BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC129091.6 - phase: 0 /pseudo
(1077 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04920 unknown protein 340 2e-93
At3g14065 Na/Ca,K exchanger like protein 31 3.3
>At4g04920 unknown protein
Length = 1196
Score = 340 bits (873), Expect = 2e-93
Identities = 176/299 (58%), Positives = 203/299 (67%), Gaps = 40/299 (13%)
Query: 18 IEEVEAGTVFHIRLKQSPSTLLHKMNLHESMRRNFSAVAWCAKLNAIACATETCARIPRS 77
I+ V TVF ++LKQ S LLHKM++ E + RNFSAVAWC KLNAIACA+ETCARIP S
Sbjct: 79 IDPVSPATVFCVKLKQPNSNLLHKMSVPE-LCRNFSAVAWCGKLNAIACASETCARIPSS 137
Query: 78 SVNPPFWIPIHIVIPERPTENAVFNVVADSPLDSVQFIQWSPVCCPRALLIANFHGRVTI 137
N PFWIPIHI+IPERPTE AVFNVVADSP DSVQFI+WSP CPRALLIANFHGR+TI
Sbjct: 138 KANTPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITI 197
Query: 138 WTQPSHGPANLVIDTNCWLREHEWRQDTAVVTKWLSGYRWLSSKSSAPANLKSIFEEKFI 197
WTQP+ G ANLV D W EHEWRQD AVVTKWL+G
Sbjct: 198 WTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLTGA---------------------- 235
Query: 198 SQQSQTSGSVQLHWSQWPPTQNATLHKWFCTSKGLLACGPSGIITGDAIITDNGTLLVAG 257
S WP Q +T KWF T KGLL GPSGI+ DAIITD+G + VAG
Sbjct: 236 --------------SPWPSNQGSTAPKWFSTKKGLLGAGPSGIMAADAIITDSGAMHVAG 281
Query: 258 VPAVNPAAIIVWEVMPGRGNSLQFSPKKSINNGVPP-LSAPNWSGFAPL--YHFTARQF 313
VP VNP+ I+VWEV PG GN LQ +PK S + VPP LS+ +W+GFAPL Y F+ +++
Sbjct: 282 VPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLFSWQEY 340
Score = 244 bits (622), Expect = 2e-64
Identities = 157/347 (45%), Positives = 193/347 (55%), Gaps = 56/347 (16%)
Query: 738 TTISGGSTQMNAWVQEAIAKISSTSDGVSNLTPTSPIGGPSSLMPISINTETFPGTPAVR 797
TT S GS+ + AW+Q AIAKISS++DG SN T SPI G + MPISINT TFPGTPAVR
Sbjct: 832 TTNSSGSSHVQAWMQGAIAKISSSNDG-SNST-ASPISGSPTFMPISINTGTFPGTPAVR 889
Query: 798 LIGDCHFLQRLCQLLFFCFFFKRSQLV----------LYMNGLRRTAETS-------LVR 840
LIGDCHFL RLCQLL FCF + S+ L + E + L R
Sbjct: 890 LIGDCHFLHRLCQLLLFCFLQRSSRFPQRNADVSSQKLQTGATSKLEEVNSAKPTPALNR 949
Query: 841 SDDGQTGRAGQIVHGSKGGEEPSLGHIRLGTGNSGQGYSFKEAALY*G------------ 888
+D Q R Q+ G KG +E S ++G+GN+GQGY+++E +
Sbjct: 950 IEDAQGFRGAQLGTGVKGIDENSARTTKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGL 1009
Query: 889 --ELHCTS*GFGSIPCHTSACNFHYIKMA----------MQNIPRPRGVDDTRLLLRKLE 936
L + G G+I + +Y + MQN+PRPRG D LLLR+LE
Sbjct: 1010 AHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELE 1069
Query: 937 LLPPAEVWHRLNMFGGPCTDPDD----SPRPVRSNPLDSRSLESNNIDYGTN---GLWPR 989
L PP+E WHR N+FGGP ++P+D SN LD + I G N LWPR
Sbjct: 1070 LHPPSEEWHRRNLFGGPGSEPEDMILTDDVSKLSNSLDLPDTNFSGICDGYNRVHSLWPR 1129
Query: 990 KHRMIERDAAFALNTS------LDIMGSRRDVITTSWKTGLEGVWYK 1030
K RM ERDAAF NTS L IMGSRRDV+T +WKTGLEGVWYK
Sbjct: 1130 KRRMSERDAAFGSNTSVGLGAYLGIMGSRRDVVTATWKTGLEGVWYK 1176
Score = 76.3 bits (186), Expect = 9e-14
Identities = 38/57 (66%), Positives = 44/57 (76%)
Query: 537 AYVDSVLDLALSFFTRLRCYAKFCRTLASQAATAGNVSNQNMVASPAQNSTTPETSQ 593
AYVD+VLDLA F TRLR YA FCRTLAS AA+AG SN+N V SP QN+++P T Q
Sbjct: 753 AYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASSPATPQ 809
>At3g14065 Na/Ca,K exchanger like protein
Length = 643
Score = 31.2 bits (69), Expect = 3.3
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 808 LCQLLFFCFFFKRSQLVLYMNGLRRTAETSLVRSDDGQT 846
+C L+ FCFFF RS+L+ N L R A S V G T
Sbjct: 22 ICALVLFCFFFDRSELL--RNPLLRNA--SFVNGGSGST 56
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.340 0.148 0.510
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,509,170
Number of Sequences: 26719
Number of extensions: 989679
Number of successful extensions: 3249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3236
Number of HSP's gapped (non-prelim): 8
length of query: 1077
length of database: 11,318,596
effective HSP length: 110
effective length of query: 967
effective length of database: 8,379,506
effective search space: 8102982302
effective search space used: 8102982302
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC129091.6