BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126782.8 + phase: 0 /pseudo
         (250 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g50375 cyclopropyl isomerase (CPI1)                                267  3e-72
At4g03560 two-pore calcium channel (AtTPC1)                            30  1.6
At5g40470 unknown protein                                              29  2.7
At1g65550 hypothetical protein                                         29  2.7
At1g06740 mudrA-like protein                                           29  2.7
At5g48780 putative protein                                             28  6.0
At4g24140 unknown protein                                              28  6.0
At4g27730 unknown protein                                              27  7.9

>At5g50375 cyclopropyl isomerase (CPI1)
          Length = 280

 Score =  267 bits (683), Expect = 3e-72
 Identities = 150/283 (53%), Positives = 175/283 (61%), Gaps = 66/283 (23%)

Query: 24  SASPTPSLWFAPNLSKRWGELFFLLYTPFWLSLSLGIVVPYKLYENFTELEYLLLGLISA 83
           S S +PSLW APN SKRWGELFFL YTPFWL+L LGIVVPYKLYE FTELEYLLL L+SA
Sbjct: 2   SGSSSPSLWLAPNPSKRWGELFFLFYTPFWLTLCLGIVVPYKLYETFTELEYLLLALVSA 61

Query: 84  VPAFLIPMLFVGKADKGISWQDRYWVKSMDNNLQLC---------WELFLDSLL------ 128
           VPAF+IPML VGKAD+ + W+DRYWVK+   NL +          W  +   +L      
Sbjct: 62  VPAFVIPMLLVGKADRSLCWKDRYWVKA---NLWIIVFSYVGNYFWTHYFFKVLGASYTF 118

Query: 129 -------------FHSSGCILYLSFMEN---------------------EQSYLETLAIS 154
                        F +  C L+     N                     E +++  LA+S
Sbjct: 119 PSWKMNNVPHTTFFLTHVCFLFYHVASNITLRRLRHSTADLPDSLKWCFEAAWI--LALS 176

Query: 155 NFPYY------------EFVDRESMYKVGSLFYAIYFIVSFPMFLRIDEKPGDKWDLPRV 202
            F  Y            EFVDR +MY+VG LFYAIYFIVSFPMF R+DEK  D+WDL RV
Sbjct: 177 YFIAYLETIAIANFPYYEFVDRSAMYRVGCLFYAIYFIVSFPMFFRMDEKSTDEWDLSRV 236

Query: 203 AVDALGAAMLVTIILDLWRIFLGPIVPVSEAKQCSPTGLPWFS 245
           AVDALGAAMLVTIILDLWR+FLGPIVP+ E + C  +GLPWFS
Sbjct: 237 AVDALGAAMLVTIILDLWRLFLGPIVPLPEGQNCLQSGLPWFS 279


>At4g03560 two-pore calcium channel (AtTPC1)
          Length = 733

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 24  SASPTPSLWFAPNLSKRWGELFFLLYTPFWLSLSLGIVVPYKLYENFTE 72
           + S  P +W     S RW  +FF+LY    +     +++   +Y++F E
Sbjct: 263 TTSNNPDVWIPAYKSSRWSSVFFVLYVLIGVYFVTNLILAV-VYDSFKE 310


>At5g40470 unknown protein
          Length = 496

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 17/38 (44%), Positives = 20/38 (51%)

Query: 20 SSSSSASPTPSLWFAPNLSKRWGELFFLLYTPFWLSLS 57
          SSSSS+S  PS    P +SKRW  L+    T   L  S
Sbjct: 23 SSSSSSSSLPSFESVPLVSKRWLRLYRASKTSMSLQFS 60


>At1g65550 hypothetical protein
          Length = 515

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 41/171 (23%), Positives = 71/171 (40%), Gaps = 43/171 (25%)

Query: 75  YLL-LGLISAVPAFLIPMLFVGKADKGISWQDRYWVKSMDNNLQLCWELFLDSLLFHSSG 133
           YLL LG+   +P+ L+P++  G A+K         VK             + +LLF S  
Sbjct: 51  YLLSLGITVLIPSVLVPLMGGGYAEK---------VK------------VIQTLLFVSGL 89

Query: 134 CILYLSFMENEQSYLETLAISNFPYYEFVDRESMYKVGSLFYA---IYFIVSFPMFLRID 190
             L+ SF       L  +A++++ Y        +  + S+ Y+    Y+   F  F+R  
Sbjct: 90  TTLFQSFFGTR---LPVIAVASYAY--------IIPITSIIYSTRFTYYTDPFERFVRTM 138

Query: 191 EKPGDKWDLPRVAVDALGAAMLVTIILDLWRIFLGPIVPVSEAKQCSPTGL 241
                     + A+   G   ++  IL +WR  +  + P+S A   + TGL
Sbjct: 139 RS-------IQGALIITGCFQVLICILGVWRNIVRFLSPLSIAPLATFTGL 182


>At1g06740 mudrA-like protein
          Length = 726

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 6   LFSKSLFCVSVLEISSS----SSASPTPSLWFAPNLSKRWGELFF 46
           LF ++  C++VLE  S        SP  SLW       RW   +F
Sbjct: 463 LFWEAAHCLTVLEFKSKINKIEQISPEASLWIQNKSPARWASSYF 507


>At5g48780 putative protein
          Length = 669

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 28/109 (25%), Positives = 47/109 (42%), Gaps = 16/109 (14%)

Query: 118 LCWELFLDSLLFHSSGCILYLS-FMENEQSYLETLAISNFPYYEFVDRESMYKVGSLFYA 176
           LC +  L  L FH SG ++ +  F E +   +       +  +   +RE+  KV +   A
Sbjct: 82  LCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQA 141

Query: 177 IYFIVSFPMFLRIDEKPGDKWDLPRVAVDALGAAMLV-TIILDLWRIFL 224
           +  +VS P       +  + WD         G A L+  I +D+W IF+
Sbjct: 142 LSQLVSIP-----GGQYSEIWD---------GDAELIHQITVDIWNIFV 176


>At4g24140 unknown protein
          Length = 498

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 19/75 (25%), Positives = 36/75 (47%), Gaps = 2/75 (2%)

Query: 87  FLIPMLFVGKADKGIS--WQDRYWVKSMDNNLQLCWELFLDSLLFHSSGCILYLSFMENE 144
           F + +L  GK+ K     +  R  V+ ++ ++   + +    ++ HS GCIL LS     
Sbjct: 251 FAVDLLGFGKSPKPADSLYTLREHVEMIEKSVLHKYNVKSFHIVAHSLGCILALSLAARH 310

Query: 145 QSYLETLAISNFPYY 159
              +++L +   PYY
Sbjct: 311 GGLIKSLTLLAPPYY 325


>At4g27730 unknown protein
          Length = 736

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 16/46 (34%), Positives = 25/46 (53%), Gaps = 2/46 (4%)

Query: 70  FTELEYLLLGLISAVPAFLIPMLFVGKADKGISWQDRYWVKSMDNN 115
           +T+  Y+L G + A  AF+  +LF+    KGI  Q  +W  S D +
Sbjct: 672 WTKYNYVLSGGLDAGSAFMTILLFLALGRKGIEVQ--WWGNSGDRD 715


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.326    0.141    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,819,725
Number of Sequences: 26719
Number of extensions: 248787
Number of successful extensions: 788
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 10
length of query: 250
length of database: 11,318,596
effective HSP length: 97
effective length of query: 153
effective length of database: 8,726,853
effective search space: 1335208509
effective search space used: 1335208509
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)