BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC128660.9 + phase: 0 /pseudo
(58 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10870 chorismate mutase CM2 66 3e-12
At1g69370 chorismate mutase like protein 45 7e-06
At3g29200 chorismate mutase 40 3e-04
At4g15140 unknown protein 26 3.3
At4g38630 multiubiquitin chain binding protein (MBP1) 26 4.3
At5g41020 putative protein 25 5.6
At4g00820 unknown protein 25 5.6
At1g54320 unknown protein 25 5.6
At5g37140 sen1-like protein 25 7.3
At1g64050 unknown protein 25 7.3
>At5g10870 chorismate mutase CM2
Length = 265
Score = 66.2 bits (160), Expect = 3e-12
Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDN--NDDNKGKQKFDPSMASTFYEKWVIPL 58
MKLLTF+ VEEMVKKR++KK F Q++ F++ D++K K K DP +AS Y +W+IPL
Sbjct: 192 MKLLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPL 251
>At1g69370 chorismate mutase like protein
Length = 316
Score = 45.1 bits (105), Expect = 7e-06
Identities = 23/59 (38%), Positives = 37/59 (61%), Gaps = 1/59 (1%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINF-DNNDDNKGKQKFDPSMASTFYEKWVIPL 58
M+LLT+++VEE+VKKR++ K +F QDI D + K PS+ + Y + ++PL
Sbjct: 244 MQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYGERIMPL 302
>At3g29200 chorismate mutase
Length = 340
Score = 39.7 bits (91), Expect = 3e-04
Identities = 19/66 (28%), Positives = 35/66 (52%), Gaps = 8/66 (12%)
Query: 1 MKLLTFKSVEEMVKKRLKKKTTLFRQDINF----DNNDDNKGKQ----KFDPSMASTFYE 52
M +LTF +VE+ +KKR++ KT + Q++ ++ +G + K P + Y
Sbjct: 261 MDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYG 320
Query: 53 KWVIPL 58
W++PL
Sbjct: 321 DWIMPL 326
>At4g15140 unknown protein
Length = 138
Score = 26.2 bits (56), Expect = 3.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 7 KSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPS 45
K ++ M K+ KKK+ L + DI NDD+ K PS
Sbjct: 91 KKMKMMSMKKNKKKSKLLKLDIPSMKNDDSSPKIGCFPS 129
>At4g38630 multiubiquitin chain binding protein (MBP1)
Length = 386
Score = 25.8 bits (55), Expect = 4.3
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Query: 7 KSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFD 43
K E+V KRLKK + +NF +DD + QK +
Sbjct: 122 KKALEIVGKRLKKNSVSL-DIVNFGEDDDEEKPQKLE 157
>At5g41020 putative protein
Length = 588
Score = 25.4 bits (54), Expect = 5.6
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 10 EEMVKKRLKKKTTLFR--QDINFDNNDDNKGKQK 41
+E+ +K KKK ++ +DIN D+ +D K K+K
Sbjct: 182 KEVKRKNNKKKPSVDSDVEDINLDSTNDGKKKRK 215
>At4g00820 unknown protein
Length = 534
Score = 25.4 bits (54), Expect = 5.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 9 VEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMAST 49
V+E K+ +K+ LFR+ N D+ G K P+ ST
Sbjct: 36 VDEDEDKKKEKRRWLFRKSTNHDSPVKTSGVGKDAPAQKST 76
>At1g54320 unknown protein
Length = 349
Score = 25.4 bits (54), Expect = 5.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 13 VKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMASTFYEKWV 55
V KR+K+ ++ Q NF N K + D + ST YE +
Sbjct: 113 VTKRMKQPIYVYYQLENFYQNHRRYVKSRSDSQLRSTKYENQI 155
>At5g37140 sen1-like protein
Length = 692
Score = 25.0 bits (53), Expect = 7.3
Identities = 13/40 (32%), Positives = 20/40 (49%)
Query: 4 LTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFD 43
+T ++V+ MV R + + NF +D KG KFD
Sbjct: 286 ITSENVKSMVTARKALQRVRYFLKENFSRDDFKKGSLKFD 325
>At1g64050 unknown protein
Length = 668
Score = 25.0 bits (53), Expect = 7.3
Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 5/47 (10%)
Query: 2 KLLTFKSVEEMVKKRLKK-----KTTLFRQDINFDNNDDNKGKQKFD 43
K L+ KS++ K ++K +TT+ D+N NN++NK + D
Sbjct: 540 KKLSQKSMKARKSKLIEKPLERHRTTVSSIDLNSSNNNNNKNHVRKD 586
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,383,371
Number of Sequences: 26719
Number of extensions: 43986
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 10
length of query: 58
length of database: 11,318,596
effective HSP length: 34
effective length of query: 24
effective length of database: 10,410,150
effective search space: 249843600
effective search space used: 249843600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC128660.9