BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127020.7 + phase: 0 /pseudo
(1459 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29650 reverse transcriptase, putative 81 5e-15
At3g24680 zinc-finger protein, putative 80 7e-15
At2g25550 putative non-LTR retroelement reverse transcriptase 80 7e-15
At2g01840 putative non-LTR retroelement reverse transcriptase 78 3e-14
At2g15520 putative Ta11-like non-LTR retroelement protein 77 7e-14
At2g17920 putative Ta11-like non-LTR retroelement protein 77 1e-13
At3g31430 hypothetical protein 74 6e-13
At2g41590 putative Ta11-like non-LTR retroelement protein 73 1e-12
At2g15380 putative non-LTR retroelement reverse transcriptase 72 3e-12
At2g05290 putative Ta11-like non-LTR retroelement protein 71 5e-12
At4g10830 putative protein 70 9e-12
At4g04660 69 2e-11
At4g09700 putative protein 69 2e-11
At4g01490 putative transposon protein 69 2e-11
At2g16690 putative Ta11-like non-LTR retroelement protein 69 3e-11
At2g13450 T10F5.3 68 3e-11
At5g25200 putative protein 68 4e-11
At3g47920 putative protein 67 1e-10
At2g07670 putative non-LTR retrolelement reverse transcriptase 66 1e-10
At4g02000 putative zinc finger protein 65 4e-10
>At1g29650 reverse transcriptase, putative
Length = 1557
Score = 80.9 bits (198), Expect = 5e-15
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 39 CLIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPW 98
CLIG VL + M R W+ +V +R+ F F K D VL +G
Sbjct: 38 CLIGRVLNPSCQPMKHLIRNMPRKWQKEGKVKGVALSDERFQFIFDSKHDLEDVLAKGVH 97
Query: 99 LYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDV 158
++ + I++DR + L + WVQ+ +P + K +G +G +K
Sbjct: 98 SFNEWSIIVDRWYEHPPDDY--LRFMPLWVQIWNIPVNYYTEKAITKLGDLIGEVKEVVF 155
Query: 159 RNTIHSS--YMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTD 216
+H + ++R+KV DV+ PL++ + +G TV F YE++ C+ C L H
Sbjct: 156 NPDLHQAQKFVRVKVLFDVSRPLRRSKVINFKHGESATVKFHYERIQKRCYECQRLTHEK 215
Query: 217 KVCPELFELDSD 228
+CP L + D
Sbjct: 216 DMCPLLIKARQD 227
>At3g24680 zinc-finger protein, putative
Length = 487
Score = 80.5 bits (197), Expect = 7e-15
Identities = 55/192 (28%), Positives = 89/192 (45%), Gaps = 6/192 (3%)
Query: 40 LIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWL 99
LIG VL + + R W+ RVT ++R+ F F K D VL +G
Sbjct: 39 LIGRVLNPSCQPMKHLIRNIPRKWQKEGRVTGISLTSERFQFIFDSKHDLEDVLAKGVHT 98
Query: 100 YDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAY--- 156
Y+++ IV+DR + + L + WVQ+ +P + K +G +G +K
Sbjct: 99 YNDWSIVVDRWYENPPDDY--LRFMLVWVQIWNIPVNYYTEKAITKLGDLIGEVKEVVFN 156
Query: 157 DVRNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTD 216
V +H ++R+ V DV+ PL++ + NG+ TV F YE++ C+ C L H
Sbjct: 157 PVEPQLHE-FVRVNVLFDVSRPLRRSKVINFKNGDTATVRFHYERIQKRCYECQRLTHEK 215
Query: 217 KVCPELFELDSD 228
+CP L + D
Sbjct: 216 DLCPILIKERQD 227
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 80.5 bits (197), Expect = 7e-15
Identities = 57/220 (25%), Positives = 108/220 (48%), Gaps = 9/220 (4%)
Query: 15 LTLSDEGLTLNLEAEPETAADLDHCLIGGVLADREIQFAYFSERMSRAWKPGKRVTITKS 74
L + DE + L E + A L+ + R+ +M R W G +
Sbjct: 14 LGIDDEPVALTSEFCSQAAYVNRFSLVVTTVNPRKQNLRALIGQMPRVW--GFPDSCVGR 71
Query: 75 VADRYLFQFHHKVDDAR--VLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHG 132
+ D+ QF + ++A VL GPW ++++ + + R P+ + + I FWVQ+ G
Sbjct: 72 IIDKGRVQFKFQSEEAMNLVLRRGPWSFNDWMLSIHRWYPNL--SEAEMKIIPFWVQITG 129
Query: 133 LPFGFVQPKVGQGIGSFLGTLKAYDV-RNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGN 191
+P F+ + + +G+ LG + D N+ H+ ++R+++ ++ PL+ + + ++G
Sbjct: 130 IPLLFLTNAMARCVGNRLGHVADVDFDENSNHTGFVRVRINWNLDDPLRFQRNFQFADGE 189
Query: 192 FVTVNFKYEKLGVFCHRCGVLGHTDKVCPELFELDSDDGV 231
+ F++E+L FC +CG L H KVC F D++D V
Sbjct: 190 NTVIKFRFERLRNFCTKCGSLKHDIKVCTLSF--DNEDPV 227
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 78.2 bits (191), Expect = 3e-14
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 12/199 (6%)
Query: 39 CLIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDA--RVLEEG 96
CL+G L R + R W G + + FQF +++ VL G
Sbjct: 38 CLLGRPLMPRNQNLRQILTTVPRTW--GLVGFVRGRIIQNRRFQFIFPSEESLDTVLRRG 95
Query: 97 PWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKA- 155
PW + + +V++R P P + LN I FW+QV +P F+ +V I LG KA
Sbjct: 96 PWSFADRMLVVERWTPDMDP--LVLNFIPFWIQVREIPLQFLNLEVIDNIAGSLGERKAV 153
Query: 156 -YDVRNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGH 214
+D T ++RI++ DV PL+ + + S G ++F YE+L FC CG + H
Sbjct: 154 DFDPFTTTRVEFVRIQIKWDVNHPLRFQRNYQFSLGVNTVLSFYYERLRGFCDVCGRMTH 213
Query: 215 TDKVC----PELFELDSDD 229
C L + D DD
Sbjct: 214 DAGSCVLQNGALHDSDGDD 232
>At2g15520 putative Ta11-like non-LTR retroelement protein
Length = 483
Score = 77.0 bits (188), Expect = 7e-14
Identities = 54/191 (28%), Positives = 86/191 (44%), Gaps = 4/191 (2%)
Query: 40 LIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWL 99
LIG VL M R W+ +V +R+ F F + D VL +G
Sbjct: 35 LIGRVLNPACQPMKNLLRNMPRKWQKEGKVKGIALNNERFQFIFDSEHDLEEVLAKGVHT 94
Query: 100 YDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVR 159
++++ IV+DR + + L ++ WVQ+ +P + K +G +G +K
Sbjct: 95 FNDWSIVVDRWYENPPDDY--LRYMLLWVQIWNIPVNYNTAKAITKLGDLIGEVKEVVFN 152
Query: 160 NTIHS--SYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDK 217
+ ++R+KV DV+ PL++ V NG TVNF YE++ C+ C L H
Sbjct: 153 PELKQIREFVRVKVLFDVSRPLRRSKVVNFRNGGSATVNFHYERIQKRCYECQRLTHEKD 212
Query: 218 VCPELFELDSD 228
VCP L + D
Sbjct: 213 VCPILVKARQD 223
>At2g17920 putative Ta11-like non-LTR retroelement protein
Length = 336
Score = 76.6 bits (187), Expect = 1e-13
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 59 MSRAWKPGKRVTITKSVADRYL-FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPN 117
+ RAW V + + D Y+ F F ++D V PWL++N+ + R P+ N
Sbjct: 58 LPRAWGLTAHVH-GRIIDDTYVQFLFQSEMDLLSVQRREPWLFNNWFVASQRWQPAPALN 116
Query: 118 LVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDV 175
V I+ WVQ+ G+PF +V + I +G + + D +T + +Y+R++V + +
Sbjct: 117 FVTT--IDLWVQMRGIPFLYVSEETALEIAQEIGAIISLDFHDTTSTQIAYIRVRVRVGI 174
Query: 176 TVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCP 220
T L+ R+ +G + F+YE+L C C H CP
Sbjct: 175 TDSLRFFQRITFESGESALIRFQYERLRRICSNCFRFTHNRNYCP 219
>At3g31430 hypothetical protein
Length = 336
Score = 73.9 bits (180), Expect = 6e-13
Identities = 49/166 (29%), Positives = 82/166 (48%), Gaps = 12/166 (7%)
Query: 59 MSRAWKPGKRVTITKSVADRYLFQFHHKVDDA--RVLEEGPWLYDNFHIVLDRIAPSAVP 116
M R W G+ + + + F F ++++ VL GPW ++++ I+L R P
Sbjct: 153 MPRIW--GQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPWAFNDWMILLQRWEPQ--- 207
Query: 117 NLVPL-NHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTL--KAYDVRNTIHSSYMRIKVAI 173
+PL I FWVQ+ G+PF F+ V + IG LG + ++V + R+ +
Sbjct: 208 --IPLFPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHW 265
Query: 174 DVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVC 219
D+T PL+ + + + G + F+YE+L FC CG+L H C
Sbjct: 266 DITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFGAC 311
>At2g41590 putative Ta11-like non-LTR retroelement protein
Length = 367
Score = 73.2 bits (178), Expect = 1e-12
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 81 FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQP 140
F F +++D V + PWL++N+ + R + N V I+ WVQ+ G+P +V
Sbjct: 80 FLFQNEIDLMMVQRKEPWLFNNWFVAATRWEVAPAHNFVTT--IDLWVQIRGIPLPYVSE 137
Query: 141 KVGQGIGSFLGTLKAYDVRNT--IHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFK 198
+ I LG + D +T I +Y+R++V +T L+ R+ +G T+ F+
Sbjct: 138 ETVMEIAQDLGEVLMLDYHDTTSIQIAYIRVRVRFGITDRLRFFQRIVFDSGETATIRFQ 197
Query: 199 YEKLGVFCHRCGVLGHTDKVCP 220
YE+L C C H CP
Sbjct: 198 YERLRRICSSCFRFTHNRAYCP 219
>At2g15380 putative non-LTR retroelement reverse transcriptase
Length = 1311
Score = 71.6 bits (174), Expect = 3e-12
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
Query: 59 MSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNL 118
+S W + T + + +F D +VL+ P+ +D + ++L + P P+
Sbjct: 63 LSNRWTLRGKATGSDLGQGVFQLKFDFSEDLQQVLDNRPYHFDQWMVILQKWEPVISPSF 122
Query: 119 VPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHSSYMRIKVAIDVTVP 178
L I FW+++ GLP + +P++ + IG LGT+ + I SS ++IKV +D P
Sbjct: 123 PCL--IPFWIELQGLPKHYWKPEMLKSIGEELGTV----MDQEITSSTVKIKVLLDGLQP 176
Query: 179 LKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCP 220
+ KE V +G V Y+ L C C L H +K CP
Sbjct: 177 ITKETIVDFPDGREAVVYLDYKNLKNHCRHCHRLTHEEKHCP 218
>At2g05290 putative Ta11-like non-LTR retroelement protein
Length = 383
Score = 70.9 bits (172), Expect = 5e-12
Identities = 43/166 (25%), Positives = 74/166 (43%), Gaps = 4/166 (2%)
Query: 59 MSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNL 118
M R W+ RV DR+ F F ++ D VL+ G W D++ +V++R PN
Sbjct: 59 MPRIWRLYDRVRGIALSRDRFQFIFKYEEDLQEVLKTGVWTQDDWGVVMERWVEDLPPNY 118
Query: 119 VPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAY--DVRNTIHSSYMRIKVAIDVT 176
L + W+++ +P + I +G + + D Y+RI++ DV+
Sbjct: 119 --LMFLLIWLRLRNIPVNHYTQATIKSIAKCVGQVIEFPFDENEAQSKDYVRIRILFDVS 176
Query: 177 VPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCPEL 222
L+ ++ NG+ V + YE++ C +C L H CP L
Sbjct: 177 KGLRNSKEIQLPNGSMVKIGIDYERIRKRCFQCQRLTHEKPRCPYL 222
>At4g10830 putative protein
Length = 1294
Score = 70.1 bits (170), Expect = 9e-12
Identities = 58/252 (23%), Positives = 109/252 (43%), Gaps = 36/252 (14%)
Query: 78 RYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGF 137
R F+F ++ VL+ GPW ++++ + + R P+ + + I FWVQ+ G+P +
Sbjct: 77 RVQFKFRNEESMNLVLQRGPWSFNDWMLSVHRWFPNITEGEMKI--IPFWVQIQGIPILY 134
Query: 138 VQPKVGQGIGSFLGTLKAYDV-RNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVN 196
+ + + +GS LG + D N ++R+K+A + L+ + + +
Sbjct: 135 LTNAMARVVGSRLGYVTDVDFDENANQMGFVRVKLAWNFDDHLRFQRNFQFQENENTIIK 194
Query: 197 FKYEKLGVFCHRCGVLGHTDKVCPELFEL--------DSDDGVRNWGPYLKPVTQRVGTA 248
F++E+L FC +CG L H K C FE D+DD G
Sbjct: 195 FRFERLRNFCTKCGSLKHDVKECNLSFEEYVPVNVNDDNDDD-----------NHDQGHD 243
Query: 249 ATNRWLQDPIPAVTPS--------HNSDVAAASVGRKTQTAGTGVVTNFHDRMTAFQTQL 300
+ +D +P++ P+ HN+ + + + + + + F D T+L
Sbjct: 244 EDDMAAEDSLPSIDPASLIPGLQGHNAGATSVKQEGSSSSVPSDLASAFED------TEL 297
Query: 301 TAMRHDVLAAQN 312
TA R L A++
Sbjct: 298 TAERLRYLHAKH 309
>At4g04660
Length = 380
Score = 69.3 bits (168), Expect = 2e-11
Identities = 46/166 (27%), Positives = 80/166 (47%), Gaps = 8/166 (4%)
Query: 59 MSRAWKPGKRV--TITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVP 116
+ R W RV + + ++LFQF +VD VL PWLY+++ + R +
Sbjct: 58 LPRVWDLTSRVHGRVINATFVQFLFQF--EVDLLSVLRREPWLYNSWFVTAHRWEVNMAF 115
Query: 117 NLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRN--TIHSSYMRIKVAID 174
L++I+ WVQ+ G+P +V + I LG + + D + T +Y+R+++ D
Sbjct: 116 EY--LSNIDLWVQMFGIPLLYVCEENVVEIAHGLGEIISLDFHDATTTQIAYIRVRIRFD 173
Query: 175 VTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCP 220
+T ++ R+ +G + F+YE+L C C L H CP
Sbjct: 174 ITDCIRFFQRITFDSGETALIRFQYERLRRICSSCFRLTHHRNFCP 219
>At4g09700 putative protein
Length = 371
Score = 68.9 bits (167), Expect = 2e-11
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 57 ERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAP---S 113
E M + W RV + +R+ F+F + D VL++ P+ + + +L R P
Sbjct: 61 EYMVQYWNLENRVIGRELGPERFFFRFETEADLQLVLKKAPYHFKKWMFILQRWEPIVSE 120
Query: 114 AVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHSSYMRIKVAI 173
A P +P FW++V+ +P IG LG + D+ + RI+V I
Sbjct: 121 AFPAFIP-----FWIKVNDIPMHHCTELTLNTIGQALGPVIDKDLSDG------RIRVNI 169
Query: 174 DVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCP 220
+ PL+ + +R G TV +YEKL C C L H +K CP
Sbjct: 170 NGLEPLEMKIPIRLPTGEVTTVFLEYEKLEKHCFSCFSLSHEEKACP 216
>At4g01490 putative transposon protein
Length = 577
Score = 68.9 bits (167), Expect = 2e-11
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 59 MSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNL 118
+S W + T + + F+F ++ D +VL+ P+ + + ++L R P P+
Sbjct: 59 LSNRWNLKGKATGSDLGRGCFQFRFEYEEDLQKVLDNRPYHFGQWMVILQRWKPVISPSF 118
Query: 119 VPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHSSYMRIKVAIDVTVP 178
+ I FW+++ GLP + ++ IG G + V + I + +IKV I+ P
Sbjct: 119 P--SEIPFWIELQGLPMHYWIKEMLYAIGKEAGEV----VDHEISPAAAKIKVLINGLQP 172
Query: 179 LKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCPELFELDS 227
+ KE V +G+ V +Y+ L CH C L H + CP L ++++
Sbjct: 173 ITKETVVEFPDGSEALVYLEYKNLKSHCHHCQRLSHAEADCPGLKKVEA 221
>At2g16690 putative Ta11-like non-LTR retroelement protein
Length = 240
Score = 68.6 bits (166), Expect = 3e-11
Identities = 49/210 (23%), Positives = 96/210 (45%), Gaps = 7/210 (3%)
Query: 15 LTLSDEGLTLNLEAEPETAA-DLDHC-LIGGVLADREIQFAYFSERMSRAWKPGKRVTIT 72
+T++D+ L L +P+ ++ + + C LIG L + + + M R W+ RV
Sbjct: 12 MTINDDS-PLILSNQPQLSSIERNSCSLIGRFLNPSHQRMSNWILDMPRIWRIYSRVRGV 70
Query: 73 KSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHG 132
+R+ F + D +L+ G W D + +++DR + + + W+++
Sbjct: 71 ALSQERFQFFYKSNDDLLEILKTGVWTQDEWCVIMDRWVEKPPEEYLMI--LPIWIRLRN 128
Query: 133 LPFGFVQPKVGQGIGSFLGTLKAY--DVRNTIHSSYMRIKVAIDVTVPLKKEWRVRASNG 190
+P + + + I +G + D+ + Y+R++V +DV PL+ V+ +G
Sbjct: 129 IPVNYYTEETIKKIAGCVGQVVKVELDLEKSQAQDYVRVQVNLDVRNPLRNSKSVQVPSG 188
Query: 191 NFVTVNFKYEKLGVFCHRCGVLGHTDKVCP 220
V+V F YE++ C C L H CP
Sbjct: 189 EVVSVTFDYERIRKRCFFCQRLTHDKADCP 218
>At2g13450 T10F5.3
Length = 394
Score = 68.2 bits (165), Expect = 3e-11
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 6/164 (3%)
Query: 59 MSRAWKPGKRVTITKSVADRYL-FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPN 117
+ RAW RV + + D ++ F F ++D VL PWLY+N+ + R + +
Sbjct: 58 LPRAWGLTNRVH-GRVLNDTFVQFIFQSEIDLLSVLRREPWLYNNWFVTAQRWEVNLTFH 116
Query: 118 LVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRN--TIHSSYMRIKVAIDV 175
L L IE WVQ+ G+P +V + I LG + D + T +Y+R+++ +
Sbjct: 117 L--LTSIELWVQMRGIPLLYVCEETALEIAHELGEIITLDFHDSTTTQIAYIRVRIRFGI 174
Query: 176 TVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVC 219
T L+ R+ +G ++F+YE+L C C + H C
Sbjct: 175 TDRLRFFLRIIFDSGETALISFQYERLRRICSSCFRMTHHRNSC 218
>At5g25200 putative protein
Length = 367
Score = 67.8 bits (164), Expect = 4e-11
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 81 FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQP 140
F F +++D V PWL++N+ + R + NLV I+ WVQ+ G+P +V
Sbjct: 80 FLFANEIDLMMVQRREPWLFNNWFVAATRWQVAPAHNLVTT--IDLWVQIRGIPLPYVSE 137
Query: 141 KVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFK 198
+ I LG + + D +++R++V +T L+ R+ +G T+ F+
Sbjct: 138 ETVLEIAQDLGEIISLDFHEATSPQIAFIRVRVRFGITDRLRFFQRIIFDSGETATIRFQ 197
Query: 199 YEKLGVFCHRCGVLGHTDKVCP 220
YE+L C C H CP
Sbjct: 198 YERLRRLCSSCFRFTHNRAYCP 219
>At3g47920 putative protein
Length = 300
Score = 66.6 bits (161), Expect = 1e-10
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 81 FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQP 140
F F ++VD V WL++N+ + R P+ V N V I+ WVQ+ G+P +V
Sbjct: 9 FLFQNEVDLLSVQRRELWLFNNWFVANHRWEPAPVLNFVTT--IDLWVQMRGIPLLYVCE 66
Query: 141 KVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFK 198
+ I +G + D + + +Y+R++V I +T L+ R+ +G + F+
Sbjct: 67 ETALEIAHEIGEIITLDFHDATMTQIAYIRVRVRIGITDRLRFFQRITFDSGETALIRFQ 126
Query: 199 YEKLGVFCHRCGVLGHTDKVCP 220
YE+L C C + H CP
Sbjct: 127 YERLRRICSSCFRVTHHRNYCP 148
>At2g07670 putative non-LTR retrolelement reverse transcriptase
Length = 913
Score = 66.2 bits (160), Expect = 1e-10
Identities = 46/186 (24%), Positives = 79/186 (41%), Gaps = 10/186 (5%)
Query: 39 CLIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPW 98
C++ VL R I A + R+ WKP + + ++ +F + + L GPW
Sbjct: 55 CMVVKVLG-RNISIANLNRRLREMWKPQGAMFVVDLPCQFFMIRFEREDEYLSALTGGPW 113
Query: 99 LYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDV 158
++++ +P P + WV++ +P + GI LG D+
Sbjct: 114 RAFGSYLLVQAWSPEFDPLRDEITTTPIWVRLMNIPLSLYHTSILMGIAGSLGKPVKVDM 173
Query: 159 RNTIH---SSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHT 215
T+H + + R+ + +D+ PLK + NG V+ YE L C RCG+ GH
Sbjct: 174 -TTLHVERARFARMCIEVDLAKPLKGTLLL---NGERYFVS--YEGLANICSRCGMYGHL 227
Query: 216 DKVCPE 221
CP+
Sbjct: 228 IHTCPQ 233
>At4g02000 putative zinc finger protein
Length = 314
Score = 64.7 bits (156), Expect = 4e-10
Identities = 39/136 (28%), Positives = 64/136 (46%), Gaps = 4/136 (2%)
Query: 87 VDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGI 146
+D VL PWLY+N+ + R + +L L IE WVQ+ G+P +V + I
Sbjct: 6 IDLLSVLRREPWLYNNWFVTTHRWEVNLTFHL--LTSIELWVQMRGIPLLYVCEETALEI 63
Query: 147 GSFLGTLKAYDVRN--TIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGV 204
LG + D + T +Y+R+++ +T L+ R+ G ++F+YE+L
Sbjct: 64 AHELGKILTLDFHDSTTTQIAYIRVRIRFGITDRLRFFQRIIFDFGEAALISFQYERLRR 123
Query: 205 FCHRCGVLGHTDKVCP 220
C C + H CP
Sbjct: 124 ICSSCFRMTHHRNSCP 139
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.351 0.158 0.526
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,284,900
Number of Sequences: 26719
Number of extensions: 1052418
Number of successful extensions: 4099
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4011
Number of HSP's gapped (non-prelim): 59
length of query: 1459
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1347
effective length of database: 8,326,068
effective search space: 11215213596
effective search space used: 11215213596
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC127020.7