BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127169.2 - phase: 0
(270 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12400 putative protein 30 1.4
At5g58070 outer membrane lipoprotein - like 30 1.8
At2g35660 CTF2A 28 4.0
At1g63100 transcription factor SCARECROW, putative 28 5.2
At3g16940 calmodulin-binding protein, putative 28 6.8
At5g15540 putative protein 27 8.8
At1g03080 unknown protein 27 8.8
>At5g12400 putative protein
Length = 1595
Score = 30.0 bits (66), Expect = 1.4
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 1/74 (1%)
Query: 181 KTRHDRTRNDTIRKRVEVAPIVEKLVENRLRWFGHVERRPVDAVVRRVYQMEDSQVKRGR 240
KT+ IR + + K + R HV R ++ V + + KRGR
Sbjct: 1411 KTKTSMAERIAIRLKNHKKVVASKPLRRSGRQLKHVIRLQDESKVPEGSKKRKLETKRGR 1470
Query: 241 GRPRKTIRE-TIRK 253
GRP+K +E +IRK
Sbjct: 1471 GRPKKVKQEISIRK 1484
>At5g58070 outer membrane lipoprotein - like
Length = 186
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 136 KLKGKFYRPAFRPALMYGRECWA--VKSQHENQVSVAEMRMLRWMSSKT--RHDRTRNDT 191
KLK KFY P F P + + W + +++ + R W+ S+T + T
Sbjct: 82 KLKVKFYVPPFLPIIPVTGDYWVLYIDPDYQHALIGQPSRSYLWILSRTAQMEEETYKQL 141
Query: 192 IRKRVEVAPIVEKL 205
+ K VE + KL
Sbjct: 142 VEKAVEEGYDISKL 155
>At2g35660 CTF2A
Length = 439
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
Query: 22 CMLFADDVVLVGESREEVNGRLETWRQALEAYGF-RLSRSKTEYIECNFSG 71
C D VVL + +NG E+ A+E+YG R SR+ + N G
Sbjct: 345 CCALEDSVVLANKLANAINGGTESIEVAMESYGSERWSRAFPLTVRANLVG 395
>At1g63100 transcription factor SCARECROW, putative
Length = 658
Score = 28.1 bits (61), Expect = 5.2
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 6/71 (8%)
Query: 1 MFNCFNRNMSVTEHIQELAPRCMLFADD----VVLVGESREEVNGRLETWRQALEAYGFR 56
MF+ + N++ T+ + + MLF + V G R+E + WR+ LE GFR
Sbjct: 534 MFDAIHTNLA-TDSLMRVKVEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFR 592
Query: 57 -LSRSKTEYIE 66
L S+ E ++
Sbjct: 593 SLGVSEREVLQ 603
>At3g16940 calmodulin-binding protein, putative
Length = 852
Score = 27.7 bits (60), Expect = 6.8
Identities = 28/148 (18%), Positives = 56/148 (36%), Gaps = 14/148 (9%)
Query: 34 ESREEVNGRLETWRQALEAYGFRLSRSKTEYIECNFSGRRSRSTLEVKVEDHIIPQVTRS 93
E + + L +R A EA +R + + E RS E+ +
Sbjct: 638 EDEQSLKDALAAYRTAAEA----AARIQGAFREKALKAARSSVIQFANKEEEAKSIIAAM 693
Query: 94 KYLGSFVQNDGEIEADVSHRIQAGWLKWRRDSDVLCDKKVPLKLKGKFYRPAFRPALMYG 153
K +F + D + + ++RIQ + W+ + L ++ ++++ F + Y
Sbjct: 694 KIQNAFRKYDTRRKIEAAYRIQCRFQTWKIRREYLNMRRQAIRIQAAF--RGLQARRQYK 751
Query: 154 RECWAVKSQHENQVSVAEMRMLRWMSSK 181
+ W+ V V E +LRW +
Sbjct: 752 KILWS--------VGVLEKAVLRWRQKR 771
>At5g15540 putative protein
Length = 1755
Score = 27.3 bits (59), Expect = 8.8
Identities = 10/18 (55%), Positives = 15/18 (82%)
Query: 124 DSDVLCDKKVPLKLKGKF 141
D +VLCDK+V L ++G+F
Sbjct: 807 DPEVLCDKRVQLAVEGRF 824
>At1g03080 unknown protein
Length = 1744
Score = 27.3 bits (59), Expect = 8.8
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 5 FNRNMSVTE---HIQELAPRCMLFADDVVLVGESREEVNGRLETWRQALEAYGFRLSRSK 61
FN N+ + E ++ L C L DD + RE + ++T R+ +E + K
Sbjct: 744 FNANVELEELKSKLKSLEESCHLLNDDKTTLTSERESLLSHIDTMRKRIEDLEKEHAELK 803
Query: 62 TEYIECNFSGRRSRSTLEVKVEDHIIPQVTRSKYLGSFVQ 101
+ +E S+L+ K+E+ + + SFVQ
Sbjct: 804 VKVLEL---ATERESSLQ-KIEELGVSLNAKDCEYASFVQ 839
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,934,950
Number of Sequences: 26719
Number of extensions: 242383
Number of successful extensions: 647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 9
length of query: 270
length of database: 11,318,596
effective HSP length: 98
effective length of query: 172
effective length of database: 8,700,134
effective search space: 1496423048
effective search space used: 1496423048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC127169.2