BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126782.2 - phase: 0 /pseudo
         (912 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g03670 hypothetical protein                                         30  6.2
orf170 -mitochondrial genome-                                          30  8.1

>At1g03670 hypothetical protein
          Length = 643

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 25/68 (36%), Positives = 30/68 (43%), Gaps = 9/68 (13%)

Query: 539 LKTPIMYAFFANHSMGLNKLLELGVSDLPTTCHL--------LVFLKANVIT-LFSCTRK 589
           L  P++     +  M     L L VSDLP   HL        LVFL   +I   FS TR 
Sbjct: 557 LALPLLLTAVVSMMMASVAGLTLVVSDLPWLSHLVLAIDSAFLVFLMLLIIPYAFSSTRH 616

Query: 590 TLIWHIFY 597
             + HIFY
Sbjct: 617 GFLRHIFY 624


>orf170 -mitochondrial genome-
          Length = 170

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 506 DLGKFISWMSRMLFFMVN*KKQCTCTNLWDLKIL 539
           ++G+ I+WM +M F M   KK+  C NL  L+IL
Sbjct: 129 EVGQSINWMFKMHFSMGIFKKKFICINLLVLRIL 162


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.346    0.153    0.515 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,327,673
Number of Sequences: 26719
Number of extensions: 724939
Number of successful extensions: 2457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2456
Number of HSP's gapped (non-prelim): 2
length of query: 912
length of database: 11,318,596
effective HSP length: 108
effective length of query: 804
effective length of database: 8,432,944
effective search space: 6780086976
effective search space used: 6780086976
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 65 (29.6 bits)