BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126786.10 - phase: 0 /pseudo
(1308 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35820 copia-like retrotransposable element 144 3e-34
At2g21310 putative retroelement pol polyprotein 144 3e-34
At3g45520 copia-like polyprotein 140 6e-33
At2g21460 putative retroelement pol polyprotein 136 7e-32
At2g07550 putative retroelement pol polyprotein 136 7e-32
At4g10460 putative retrotransposon 134 3e-31
At2g19840 copia-like retroelement pol polyprotein 119 1e-26
At2g13930 putative retroelement pol polyprotein 101 3e-21
At1g37110 101 3e-21
At4g21360 putative transposable element 97 5e-20
At1g47360 polyprotein, putative 90 7e-18
At2g15700 copia-like retroelement pol polyprotein 89 2e-17
At4g04380 putative polyprotein 82 2e-15
At3g55300 putative protein 81 5e-15
At4g04280 putative transposon protein 65 3e-10
At4g04600 putative polyprotein 63 1e-09
At4g16870 retrotransposon like protein 57 7e-08
At1g44510 polyprotein, putative 56 2e-07
At1g42380 hypothetical protein 55 3e-07
At3g29782 hypothetical protein 55 3e-07
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 144 bits (363), Expect = 3e-34
Identities = 97/254 (38%), Positives = 143/254 (56%), Gaps = 28/254 (11%)
Query: 7 DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKT------------- 53
++EKF G D+ LWK K+ A + +E L E + + E +
Sbjct: 7 EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66
Query: 54 -------ELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQ 106
E KA S II+ LG+ VLR+V ++ TA M LD L+M KSL +R LKQ+
Sbjct: 67 LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQR 126
Query: 107 LYFYRMVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYG 166
LY Y+M E+ + E + +F K+I +L N+ V + DED+A+ LL +LPR F+ K+T+ Y
Sbjct: 127 LYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYC 186
Query: 167 KEGTITLEEVQAALRTKELTKFKELK-VDDSGEGLNV-SRGRSQNRGKGKGKNSRSKSRS 224
K T+ LEE+ +A+R+K L K + ++ +GL V RGRS+ RGKG KN +S+S+S
Sbjct: 187 KT-TLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKN-KSRSKS 244
Query: 225 KGDGNKTQYKCFIC 238
KG G C+IC
Sbjct: 245 KGAGK----TCWIC 254
>At2g21310 putative retroelement pol polyprotein
Length = 838
Score = 144 bits (363), Expect = 3e-34
Identities = 95/246 (38%), Positives = 143/246 (57%), Gaps = 19/246 (7%)
Query: 7 DIEKFTGGNDFGLWKVKMRAI---------LIQQKCVEALKGEAQMAAHLTPAEKTELND 57
++EK G D+ LWK K+ A L + + +E + A+ + LT E L +
Sbjct: 7 EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66
Query: 58 K---AVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVE 114
K A S +I+ LG+ VLR+V +E TA M LD L+M KSL +R LKQ+LY Y+M +
Sbjct: 67 KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126
Query: 115 SKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLE 174
S I E + +F K+I +L N+ V++ DED+A+ LL +LP+ F+ KDT+ YGK T+ L+
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALD 185
Query: 175 EVQAALRTKELTKFKELK-VDDSGEGLNV-SRGRSQNRGKGKGKNSRSKSRSKGDGNKTQ 232
E+ A+R+K L K + +S + L V RGRS+ R K +N +S+SRSK K
Sbjct: 186 EITGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERN-KSQSRSKSREKKV- 243
Query: 233 YKCFIC 238
C++C
Sbjct: 244 --CWVC 247
>At3g45520 copia-like polyprotein
Length = 1363
Score = 140 bits (352), Expect = 6e-33
Identities = 87/244 (35%), Positives = 143/244 (57%), Gaps = 24/244 (9%)
Query: 3 GSK*DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDK---- 58
G++ ++EKF G D+ +WK K+ A + L+ +EK++ ++K
Sbjct: 3 GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEERE 62
Query: 59 -----------AVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQL 107
A S I++ + D+VLR++ +ET+A +M LD LYM+K+L +R LKQ+L
Sbjct: 63 KMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKL 122
Query: 108 YFYRMVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGK 167
Y ++M E+ I + EF I+ +L N++V + DED+A+ LL +LP+ F+ KDT+ Y
Sbjct: 123 YSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSS 182
Query: 168 EGTI-TLEEVQAALRTKELTKFKELK--VDDSGEGLNV-----SRGRSQNRGKGKGKNSR 219
T+ +L+EV AA+ ++EL +F +K + EGL V +RGRS+ + KGKGK S+
Sbjct: 183 GKTVLSLDEVAAAIYSREL-EFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSK 241
Query: 220 SKSR 223
SKS+
Sbjct: 242 SKSK 245
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 136 bits (343), Expect = 7e-32
Identities = 94/255 (36%), Positives = 141/255 (54%), Gaps = 30/255 (11%)
Query: 7 DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDK-------- 58
++EKF G D+ +WK K+ A L ALK E + + + TE +K
Sbjct: 7 EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66
Query: 59 -------AVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYR 111
A SAI++ + D+VLR++ +E +A +M LD LYM+K+L +R KQ+LY ++
Sbjct: 67 LEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFK 126
Query: 112 MVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYG-KEGT 170
M E+ I + EF +II +L N +V + DED+A+ LL +LP+ F+ +DT+ YG T
Sbjct: 127 MSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVT 186
Query: 171 ITLEEVQAALRTKELTKFKELK-VDDSGEGLNV-----SRGRSQNRG-KGKGKNSRSKSR 223
++L+EV AA+ +KEL K + EGL V +RGR++ RG K SRSKSR
Sbjct: 187 LSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSKSR 246
Query: 224 SKGDGNKTQYKCFIC 238
SK C+IC
Sbjct: 247 SKKG-------CWIC 254
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 136 bits (343), Expect = 7e-32
Identities = 84/239 (35%), Positives = 141/239 (58%), Gaps = 22/239 (9%)
Query: 7 DIEKFTGGNDFGLWKVKMRA---ILIQQKCVEALKGEAQMAAHLTPAEKT---------- 53
++EKF G D+ +WK K+ A IL ++ + + + L +++
Sbjct: 7 EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66
Query: 54 --ELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYR 111
E KA SAI++ + D+VLR++ +E+TA +M LD LYM+K+L +R KQ+LY ++
Sbjct: 67 LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFK 126
Query: 112 MVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGK-EGT 170
M E+ + + EF +II +L N++V + DED+A+ LL ALP++F+ KDT+ Y +
Sbjct: 127 MSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSI 186
Query: 171 ITLEEVQAALRTKEL---TKFKELKVDDSG---EGLNVSRGRSQNRGKGKGKNSRSKSR 223
+TL+EV AA+ +KEL + K +KV G + N ++G+ + +GKGKGK +SK +
Sbjct: 187 LTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKGKSKKK 245
>At4g10460 putative retrotransposon
Length = 1230
Score = 134 bits (338), Expect = 3e-31
Identities = 91/250 (36%), Positives = 135/250 (53%), Gaps = 23/250 (9%)
Query: 7 DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEK-------------T 53
++EKF G D+ LWK K+ A + AL+ ++ L E+
Sbjct: 7 EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66
Query: 54 ELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMV 113
E KA S I++ + D+VLR+ +E TA SM LD LYM+K+L +R LKQ+LY Y+M
Sbjct: 67 EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQ 126
Query: 114 ESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGK-EGTIT 172
E+ + + EF ++I +L N +V + DED+A+ LL +LP+ F+ KDT+ YG T++
Sbjct: 127 ENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLS 186
Query: 173 LEEVQAALRTKELTKFKELK-VDDSGEGLNVS---RGRSQNRGKGKGKNSRSKSRSKGDG 228
++EV AA+ +KEL K + EGL V R + K KG RS+SRSKG
Sbjct: 187 VDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKGNKGRSRSRSKG-- 244
Query: 229 NKTQYKCFIC 238
C+IC
Sbjct: 245 ---WKGCWIC 251
>At2g19840 copia-like retroelement pol polyprotein
Length = 1137
Score = 119 bits (297), Expect = 1e-26
Identities = 72/176 (40%), Positives = 110/176 (61%), Gaps = 13/176 (7%)
Query: 52 KTELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYR 111
+ + ++KA+ I + +GDKVLR + TA W LD LY+ KSL +R L+ ++Y YR
Sbjct: 37 RIDQDEKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLKVYNYR 96
Query: 112 MVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTI 171
M +SK + E + EF K+I +L N+ + + DE +A+ +L ALP S++ K+T+ YG+EG I
Sbjct: 97 MQDSKTLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREG-I 155
Query: 172 TLEEVQAALRTKELTKFKELKVDDS------GEGLNVSRGRSQNRGKGKGKNSRSK 221
L++V +A ++KEL EL+ D S GEGL V RG+SQ RG K++ K
Sbjct: 156 KLDDVISAAKSKEL----ELR-DSSGGSRPVGEGLYV-RGKSQARGSDGPKSTEGK 205
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 101 bits (251), Expect = 3e-21
Identities = 64/191 (33%), Positives = 106/191 (54%), Gaps = 12/191 (6%)
Query: 52 KTELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYR 111
+ E DKA + I + + DKVLR++ TA W LD L+M +SL HR + Y ++
Sbjct: 42 RLERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVYTQLSFYTFK 101
Query: 112 MVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLY-GKEGT 170
M E+K I E + +F KI+ +L ++ +++ DE +A+ LL +LP ++ +TM Y
Sbjct: 102 MQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNSREK 161
Query: 171 ITLEEVQAALRTKELTKFKELKVDDSG--EGLNVSRGRSQNRGKGKGKNSRSKSRSK-GD 227
+ L++V A R KE +EL ++ EG + +RGR + +G +++SRSK D
Sbjct: 162 LRLDDVMVAARDKE----RELSQNNRPVVEG-HFARGRPDGKNNNQGNKGKNRSRSKSAD 216
Query: 228 GNKTQYKCFIC 238
G + C+IC
Sbjct: 217 GKRV---CWIC 224
>At1g37110
Length = 1356
Score = 101 bits (251), Expect = 3e-21
Identities = 70/255 (27%), Positives = 128/255 (49%), Gaps = 27/255 (10%)
Query: 7 DIEKFTGGNDFGLWKVKMRAIL------------IQQKCVEALKGEAQMAA--------- 45
+I+ F G DF LWK++++A L K V K EA+ +
Sbjct: 9 EIKVFNGDRDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESGDGESSGTK 68
Query: 46 HLTPAEKTELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQ 105
+ K E +++A + II + D VL +V+ T +W L+ YM SL +R +
Sbjct: 69 EVPDPVKIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYTQL 128
Query: 106 QLYFYRMVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLY 165
+LY ++MV + I + + EF +I+ L ++++ +++E +A+ +L +LP S K T+ Y
Sbjct: 129 KLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKY 188
Query: 166 GKEGTITLEEVQAALRT--KELTKFKELKVDDSGEGLNVSRGRSQNRGKGKGKNSRSKSR 223
G + T+T+++V ++ ++ +EL + +L + RGR R KG + +SR
Sbjct: 189 GNK-TLTVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSR 247
Query: 224 SKGDGNKTQYKCFIC 238
S +KT+ C+ C
Sbjct: 248 S---NSKTKVPCWYC 259
>At4g21360 putative transposable element
Length = 1308
Score = 97.4 bits (241), Expect = 5e-20
Identities = 76/253 (30%), Positives = 133/253 (52%), Gaps = 32/253 (12%)
Query: 2 MGSK*DIEKFTGGNDFGLWKVKMRAILIQQKCVEAL---------------KGEAQMAAH 46
M +K +I+ F G DF LWK+++ A L AL K E++
Sbjct: 3 MSTKVEIKTFNGDRDFSLWKIRIEAQLGVLGLKPALSDFTLTKTILVVKSEKKESESEDD 62
Query: 47 LTPAEKTE---------LNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSL 97
T ++KTE +D+A + II + D VL +V TA +W L+ L+M SL
Sbjct: 63 ETDSKKTEEVPDPIKFEQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNKLFMETSL 122
Query: 98 AHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFE 157
+R + +LY ++MV++ I + EF +I+ L ++ + + +E +A+ +L +LP S+
Sbjct: 123 PNRIYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSYI 182
Query: 158 NFKDTMLYGKEGTITLEEVQAALRT--KELTKFKE-LKVDDSGEGLNVSRGRSQNR---G 211
K T+ YG + T+++++V ++ ++ +EL++ KE ++ S RGR Q + G
Sbjct: 183 QLKHTLKYGNK-TLSVQDVVSSAKSLERELSEQKETIRAPASTALYTAERGRPQTKNTQG 241
Query: 212 KGKGK-NSRSKSR 223
+GKG+ S SKSR
Sbjct: 242 QGKGRGRSNSKSR 254
>At1g47360 polyprotein, putative
Length = 1182
Score = 90.1 bits (222), Expect = 7e-18
Identities = 69/235 (29%), Positives = 113/235 (47%), Gaps = 30/235 (12%)
Query: 8 IEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVSAIIMCL 67
I F DF LWK ++ A L V LK + + +TP E D
Sbjct: 6 IAVFDESGDFSLWKTRIMAHL----SVIGLK-DVVIGKTITPLTAEEEEDPE-------- 52
Query: 68 GDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNK 127
+++ TA W LD L+M +SL HR + Y ++M E+K I E + +F K
Sbjct: 53 -----KKIELCQTAQEAWETLDRLFMIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLK 107
Query: 128 IIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLY-GKEGTITLEEVQAALRTKELT 186
I+ +L ++ + + DE +A+ LL +LP ++ +TM Y + L++V R KE
Sbjct: 108 IVADLNHLQIEVTDEVQAILLLSSLPARYDGLVETMKYSNSREKLRLDDVMVGARDKE-- 165
Query: 187 KFKELKVDDS--GEGLNVSRGRSQNRGKGKGKNSRSKSRSK-GDGNKTQYKCFIC 238
+EL ++ EG + +RGR + + +G +++SRSK DG + C+IC
Sbjct: 166 --RELSQNNRPVAEG-HYARGRPEGKNNNQGNKGKNRSRSKSADGKRV---CWIC 214
>At2g15700 copia-like retroelement pol polyprotein
Length = 1166
Score = 89.0 bits (219), Expect = 2e-17
Identities = 75/267 (28%), Positives = 131/267 (48%), Gaps = 39/267 (14%)
Query: 7 DIEKFTGGNDFGLWKVKMRA---------ILIQQKCVE---ALKGEAQMAA---HLTPAE 51
++++F G DF LWKV+M A IL ++ + ++ EA +A H+ E
Sbjct: 8 EVDRFDGTGDFSLWKVRMLAHYGVLGLKGILNDEQLLRDPPVIEEEAAVAGRDYHVGDFE 67
Query: 52 --------KTELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCL 103
K E ++KA I++ +G++VLR++ TA +MW+ L LYM SL +R L
Sbjct: 68 LPSNVDLIKFEKSEKAKDLIVLNVGNQVLRKIKNCETAAAMWSTLKRLYMETSLPNRIYL 127
Query: 104 KQQLYFYRMVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTM 163
+ + Y Y+M +S+ I + +F K++ +L NI V++ +E +A+ LL +L EN +
Sbjct: 128 QLKFYTYKMTDSRSIDGNVDDFLKLVTDLNNIGVDVTEEVQAILLLSSLYDRKENSQKVE 187
Query: 164 LYGKEGTITLEEVQAALRTKELTKFKELKVDDSGEGLNVSRGRS-QNRGKGKGKNSR--- 219
EG +E + + LK + + G +V R ++ QN+G+ K +R
Sbjct: 188 SSQSEGLYVEQEAD---------QRRGLKKEKANHGEDVLRAKADQNQGQSTIKTTRVVS 238
Query: 220 ---SKSRSKGDGNKTQYKCFICHNLVT 243
K +G K+ +K N+ T
Sbjct: 239 SVVKKDIGRGSVLKSLHKPSSSANIAT 265
>At4g04380 putative polyprotein
Length = 778
Score = 82.0 bits (201), Expect = 2e-15
Identities = 58/155 (37%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 54 ELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMV 113
E K S I++ + D+VL E S D LYM+K+L ++ LKQ+LY ++M
Sbjct: 51 EKKRKTRSTIVLSVSDRVL-EAS------------DRLYMSKALPNQIYLKQKLYRFKMS 97
Query: 114 ESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTI-T 172
E+ + + EF I+ +L N++V + DED+ + LL +LP+SF+ KDT+ Y T+ T
Sbjct: 98 ENLSMEGNIDEFLHIVADLENLNVLVSDEDQTILLLMSLPKSFDQLKDTLQYSSGKTVLT 157
Query: 173 LEEVQAALRTKELTKFKELKVDDSGEGLNVSRGRS 207
L+EV AA+ +KEL +F +K S +G+ VS S
Sbjct: 158 LDEVTAAIYSKEL-EFGSVK--KSIKGMFVSEALS 189
>At3g55300 putative protein
Length = 262
Score = 80.9 bits (198), Expect = 5e-15
Identities = 52/154 (33%), Positives = 81/154 (51%), Gaps = 8/154 (5%)
Query: 92 YMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCA 151
Y TK+LA+ LK + ++MVE+K I E L K++ +LA++D+N DED+AL +
Sbjct: 40 YQTKTLANMIYLKHKFTSFKMVENKSIEENLDTSLKLVADLASLDINTSDEDQALQFMAG 99
Query: 152 LPRSFENFKDTMLYGK-EGTITLEEVQAALRTKELTKFKE-----LKVDDSGEGLNVSRG 205
LP +++ DT+ YG + T+TL V ++ +KE+ + KE + DS L +G
Sbjct: 100 LPPQYDSLVDTLKYGSGKDTLTLNAVISSAYSKEI-ELKEKGLLNVSKPDSEALLGDFKG 158
Query: 206 RSQNRGKGKGKNSRSKSRSKGDGN-KTQYKCFIC 238
RS N+G + S K CFIC
Sbjct: 159 RSNNKGNKRPCTGSSSGNGKFQSRPSNNTSCFIC 192
>At4g04280 putative transposon protein
Length = 1104
Score = 65.1 bits (157), Expect = 3e-10
Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 48/258 (18%)
Query: 5 K*DIEKFTGGNDFGLWKVKMRAIL------------IQQKCVEALKGEAQMAAHLTPAE- 51
K +I+ F G DF WK+++ A L K V K E + + + A
Sbjct: 2 KVEIKTFNGDRDFSFWKIRIEAQLGVLGLKNSLTDFKLTKTVPVAKKEEKESEYEDDASD 61
Query: 52 -----------KTELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHR 100
K E +++A + II + D VL +V TA +W L+ L+M SL +R
Sbjct: 62 IKQATEEPDPIKFEQSEQAKNFIINHITDTVLLKVQHCKTAAEIWATLNKLFMETSLLNR 121
Query: 101 QCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFK 160
+ +LY ++MV++ I + + EF +I+ + +D NL LP S+ K
Sbjct: 122 IYTQLKLYSFKMVDTLSIDQNVDEFLRILADC--LDQNL------------LPSSYIQLK 167
Query: 161 DTMLYGKEGTITLEEVQAALRTKELTKFKELKVDDSGEGLNVSRGRSQNRGKGKGKNSRS 220
T+ T + ++ R +L++ +E + S RGR Q R + K ++
Sbjct: 168 HTL-----NTDVVSSAKSLER--KLSETQESNKNVSMALYTTDRGRPQVRNQDKQGQGKN 220
Query: 221 KSRSKGDGNKTQYKCFIC 238
+ RS +KT+ C+ C
Sbjct: 221 RGRS---NSKTRVTCWFC 235
>At4g04600 putative polyprotein
Length = 922
Score = 62.8 bits (151), Expect = 1e-09
Identities = 59/218 (27%), Positives = 96/218 (43%), Gaps = 48/218 (22%)
Query: 7 DIEKFTGGNDFGLWKVKMRAIL----------------------IQQKCV----EALKGE 40
+I+ F G NDF LWK+++ A L ++K V E+
Sbjct: 8 EIKAFDGDNDFSLWKMRIMAQLGVLGLKGTLTDFALTKTEPLTKSEEKQVASGDESSDSS 67
Query: 41 AQMAAHLTPAEKTELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHR 100
A + + K E +++A++ II + D VLR+V+ TA ++W L+ LYM SL +R
Sbjct: 68 AVLTKEVPDPIKIEKSEQAINIIINHISDTVLRKVNHYKTAATLWELLNELYMETSLPNR 127
Query: 101 QCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLC-ALPRSFENF 159
+ + Y +RM+ SK ID N ++ + C A + FEN
Sbjct: 128 IYAQLKFYSFRMMTSK-----------------TIDQNFCKKEGHVKKDCFARKKKFENE 170
Query: 160 KDTMLYGKEGTITLEEVQAALRTKELTKFKELKVDDSG 197
+ G+ G IT + V + + + KE +V DSG
Sbjct: 171 EQ----GEAGVITEKLVYSEALSMYNQEAKEKRVIDSG 204
>At4g16870 retrotransposon like protein
Length = 1474
Score = 57.0 bits (136), Expect = 7e-08
Identities = 56/234 (23%), Positives = 104/234 (43%), Gaps = 19/234 (8%)
Query: 7 DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAH-LTPAEKTELN--------- 56
++ K T N++ +W +++ A+L + L G + A LT N
Sbjct: 30 NVTKLTS-NNYLMWSLQIHALLDGYELAGHLDGSIETPAPTLTTNNVVSANPQYTLWKRQ 88
Query: 57 DKAV-SAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVES 115
D+ + SA+I + V VSR T A +W L + Y S H + L+ Q+ + +
Sbjct: 89 DRLIFSALIGAISPPVQPLVSRATKASQIWKTLTNTYAKSSYDHIKQLRTQIKQLKK-GT 147
Query: 116 KPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEE 175
K I E + ++D LA + +E E++ +L LP ++ D + GK+ T ++ E
Sbjct: 148 KTIDEYVLSHTTLLDQLAILGKPMEHEEQVERILEGLPEDYKTVVD-QIEGKDNTPSITE 206
Query: 176 VQAALRTKELTKFKELKVDDSG--EGLNVSRGRSQNRGKGKGKNSRSKSRSKGD 227
+ L E + S NV++ R N + N+++K+R++G+
Sbjct: 207 IHERLINHEAKLLSTAALSSSSLPMSANVAQQRHHNNNR---NNNQNKNRTQGN 257
>At1g44510 polyprotein, putative
Length = 1459
Score = 55.8 bits (133), Expect = 2e-07
Identities = 59/249 (23%), Positives = 107/249 (42%), Gaps = 40/249 (16%)
Query: 7 DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELN---------- 56
++ K T N + +W +++ A+L L + P E T +N
Sbjct: 29 NVTKLTSTN-YLMWSIQIHALLDGYDLAGYLDNSV-----VIPPETTTINSVVSANPSFT 82
Query: 57 -----DKAV-SAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFY 110
DK + SA+I + V VSR T + +W+ L++ Y S H + L+QQ+
Sbjct: 83 LWKRQDKLIFSALIGAISPAVQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQI--Q 140
Query: 111 RMVE-SKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEG 169
R+ + +K I E + +D LA + +E E++ H+L LP ++ D + GK+
Sbjct: 141 RLTKGTKTIDEYVQSHTTRLDQLAILGKPMEHEEQVEHILKGLPEEYKTVVD-QIEGKDN 199
Query: 170 TITLEEVQAALRTKELTKFKELKVDDSGE-------------GLNVSRGRSQNRGKGKGK 216
T T+ E+ L E +K +V S N ++ + +NR +G
Sbjct: 200 TPTITEIHERLINHE-SKLLSDEVPPSSSFPMSANAVQQRNFNNNCNQNQHKNRYQGNTH 258
Query: 217 NSRSKSRSK 225
N+ + + S+
Sbjct: 259 NNNTNTNSQ 267
>At1g42380 hypothetical protein
Length = 143
Score = 55.1 bits (131), Expect = 3e-07
Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 112 MVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLY-GKEGT 170
M E+K I E + +F KI+ +L +I + + DE +A+ LL +LP ++ +TM Y
Sbjct: 1 MQENKKIDENIDDFLKIVVDLNHIQIEVRDEVQAILLLSSLPSRYDGLVETMKYSNSREK 60
Query: 171 ITLEEVQAALRTKELTKFKELKVDDSGEGLNVSR---GRSQNRGKGKGKNSRSKSRSKGD 227
+ L +V A R KE + ++ EG R G++ N+G KGKN RS S+S D
Sbjct: 61 LRLNDVMVAARDKEREMSQNNRL--IAEGHYARRRPVGKNNNQG-NKGKN-RSWSKS-AD 115
Query: 228 GNKTQYKCFIC 238
G + C+IC
Sbjct: 116 GKRV---CWIC 123
>At3g29782 hypothetical protein
Length = 1130
Score = 54.7 bits (130), Expect = 3e-07
Identities = 49/224 (21%), Positives = 100/224 (43%), Gaps = 9/224 (4%)
Query: 11 FTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELN-DKAVSAIIMCLG- 68
F G + F W+ KMR L+ L + + T T D C G
Sbjct: 71 FDGKSGFKTWQEKMRYYLVSINMERYLPEDPPIVPQGTTYVYTVGGMDTWAQGDYCCKGL 130
Query: 69 --DKVLREV----SRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQL 122
+++L ++ S+ ++ ++W L++ Y T ++ + ++MV+SKPIMEQ+
Sbjct: 131 ILNRLLNDLFDLYSKAKSSKTLWLTLENKYKTDESRMQRFSTAKFLNFKMVDSKPIMEQV 190
Query: 123 TEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRT 182
+I + +++ + K L+ LP + +FK+ + + K +T +++ L
Sbjct: 191 EALQRICQEIELEGMSICNVFKTNCLIEKLPPGWSDFKNYLNF-KRKAMTFDDLIRRLMI 249
Query: 183 KELTKFKELKVDDSGEGLNVSRGRSQNRGKGKGKNSRSKSRSKG 226
+ + + G +NV+ +++ +GKGKG + K+ G
Sbjct: 250 EGNNRGAHAGAQNQGHDVNVAEHKAKLKGKGKGFSIPQKNLKIG 293
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.360 0.161 0.601
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,758,094
Number of Sequences: 26719
Number of extensions: 1000971
Number of successful extensions: 4826
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 4668
Number of HSP's gapped (non-prelim): 110
length of query: 1308
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1197
effective length of database: 8,352,787
effective search space: 9998286039
effective search space used: 9998286039
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 66 (30.0 bits)
Medicago: description of AC126786.10