L
Sbjct: 361 PWLL--WRLWKNRNELVFRGREFNAQEVL 387
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 65.1 bits (157), Expect = 4e-11
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 96 DSWIWLPNPIGGYSVRGAYEVLTATGNSITDS------AVDL---IWHHQVPLKVSIFAW 146
D IW N G Y+VR Y +LT ++ + ++DL IW+ + K+ F W
Sbjct: 1157 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 1216
Query: 147 RLMRDRLSTRSNLASRGILQLDTALCVTGCGSIETSDHLFLSCPFFAELWEQLRLWIGCC 206
R + L+T L +RG +++D +C E+ +H +CPF W W+
Sbjct: 1217 RALSQALATTERLTTRG-MRID-PICPRCHRENESINHALFTCPFATMAW-----WLSDS 1269
Query: 207 VGVDSNIISN----------HFVQFTCLSGFAKARRSFLQLIWLLTTWVIWSERNNRLFK 256
+ + ++SN +FVQ T +S F K L +WL+ W IW RNN +F
Sbjct: 1270 SLIRNQLMSNDFEENISNILNFVQDTTMSDFHK-----LLPVWLI--WRIWKARNNVVF- 1321
Query: 257 NVVTEAP 263
N E+P
Sbjct: 1322 NKFRESP 1328
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 63.5 bits (153), Expect = 1e-10
Identities = 67/279 (24%), Positives = 103/279 (36%), Gaps = 32/279 (11%)
Query: 8 VRRKVGDGSDTLFWFHWWCGGAPLREQFPRLFDLAVDKYTTVA-NMLPLRLSRGGEGWSW 66
+R +G+G W W G P + V +Y + +++ L G W+W
Sbjct: 922 IRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNW 981
Query: 67 RRWLWAWEEIVLEECRTLLLDVSLFTDISDSWIWLPNPIGGYSVRGAYEVLTATGNSIT- 125
+ + E L + D + W + G YSV+ Y V+T N
Sbjct: 982 NLVSLLFPDNTQENILALRPGGK---ETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNN 1038
Query: 126 ---------DSAVDLIWHHQVPLKVSIFAWRLMRDRLSTRSNLASRGILQLDTALCVTGC 176
D IW VP K+ F WR + + LS SNLA R + + + CV
Sbjct: 1039 PQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKS--CVRCP 1096
Query: 177 GSIETSDHLFLSCPFFAELWEQLRL-------WIGCCVGVDSNIISNHFVQFTCLSGFAK 229
ET +HL CPF W L W +++S H Q +
Sbjct: 1097 SHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQ-------PE 1149
Query: 230 ARRSFLQLIWLLTTWVIWSERNNRLFKNVVTEAPRLLDK 268
+ W+L W +W RN+ +FK AP+++ K
Sbjct: 1150 ESDHHALIPWIL--WRLWKNRNDLVFKGREFTAPQVILK 1186
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 62.0 bits (149), Expect = 3e-10
Identities = 55/191 (28%), Positives = 78/191 (40%), Gaps = 23/191 (12%)
Query: 92 TDISDSWIWLPNPIGGYSVRGAYEVLTATG----------NSITDSAVDL-IWHHQVPLK 140
T +D+ W+ G YSV+ Y +L N ++ V IW P K
Sbjct: 450 TGANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPK 509
Query: 141 VSIFAWRLMRDRLSTRSNLASRGILQLDTALCVTGCG-SIETSDHLFLSCPFFAELWEQL 199
+ F WR + L T NL R ++ DT CG + E +HL C E+WEQ
Sbjct: 510 IKHFWWRSAHNALPTAGNLKRRRLITDDTC---QRCGEASEDVNHLLFQCRVSKEIWEQA 566
Query: 200 RLWIGCCVGVDSNIISNHFVQFTCLSGFAKARRSFLQLIWL--LTTWVIWSERNNRLFKN 257
I C G +++SN F Q L K +S + + L W IW RN+ +F N
Sbjct: 567 H--IKLCPG--DSLMSNSFNQ--NLESIQKLNQSARKDVSLFPFIGWRIWKMRNDLIFNN 620
Query: 258 VVTEAPRLLDK 268
P + K
Sbjct: 621 KRWSIPDSIQK 631
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 61.2 bits (147), Expect = 6e-10
Identities = 66/278 (23%), Positives = 106/278 (37%), Gaps = 39/278 (14%)
Query: 8 VRRKVGDGSDTLFWFHWWCGGAPLREQFPRLFDLAVDKYTTVANMLPLRLSRGGEGWSWR 67
+R +G+G T W W R R + VD + + W+
Sbjct: 900 LRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQL------IDPTSRNWNLN 953
Query: 68 --RWLWAWEEIVLEECRTLLLDVSLFTDISDSWIWLPNPIGGYSVRGAYEVLT------- 118
R L+ W+++ + +L LF DS+ WL + G YSV+ YE L+
Sbjct: 954 MLRDLFPWKDVEI-----ILKQRPLFFK-EDSFCWLHSHNGLYSVKTGYEFLSKQVHHRL 1007
Query: 119 ---ATGNSITDSAVDLIWHHQVPLKVSIFAWRLMRDRLSTRSNLASRGILQLDTAL-CVT 174
A +S D IW+ K+ IF W+ + + L +RGI D L C T
Sbjct: 1008 YQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDT 1067
Query: 175 GCGSIETSDHLFLSCPFFAELWEQLRLWIGCCVGVDSNIISNHFVQFTCLSGFAKAR--R 232
ET +H+ CP ++W L S ++ + + L +
Sbjct: 1068 ---ENETINHILFECPLARQVWAITHL-----SSAGSEFSNSVYTNMSRLIDLTQQNDLP 1119
Query: 233 SFLQLI--WLLTTWVIWSERNNRLFKNVVTEAPRLLDK 268
L+ + W+L W +W RN LF+ + L+DK
Sbjct: 1120 HHLRFVSPWIL--WFLWKNRNALLFEGKGSITTTLVDK 1155
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 60.8 bits (146), Expect = 7e-10
Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 44/192 (22%)
Query: 96 DSWIWLPNPIGGYSVRGAYEVLTATGNSITDS------AVDL---IWHHQVPLKVSIFAW 146
D IW N G Y+VR Y +LT ++ + ++DL IW+ + K+ F W
Sbjct: 117 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 176
Query: 147 RLMRDRLSTRSNLASRGILQLDTALCVTGCGSIETSDHLFLSCPFFAELWEQLRLWIGCC 206
R + L+T L +RG +++D + C E+ +H +CPF W
Sbjct: 177 RALSQALATTERLTTRG-MRIDPS-CPRCHRENESINHALFTCPFATMAWRL-------- 226
Query: 207 VGVDSNIISN---------------HFVQFTCLSGFAKARRSFLQLIWLLTTWVIWSERN 251
DS++I N +FVQ T +S F K L +WL+ W IW RN
Sbjct: 227 --SDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHK-----LLPVWLI--WRIWKARN 277
Query: 252 NRLFKNVVTEAP 263
N +F N E+P
Sbjct: 278 NVVF-NKFRESP 288
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 60.8 bits (146), Expect = 7e-10
Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 44/192 (22%)
Query: 96 DSWIWLPNPIGGYSVRGAYEVLTATGNSITDS------AVDL---IWHHQVPLKVSIFAW 146
D IW N G Y+VR Y +LT ++ + ++DL IW+ + K+ F W
Sbjct: 1383 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 1442
Query: 147 RLMRDRLSTRSNLASRGILQLDTALCVTGCGSIETSDHLFLSCPFFAELWEQLRLWIGCC 206
R + L+T L +RG +++D + C E+ +H +CPF W
Sbjct: 1443 RALSQALATTERLTTRG-MRIDPS-CPRCHRENESINHALFTCPFATMAWRL-------- 1492
Query: 207 VGVDSNIISN---------------HFVQFTCLSGFAKARRSFLQLIWLLTTWVIWSERN 251
DS++I N +FVQ T +S F K L +WL+ W IW RN
Sbjct: 1493 --SDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHK-----LLPVWLI--WRIWKARN 1543
Query: 252 NRLFKNVVTEAP 263
N +F N E+P
Sbjct: 1544 NVVF-NKFRESP 1554
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 58.9 bits (141), Expect = 3e-09
Identities = 57/268 (21%), Positives = 107/268 (39%), Gaps = 39/268 (14%)
Query: 8 VRRKVGDGSDTLFWF-HWWCGGAPLREQFPRLFDLAVDKYTTVANMLPLRLSRGGEGWSW 66
+++ +G+G +T W +W P R P + VD V+ ++ SR W+
Sbjct: 651 LKKIIGNGENTYVWMDNWIFDDKPRR---PESLQIMVDIQLKVSQLID-PFSRN---WNL 703
Query: 67 R--RWLWAWEEIVLEECRTLLLDVSLFTDISDSWIWLPNPIGGYSVRGAYEVLT------ 118
R L+ W+EI ++ DS+ W G Y+V+ Y++ +
Sbjct: 704 NMLRDLFPWKEI------QIICQQRPMASRQDSFCWFGTNHGLYTVKSEYDLCSRQVHKQ 757
Query: 119 ----ATGNSITDSAVDLIWHHQVPLKVSIFAWRLMRDRLSTRSNLASRGILQLDTALCVT 174
A + IW+ K+ +F W++++ ++ L +RG+L D
Sbjct: 758 MFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIED------ 811
Query: 175 GCGSI----ETSDHLFLSCPFFAELWEQLRLWIGCCVGVDSNIISNHFVQFTCLSGFAKA 230
GC ET +H+ CP ++W + DS + + V C +
Sbjct: 812 GCSMCPEKNETLNHILFQCPLARQVWALTPMQSPNHGFGDSIFTNVNHVIGNCHNTELSP 871
Query: 231 RRSFLQLIWLLTTWVIWSERNNRLFKNV 258
++ W++ W++W RN RLF+ +
Sbjct: 872 HLRYVS-PWII--WILWKNRNKRLFEGI 896
>At2g40680 putative non-LTR retroelement reverse transcriptase
Length = 296
Score = 58.5 bits (140), Expect = 4e-09
Identities = 63/258 (24%), Positives = 102/258 (39%), Gaps = 33/258 (12%)
Query: 6 DSVRRKVGDGSDTLFWFHWWCGGAPLREQFPR--LFDLAVDKYTTVANMLPLRLSRGGEG 63
D + ++ G T FW+ W L + F DL + K TV ++L + R
Sbjct: 14 DFYQVEIKSGRGTSFWYDTWSSLGNLFDTFGDRGCIDLGITKEATVGDVLASQRGRRHRV 73
Query: 64 WSWRRWLWAWEEIVLE-ECRTLLLDVSLFTDISDSWIWLPNPIGGYSVRGAYEVLTATGN 122
+ R EE++ E R + + L W W +S +++L
Sbjct: 74 ETLNRV----EEVIRETRVRRKVEEEDLIL-----WKWKTGFKHNFSSNETWKMLRVE-K 123
Query: 123 SITDSAVDLIWHHQVPLKVSIFAWRLMRDRLSTRSNLASRGILQLDTALCVTGCGSIETS 182
I A + IW + K W + DRL+T + + S Q+DT C +ET
Sbjct: 124 PICRWAKE-IWFSEATPKFFFITWLAIHDRLTTGARMRSWNT-QVDTT-CKFCAEPVETR 180
Query: 183 DHLFLSCPFFAELWEQLRLWIGCCVGVDSNIISNHFVQ-----FTCLSGFAKARRSFLQL 237
+HLF CP+ ++WE+L ++ H+ T L+ + R+ L L
Sbjct: 181 NHLFFQCPYSTQVWEKLM----------KGLLQGHYTSSWDRIVTLLTSSSLGRKHLLLL 230
Query: 238 --IWLLTTWVIWSERNNR 253
+ + IW ERNNR
Sbjct: 231 RYTFQIKVHTIWRERNNR 248
>At2g18820 putative non-LTR retroelement reverse transcriptase
Length = 1412
Score = 58.5 bits (140), Expect = 4e-09
Identities = 40/126 (31%), Positives = 60/126 (46%), Gaps = 13/126 (10%)
Query: 132 IWHHQVPLKVSIFAWRLMRDRLSTRSNLAS--RGILQLDTALCVTGCGSIETSDHLFLSC 189
IW K + +W DRL+T +AS RGI +++CV S E+ DHLF SC
Sbjct: 1243 IWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGI----SSVCVLCNISAESRDHLFFSC 1298
Query: 190 PFFAELWEQLRLWIGCCVGVDSNIISNHFVQFTCLSG--FAKARRSFLQLIWLLTTWVIW 247
F + +W++L + C +N LSG F+ +R L+ ++ T +W
Sbjct: 1299 NFSSHIWDRLTRRLLLC-----RYTTNFPALLLLLSGQDFSGTKRFLLRYVFQATIHTLW 1353
Query: 248 SERNNR 253
ERN R
Sbjct: 1354 RERNKR 1359
>At4g11710 putative protein
Length = 473
Score = 57.8 bits (138), Expect = 6e-09
Identities = 66/269 (24%), Positives = 105/269 (38%), Gaps = 33/269 (12%)
Query: 11 KVGDGSDTLFWFHWWCGGAPLREQFPR--LFDLAVDKYTTVANMLPLRLSRGGEGWSWRR 68
++ +G+ T FW+ W L + DL ++K+ TV E W RR
Sbjct: 196 EINNGARTSFWYDDWSDLGRLIDSAGDRGAIDLGINKHATVV-----------EAWGNRR 244
Query: 69 WLWAWEEIVLEECRTLLLDVSLFTDISDSWIWLPNPI---GGYSVRGAYEVLTATGNSIT 125
+ L+L + D +W +S + + + N +
Sbjct: 245 RRRHRTNFLNRVEERLILSWNSRNQAEDRALWKGKENRFRSIFSTKDTWNHIRTVSNKV- 303
Query: 126 DSAVDLIWHHQVPLKVSIFAWRLMRDRLST--RSNLASRGILQLDTALCVTGCGSIETSD 183
+ +W Q K + W + +RLST R L + G+ A C+ ++E+ D
Sbjct: 304 -AWYKGVWFAQAIPKHAFCMWLAVHNRLSTGDRMTLWNMGV----DATCILCNKALESRD 358
Query: 184 HLFLSCPFFAELWEQLRLWI-GCCVGVDSNIISNHFVQF--TCLSGFAKARRSFLQLIWL 240
HLF SCPF E+WE L I C D I N+ + ++GF R LQ
Sbjct: 359 HLFFSCPFATEIWEPLAKTIYNTCFYTDWQTIINNVSRNWPDRIAGF--LARCILQ---- 412
Query: 241 LTTWVIWSERNNRLFKNVVTEAPRLLDKI 269
+T + +W ERN R + RL+ I
Sbjct: 413 VTIYTLWRERNERKHGASPNSSSRLISWI 441
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 57.8 bits (138), Expect = 6e-09
Identities = 47/170 (27%), Positives = 69/170 (39%), Gaps = 14/170 (8%)
Query: 94 ISDSWIWLPNPIGGYSVRGAYEVLTATGNSITDSAVDLIWH------HQVPLKVSIFAWR 147
+ DS +WLP G Y+ + Y + A NS S +D W H P KV F W+
Sbjct: 933 LQDSLVWLPVKSGEYTTKTGYAL--AKLNSFPASQLDFNWQKNIWKIHTSP-KVKHFLWK 989
Query: 148 LMRDRLSTRSNLASRGILQLDTALCVTGCGSIETSDHLFLSCPFFAELWEQLRLWIGCCV 207
M+ L L+ R I + + CG E+S HL L CP+ ++WE +
Sbjct: 990 AMKGALPVGEALSRRNI---EAEVTCKRCGQTESSLHLMLLCPYAKKVWELAPVLFNPSE 1046
Query: 208 GVDSNIISNHFVQFTCLSGFAKARRSFLQLIWLLTTWVIWSERNNRLFKN 257
S++ ++ S WLL W +W RN +F N
Sbjct: 1047 ATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLL--WHLWKARNRLIFDN 1094
>At3g45550 putative protein
Length = 851
Score = 57.4 bits (137), Expect = 8e-09
Identities = 53/180 (29%), Positives = 76/180 (41%), Gaps = 14/180 (7%)
Query: 95 SDSWIWLPNPIGGYSVRGAYEVLTAT-GNSITDSA-----VDL---IWHHQVPLKVSIFA 145
+D IW N G Y+VR Y + T N+I A VDL IW+ + K+ F
Sbjct: 621 TDRLIWSYNSTGDYTVRSGYWLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFL 680
Query: 146 WRLMRDRLSTRSNLASRGILQLDTALCVTGCGSIETSDHLFLSCPFFAELWEQLRLWIGC 205
WR++ L T L +RG +++D C E+ +H +CPF W +
Sbjct: 681 WRILSKALPTTDRLTTRG-MRIDPG-CPRCRRENESINHALFTCPFATMAWRLSDTPLYR 738
Query: 206 CVGVDSNIISNHFVQFTCLSGFAKARRSFLQLIWLLTTWVIWSERNNRLFKNVVTEAPRL 265
+ +NI N L L WLL W IW RNN +F N + E+P +
Sbjct: 739 SSILSNNIEDNISNILLLLQNTTITDSQKLIPFWLL--WRIWKARNNVVFNN-LRESPSI 795
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 57.4 bits (137), Expect = 8e-09
Identities = 47/192 (24%), Positives = 79/192 (40%), Gaps = 16/192 (8%)
Query: 12 VGDGSDTLFWFHWWCGGAPLREQFPRLFDLAVDKYTTVANMLPLRLSRGGEGWSWRRWLW 71
+GDG FW W P+ + + L++ + A L R G GW +
Sbjct: 1468 IGDGRQIRFWTDRWLSETPIADD--SIVPLSLAQMLCTAR----DLWRDGTGWDMSQIA- 1520
Query: 72 AWEEIVLEECRTLLLDVSL--FTDISDSWIWLPNPIGGYSVRGAYEVLTATGNSITD--S 127
V + R LL V + T D W G ++V+ A+ +LT + D S
Sbjct: 1521 ---PFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSS 1577
Query: 128 AVDLIWHHQVPLKVSIFAWRLMRDRLSTRSNLASRGILQLDTALCVTGCGSIETSDHLFL 187
+W Q P +V +F W ++ + T S R + D+ +C G IE+ H+
Sbjct: 1578 LYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHL--CDSDVCQVCRGGIESILHVLR 1635
Query: 188 SCPFFAELWEQL 199
CP + +W+++
Sbjct: 1636 DCPAMSGIWDRI 1647
>At2g23880 putative non-LTR retroelement reverse transcriptase
Length = 1216
Score = 56.6 bits (135), Expect = 1e-08
Identities = 72/282 (25%), Positives = 107/282 (37%), Gaps = 58/282 (20%)
Query: 11 KVGDGSDTLFWFHWWCGGAPLREQFPR--LFDLAVDKYTTVANMLPLRLSRGGEGWSWRR 68
+V +G +T FWF W PL D+ + ++ T+A E WS RR
Sbjct: 668 EVNNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISRHMTLA-----------EAWSRRR 716
Query: 69 WLWAWEEIVLEECRTLLLDVSLFTDIS--DSWIWLPNPIGGYSVRGAYEVLTA------T 120
EI L E +LL +I D+ +W RG +V A T
Sbjct: 717 RKRHRVEI-LNEFEEILLQKYQHRNIELEDAILW----------RGKEDVFKARFSTKDT 765
Query: 121 GNSITDSAVDLIWH------HQVPLKVSIFAWRLMRDRLSTRSNLASRGILQLDTALCVT 174
N I S+ WH H P K S AW +R+RLST + + T CV
Sbjct: 766 WNHIRTSSNQRAWHKGVWFAHATP-KFSFCAWLAIRNRLSTGDRMMTWNNGTPTT--CVF 822
Query: 175 GCGSIETSDHLFLSCPFFAELWEQLRLWIGCCVGVDSNIISNHF-------VQFTCLSGF 227
+ET DHLF C + +E+W + N+ + F V + S
Sbjct: 823 CSSPMETRDHLFFQCCYSSEIW----------TSIAKNVYKDRFSTKWSAVVNYISDSQP 872
Query: 228 AKARRSFLQLIWLLTTWVIWSERNNRLFKNVVTEAPRLLDKI 269
+ + + + ++ IW ERN+R A L+ +I
Sbjct: 873 DRIQSFLSRYTFQVSIHSIWRERNSRRHGEKSRSASNLIRQI 914
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 54.7 bits (130), Expect = 5e-08
Identities = 58/267 (21%), Positives = 106/267 (38%), Gaps = 27/267 (10%)
Query: 8 VRRKVGDGSDTLFWFHWWCGGAPLREQFPRLFDLAVD-KYTTVANMLPLRLSRGGEGWSW 66
+R++VG+G W W R R F + +D K + N E W
Sbjct: 698 LRKEVGNGKSLNVWMDPWIFDIAPRLPLQRHFSVNLDLKVNDLINF---------EDRCW 748
Query: 67 RRWLWAWEEIVLEECRTLLLDVSLFTDISDSWIWLPNPIGGYSVRGAYEV--------LT 118
+R L EE+ L+ + ++ D W+WL G YSV+ Y + L
Sbjct: 749 KRDLL--EELFYPTDVELITKRNPVVNMDDFWVWLHAKTGEYSVKSGYWLAFQSNKLDLI 806
Query: 119 ATGNSI--TDSAVDLIWHHQVPLKVSIFAWRLMRDRLSTRSNLASRGILQLDTALCVTGC 176
N + T+ + +W + K+ +F WR++ L + RG + +D + G
Sbjct: 807 QQANLLPSTNGLKEQVWSTKSSPKIKMFLWRILSAALPVADQIIRRG-MSIDPRCQICG- 864
Query: 177 GSIETSDHLFLSCPFFAELWEQLRLWIGCCVGVDSNIISNHFVQFTCLSGFAKARRSFLQ 236
E+++H+ +C ++W + +++I +N +QF ++
Sbjct: 865 DEGESTNHVLFTCSMARQVWALSGVPTPEFGFQNASIFAN--IQFLFELKKMILVPDLVK 922
Query: 237 LIWLLTTWVIWSERNNRLFKNVVTEAP 263
W W +W R N+LF + +T P
Sbjct: 923 RSWPWVLWRLWKNR-NKLFFDGITFCP 948
>At1g23990 reverse transcriptase, putative
Length = 657
Score = 53.5 bits (127), Expect = 1e-07
Identities = 48/145 (33%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 120 TGNSITDSAVDLIWH------HQVPLKVSIFAWRLMRDRLSTRSNLASRGILQLDTAL-- 171
T N +++ + WH H P K S AW +++RLST + LQ + L
Sbjct: 477 TWNQTRNTSTPVTWHMGIWFAHATP-KFSFCAWLAVQNRLSTGDKM-----LQWNRRLSP 530
Query: 172 -CVTGCGSIETSDHLFLSCPFFAELWEQLRLWIGCCVGVDSNIISNHFVQFTCLSGFAKA 230
CV +IET +HLF SC + AE+WE L I + +N T +S +
Sbjct: 531 TCVLCNNNIETRNHLFFSCCYTAEIWENLAKNI-----YKAKFSTNWSTILTSVSTTWRN 585
Query: 231 R-RSFL-QLIWLLTTWVIWSERNNR 253
R SFL + I+ T IW ERN R
Sbjct: 586 RTESFLARYIFQATIHTIWHERNGR 610
>At2g19100 putative non-LTR retroelement reverse transcriptase
Length = 1447
Score = 53.1 bits (126), Expect = 2e-07
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 108 YSVRGAYEVLTATGNSITDSAVDLIWHHQVPLKVSIFAWRLMRDRLSTRSNLAS-RGILQ 166
+S R + + T +T +W +Q K S W DRLST +A+ +G+
Sbjct: 1262 FSTRDTWNNIRTTATKVT--WYKGVWFYQATPKFSFCVWLAALDRLSTGDRMANWKGV-- 1317
Query: 167 LDTALCVTGCGSIETSDHLFLSCPFFAELWEQLRLWIGCCVGVDSNIISNHF-----VQF 221
+ CV ++ DHLF +CP+ +E+W NI++ F +
Sbjct: 1318 -SSGSCVFCNHPTKSRDHLFFNCPYSSEVW----------TVTAKNILTTRFTTDWHLLL 1366
Query: 222 TCLSGFAKAR-RSFL-QLIWLLTTWVIWSERNNRLFKNVVTEAPRLL 266
+S + R +FL + + + + IWSERN R N + A RL+
Sbjct: 1367 NTVSSLQQNRVENFLVRYAFQASVYSIWSERNRRRHGNTLHSATRLI 1413
>At2g01550 putative non-LTR retroelement reverse transcriptase
Length = 1449
Score = 53.1 bits (126), Expect = 2e-07
Identities = 66/268 (24%), Positives = 108/268 (39%), Gaps = 33/268 (12%)
Query: 9 RRKVGDGSDTLFWFHWWCGGAPLREQFPRLFDLAVDKYTTVANMLPLRLSRGGEGWSWRR 68
+++V G +T FW+ W RL ++A D+ T +M R E W+ RR
Sbjct: 1171 KKEVNTGRNTFFWYDDW-------STLGRLVEIAGDRGTI--DMGISRKMTLEEAWNGRR 1221
Query: 69 WLWAWEEIVLEECRTLLLDVSLFTDISDSWIWLPNPIGGYSVRGAYEVLTATGNSITDSA 128
+ ++ + L L D +W R + T N+
Sbjct: 1222 QRRHRDNVLNQMEEALELTRQRRNGNDDVTLWKGK---NDDYRHCFST-KETWNNTRTMG 1277
Query: 129 VDLIWH------HQVPLKVSIFAWRLMRDRLSTRSNLA--SRGILQLDTALCVTGCGSIE 180
+++ WH H P K S W + DRLST + +RG+ C+ + E
Sbjct: 1278 IEVPWHKGVWFTHSTP-KFSFCVWLAVYDRLSTGDKMLLWNRGL----QGTCLLCRNATE 1332
Query: 181 TSDHLFLSCPFFAELWEQLRLWIGCCVGVDSNIISNHFVQFTCLSGFAKAR-RSFL-QLI 238
+ DHLF SC F +E+WE I S+ ++ T + K R SF+ + I
Sbjct: 1333 SRDHLFFSCSFSSEVWEMSAKSI-----YKSSYSTDWRHLLTKIQENWKDRVESFIARYI 1387
Query: 239 WLLTTWVIWSERNNRLFKNVVTEAPRLL 266
+ ++ + IW ERN R +A +L+
Sbjct: 1388 FQVSVYAIWRERNRRKHGRNPNQAAQLV 1415
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.326 0.140 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,773,497
Number of Sequences: 26719
Number of extensions: 280896
Number of successful extensions: 948
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 106
length of query: 275
length of database: 11,318,596
effective HSP length: 98
effective length of query: 177
effective length of database: 8,700,134
effective search space: 1539923718
effective search space used: 1539923718
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC130801.11