BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC129091.5 - phase: 0 /pseudo
         (980 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g04920 unknown protein                                             654  0.0
At2g07700 putative retroelement pol polyprotein                        33  0.60
At3g14065 Na/Ca,K exchanger like protein                               31  3.0
At4g27850 putative proline-rich protein                                30  8.7

>At4g04920 unknown protein
          Length = 1196

 Score =  654 bits (1686), Expect = 0.0
 Identities = 384/741 (51%), Positives = 456/741 (60%), Gaps = 120/741 (16%)

Query: 357  LRPVVLNPIFGS----MDGNPPMRTVWESKVDISIPAT---------------------- 390
            ++PVVL+ IFG+      G  P +TVW S+VD+SIP T                      
Sbjct: 439  VQPVVLHQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPD 498

Query: 391  --DDKSKGIHFNPFDLPKYLGTLARVVFSAQGGEIAVAFFQGRVRIFSGSNFEPVTNYEI 448
              D+K+  + F+PFDLP  + TLAR+V+SA GGEIA+AF +G V IFSG  F PV NY+I
Sbjct: 499  SGDEKANKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQI 558

Query: 449  NVGSSISVPAFSATSCCSASVWHDTSKGEAMLKIIRVLPPPFPIGQEKATSSTWEHAISE 508
            NVGS+I+ PAFS TSCCSASVWHD +K  AMLKIIRVLPP  P  Q K   STWE AI+E
Sbjct: 559  NVGSAIAAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAE 618

Query: 509  RFWFSLLVGVDWWDVVGCTQRAAEEGIVSVNGVIAVLDADFHSLPTAQHRQQYCLGLDMI 568
            RFW+SLLVGVDWWD VGCTQ AAE+GIVS+N VIAV+DADFHSLP+ QHRQQY   LD I
Sbjct: 619  RFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRI 678

Query: 569  KCRLLVGSNAQEVRATVLDMQARVLLDMLGKGIESAL--------------------INP 608
            KCRLL G+NAQEVRA VLDMQAR+LLDMLGKGIESAL                    INP
Sbjct: 679  KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINP 738

Query: 609  SALLPDPWQASEEILSNFDMEEMAVEPELTPCIQAYVDSVIDLASHL-----------IT 657
             A+  DP   S   +  +    + +       ++ Y      LASH            +T
Sbjct: 739  EAMAVDPALVSS--IQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVT 796

Query: 658  RLRHYA------KIF-------------RTLANQAVTVASGST---------------SG 683
                 A      ++F              T    A T +SGS+               S 
Sbjct: 797  SPTQNASSPATPQVFPDKSLYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSN 856

Query: 684  GVPNLTLNPSISGPSSLMLISINTGTFPGTPAVRLIGDCHFLHRLCQLLFFCFFFKRSQL 743
               N T +P ISG  + M ISINTGTFPGTPAVRLIGDCHFLHRLCQLL FCF  + S+ 
Sbjct: 857  DGSNSTASP-ISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRF 915

Query: 744  ----ARYKSGLRRTAETS-------------LVRSNDGQTGRDRQIVPGSKGGEEPSPGP 786
                A   S   +T  TS             L R  D Q  R  Q+  G KG +E S   
Sbjct: 916  PQRNADVSSQKLQTGATSKLEEVNSAKPTPALNRIEDAQGFRGAQLGTGVKGIDENSART 975

Query: 787  VRLGNGNAGQGYSVEEVKVIFQVLLDLCRRTSGLQHPLPVSQVGSSNIQVQLHYIEGSYT 846
             ++G+GNAGQGY+ EEV+V+F +L+DLC+RTSGL HPLP SQVGS NIQV+LHYI+G+YT
Sbjct: 976  TKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYT 1035

Query: 847  VLPEVVEASLGPYMQNMPRLGDADDTGLLLRELQLHPPAEEWHQLNMFVRPCTDSND--- 903
            VLPEVVEA+LGP+MQNMPR   AD  GLLLREL+LHPP+EEWH+ N+F  P ++  D   
Sbjct: 1036 VLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMIL 1095

Query: 904  -TPKPFRSNPLDSRSLESNDIDYGTN---GLRPKKRRMIERDAAFGLNTSLGLGAYLGIM 959
                   SN LD      + I  G N    L P+KRRM ERDAAFG NTS+GLGAYLGIM
Sbjct: 1096 TDDVSKLSNSLDLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVGLGAYLGIM 1155

Query: 960  GSRRDVITTSWKTGLEGVWYK 980
            GSRRDV+T +WKTGLEGVWYK
Sbjct: 1156 GSRRDVVTATWKTGLEGVWYK 1176



 Score =  219 bits (559), Expect = 5e-57
 Identities = 116/207 (56%), Positives = 141/207 (68%), Gaps = 6/207 (2%)

Query: 6   ESEAEAEAAATVNDPMMEEEEVEAGTVFDISLEQSPSTSLHKITVHESMRSNFSAVAWCA 65
           + E E + +++ N   ME + V   TVF + L+Q  S  LHK++V E  R NFSAVAWC 
Sbjct: 64  DGEKEDDNSSSSN---MEIDPVSPATVFCVKLKQPNSNLLHKMSVPELCR-NFSAVAWCG 119

Query: 66  KLNVIACATETCVNGIPRSSVNPWFWIPIHIVIPERPTEIAAFNVVADSSLDSVQSIQWS 125
           KLN IACA+ETC   IP S  N  FWIPIHI+IPERPTE A FNVVADS  DSVQ I+WS
Sbjct: 120 KLNAIACASETCAR-IPSSKANTPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWS 178

Query: 126 PICCPRALLIANFQGRVTIWTQPSRGPPNLVIDTNCWQREHEWRQETAVVTKWLSGASPL 185
           P  CPRALLIANF GR+TIWTQP++G  NLV D   WQ EHEWRQ+ AVVTKWL+GASP 
Sbjct: 179 PTSCPRALLIANFHGRITIWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLTGASPW 238

Query: 186 DGPSFSVSVLYHNQER-FNFIGPKGLL 211
                S +  + + ++     GP G++
Sbjct: 239 PSNQGSTAPKWFSTKKGLLGAGPSGIM 265


>At2g07700 putative retroelement pol polyprotein
          Length = 543

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 40/169 (23%), Positives = 71/169 (41%), Gaps = 23/169 (13%)

Query: 663 AKIFRTLANQAVTVASGSTSGGVPNLTLNPSISGPSSLMLI-SINTGTFPGTPAVRLIGD 721
           +K  R +A+  ++V +GS +   P++ +  +I  PSS+ +  S+   T   +  +  I +
Sbjct: 250 SKFVRLVASSHLSVHTGSHTCSHPHVEVRSTIGNPSSIAVFDSLPVETLGTSSPIPRIVE 309

Query: 722 CHFLHRLCQ---LLFFCFFFKRSQLARYKSGLRRTAETSLVRSNDGQTGRDRQIVPGSKG 778
             F     +   L    F  K S +  Y SG   +++ + +  N     R+  +VP S+ 
Sbjct: 310 FPFSDESLKTPLLAVIPFDDKLSSIKHYVSG-ESSSDLATMSENSSTIVRESDLVPNSRL 368

Query: 779 GEEPSPGPVRLGNGNAGQGYSVEEVKVIFQVLLDLCRRTSGLQHPLPVS 827
            E               +GYS     V   + +D    TSGL H +P S
Sbjct: 369 VE--------------AKGYSTLSPNVGASMPID----TSGLSHAVPSS 399


>At3g14065 Na/Ca,K exchanger like protein
          Length = 643

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 728 LCQLLFFCFFFKRSQLARYKSGLRRTAETSLVRSNDGQT 766
           +C L+ FCFFF RS+L R  + L R A  S V    G T
Sbjct: 22  ICALVLFCFFFDRSELLR--NPLLRNA--SFVNGGSGST 56


>At4g27850 putative proline-rich protein
          Length = 577

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 425 VAFFQGRVRIFSGSNFEPVTNYEINVGSS 453
           +A  +G V I+ GS+ +P+TN EI  GSS
Sbjct: 430 IAKSKGNVEIYRGSSSKPLTNVEIYRGSS 458


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.327    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,146,376
Number of Sequences: 26719
Number of extensions: 966732
Number of successful extensions: 2705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2693
Number of HSP's gapped (non-prelim): 7
length of query: 980
length of database: 11,318,596
effective HSP length: 109
effective length of query: 871
effective length of database: 8,406,225
effective search space: 7321821975
effective search space used: 7321821975
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 65 (29.6 bits)