BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126781.9 + phase: 0
(195 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16670 putative retroelement pol polyprotein 257 2e-69
At4g22040 LTR retrotransposon like protein 248 1e-66
At2g13940 putative retroelement pol polyprotein 247 3e-66
At1g57640 246 4e-66
At2g23330 putative retroelement pol polyprotein 242 8e-65
At3g22340 hypothetical protein 240 3e-64
At2g07010 putative retroelement pol polyprotein 233 4e-62
At2g06840 putative retroelement pol polyprotein 221 2e-58
At2g24660 putative retroelement pol polyprotein 198 2e-51
At2g16000 putative retroelement pol polyprotein 196 5e-51
At2g15870 putative retroelement pol polyprotein 196 9e-51
At4g14460 retrovirus-related like polyprotein 195 1e-50
At4g10990 putative retrotransposon polyprotein 194 3e-50
At2g20460 putative retroelement pol polyprotein 193 6e-50
At1g47650 hypothetical protein 186 9e-48
At1g70010 hypothetical protein 179 1e-45
At1g26990 polyprotein, putative 177 2e-45
At4g02960 putative polyprotein of LTR transposon 176 9e-45
At2g15920 putative retroelement pol polyprotein 175 2e-44
At1g59265 polyprotein, putative 174 2e-44
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 257 bits (657), Expect = 2e-69
Identities = 124/195 (63%), Positives = 151/195 (76%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M +PR +HW AALRVVR+LK +PGQG+F D ++ GWCDSDWA P++RRSVTG+ V
Sbjct: 1139 MQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFV 1198
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
Q GDSPISWKTKKQ TVS+SSAEAEYR+M+ EL WLK +L +LGV H +PMI+ CDS
Sbjct: 1199 QFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDS 1258
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
++AI+IA NPVFHERTKHIE+D HFVR+E +K I P +V T +Q ADIFTK LG+ F
Sbjct: 1259 KSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGRDCFS 1318
Query: 181 FLLGKLGIRNLHAPT 195
KLGIRNL+APT
Sbjct: 1319 AFRIKLGIRNLYAPT 1333
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 248 bits (633), Expect = 1e-66
Identities = 119/195 (61%), Positives = 150/195 (76%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M PR +HW AA+RVVR+LK NPGQGI S S L+++GWCDSD+A+CPLTRRS+TG+ V
Sbjct: 915 MQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFV 974
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
QLGD+PISWKTKKQ T+SRSSAEAEYR+MA T EL WLK +L +LGV H + M I DS
Sbjct: 975 QLGDTPISWKTKKQPTISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDS 1034
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
++AI ++ NPV HERTKH+EVDCHF+R+ +L I +V + Q ADI TKALG+ +
Sbjct: 1035 KSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVR 1094
Query: 181 FLLGKLGIRNLHAPT 195
+ L KLGI ++HAPT
Sbjct: 1095 YFLRKLGILDVHAPT 1109
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 247 bits (630), Expect = 3e-66
Identities = 118/195 (60%), Positives = 145/195 (73%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M PR H++AALRVVR+LKG+PGQGI + DL L +CDSDW SCPLTRRS++ ++V
Sbjct: 1307 MQNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYCDSDWQSCPLTRRSISAYVV 1366
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LG SPISWKTKKQ TVS SSAEAEYR+M+ E+KWL+ +L LG+ P ++CDS
Sbjct: 1367 LLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRKLLKELGIEQSTPARLYCDS 1426
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
+AAIHIA NPVFHERTKHIE DCH VR+ V I +V T Q AD+FTKALG+ QF
Sbjct: 1427 KAAIHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQHVRTTEQLADVFTKALGRNQFL 1486
Query: 181 FLLGKLGIRNLHAPT 195
+L+ KLG++NLH PT
Sbjct: 1487 YLMSKLGVQNLHTPT 1501
>At1g57640
Length = 1444
Score = 246 bits (629), Expect = 4e-66
Identities = 119/194 (61%), Positives = 149/194 (76%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M PR +HW AA+RVVR+LK NPGQGI S S L+++GWCDSD+A+CPLTRRS+TG+ V
Sbjct: 1250 MQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFV 1309
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
QLGD+PISWKTKKQ TVSRSSAEAEYR+MA T EL WLK +L +LGV H + M I DS
Sbjct: 1310 QLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDS 1369
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
++AI ++ NPV HERTKH+EVDCHF+R+ +L I +V + Q ADI TKALG+ +
Sbjct: 1370 KSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVR 1429
Query: 181 FLLGKLGIRNLHAP 194
+ L KLGI ++HAP
Sbjct: 1430 YFLRKLGILDVHAP 1443
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 242 bits (618), Expect = 8e-65
Identities = 118/188 (62%), Positives = 143/188 (75%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M P HWEAALR+VR+LKG+P QGIF S S L ++ +CDSD+ +CPLTRRS++ ++V
Sbjct: 1302 MQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYVV 1361
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LGDSPISWKTKKQ TVS SSAEAEYR+MA T ELKWLK +L +LGV H PM +HCDS
Sbjct: 1362 YLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCDS 1421
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
+AAIHIA NPVFHERTKHIE DCH VR+ VL I ++ T +Q AD+ TK+L +P FE
Sbjct: 1422 EAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEHIYTEDQVADLLTKSLPRPTFE 1481
Query: 181 FLLGKLGI 188
LL LG+
Sbjct: 1482 RLLSTLGV 1489
>At3g22340 hypothetical protein
Length = 220
Score = 240 bits (613), Expect = 3e-64
Identities = 111/179 (62%), Positives = 142/179 (79%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M+ PR EHWEAA+RVVR+LKGNPGQGI + ++L L WCD+D A+CPLTRRS+T W +
Sbjct: 1 MHAPRIEHWEAAVRVVRYLKGNPGQGILLRADAELTLTAWCDADHATCPLTRRSLTAWFI 60
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
QLG SPISWKT+KQ TVSRSSAEAEYRSMA+T E+ WL+ +L LGV P+ + CD+
Sbjct: 61 QLGGSPISWKTRKQDTVSRSSAEAEYRSMADTVSEILWLRQLLITLGVDCSSPIPLFCDN 120
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQF 179
Q+AI+++ NPVFHERTKH+ DCHF+R+E+++ I P +VST Q ADIFTKALG+ +F
Sbjct: 121 QSAIYLSANPVFHERTKHVGSDCHFIRDEIVRGVIAPQHVSTHLQLADIFTKALGRKEF 179
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 233 bits (595), Expect = 4e-62
Identities = 116/192 (60%), Positives = 141/192 (73%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
PR H EAA+R+VR+LKG+PGQGI + DL L +CDSD+ SCPLTRRS++ ++V LG
Sbjct: 1222 PREAHLEAAMRIVRYLKGSPGQGILLSANKDLTLEVYCDSDFQSCPLTRRSLSAYVVLLG 1281
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
SPISWKTKKQ TVS SSAEAEYR+M+ E+KWL +L LG+ P + CDS+AA
Sbjct: 1282 GSPISWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNKLLKELGITLAAPTRLFCDSKAA 1341
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
I IA NPVFHERTKHIE DCH VR+ V I +V T+ Q ADIFTKALG+ QF +L+
Sbjct: 1342 ISIAANPVFHERTKHIERDCHSVRDAVRDGIITTHHVRTSEQLADIFTKALGRNQFIYLM 1401
Query: 184 GKLGIRNLHAPT 195
KLGI+NLH PT
Sbjct: 1402 SKLGIQNLHTPT 1413
>At2g06840 putative retroelement pol polyprotein
Length = 1102
Score = 221 bits (562), Expect = 2e-58
Identities = 111/195 (56%), Positives = 136/195 (68%), Gaps = 4/195 (2%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M P HW A LR+VR+LKG+P QGI S L L +CDSD+ CP TRRS++ +++
Sbjct: 912 MQTPLEAHWHATLRLVRYLKGSPDQGILLRSDRALSLTAYCDSDYNPCPRTRRSLSAYVL 971
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LGD+PISWKTKKQ TVS SSAEAEYR+MA T E+KWLK +++ LGV H +P+++ CDS
Sbjct: 972 YLGDTPISWKTKKQDTVSSSSAEAEYRAMAYTLKEIKWLKALMTTLGVDHTQPILLFCDS 1031
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
QAAIHIA NPVFHERTKHIE DCH VR+ V I ++ST D+ TKAL +P FE
Sbjct: 1032 QAAIHIAANPVFHERTKHIEKDCHQVRDAVTDKVISTPHIST----TDLLTKALPRPTFE 1087
Query: 181 FLLGKLGIRNLHAPT 195
LL LG N PT
Sbjct: 1088 RLLSTLGTCNYDLPT 1102
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 198 bits (503), Expect = 2e-51
Identities = 103/195 (52%), Positives = 129/195 (65%), Gaps = 21/195 (10%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M PR H AA+R+VRFLKG+PGQGI + ++L+L +CDSD+ +CP TRRS++ ++V
Sbjct: 954 MQTPREAHLAAAMRIVRFLKGSPGQGILLNADTELQLDVYCDSDFQTCPKTRRSLSAYVV 1013
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LG SPISWKTKKQ TVS SSAEAEYR+M+ E+KWL+ +L L
Sbjct: 1014 LLGGSPISWKTKKQDTVSHSSAEAEYRAMSVALREIKWLRKLLKELA------------- 1060
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
NPVFHERTKHIE DCH VR+ V I +V T Q ADIFTKALG+ QF
Sbjct: 1061 --------NPVFHERTKHIESDCHSVRDAVRDGIITTHHVRTNEQLADIFTKALGRSQFL 1112
Query: 181 FLLGKLGIRNLHAPT 195
+L+ KLGI++LH PT
Sbjct: 1113 YLMSKLGIQDLHTPT 1127
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 196 bits (499), Expect = 5e-51
Identities = 101/188 (53%), Positives = 132/188 (69%), Gaps = 1/188 (0%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
PRT H AA RV++++KG GQG+F+ + SDL L G+ DSDWASC +RRS T + + +G
Sbjct: 1263 PRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVG 1322
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
DS ISW++KKQHTVSRSSAEAEYR++A TCE+ WL +L +L P I++ DS AA
Sbjct: 1323 DSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQASPPVP-ILYSDSTAA 1381
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
I+IA NPVFHERTKHI++DCH VR + + ++V T +Q ADI TK L QFE L
Sbjct: 1382 IYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLK 1441
Query: 184 GKLGIRNL 191
K+ I N+
Sbjct: 1442 SKMSILNI 1449
>At2g15870 putative retroelement pol polyprotein
Length = 1264
Score = 196 bits (497), Expect = 9e-51
Identities = 101/188 (53%), Positives = 132/188 (69%), Gaps = 1/188 (0%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
P T H +AA RV++++KG GQG+F+ + SDL L G+ DSDWASCP +R S TG+ + +G
Sbjct: 1073 PTTAHLQAAHRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCPDSRHSTTGFTMFVG 1132
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
DS IS ++KKQH VSRSSAEAEYR++A TCEL WL +L++L P I+ DS AA
Sbjct: 1133 DSLISLRSKKQHVVSRSSAEAEYRALALATCELVWLHTLLASLTAATTIP-ILFSDSTAA 1191
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
I+IA NPVFHERTKHIE+DCH VR ++ + ++V T +Q ADI TK L QFE L
Sbjct: 1192 IYIAINPVFHERTKHIEIDCHTVREKIDDGELKLLHVRTEDQVADIMTKPLFPNQFEHLK 1251
Query: 184 GKLGIRNL 191
K+ I N+
Sbjct: 1252 SKMSILNI 1259
>At4g14460 retrovirus-related like polyprotein
Length = 1489
Score = 195 bits (495), Expect = 1e-50
Identities = 91/194 (46%), Positives = 135/194 (68%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
++ P H +AA +V+R++K NPGQG+ + + ++ L+G+ D+DWA+C TRRS++G+ +
Sbjct: 1290 ISAPSDIHLQAAHKVLRYIKANPGQGLMYSADYEICLNGFSDADWAACKDTRRSISGFCI 1349
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LG S ISWK+KKQ SRSS E+EYRSMA TCE+ WL+ +L +L + P + CD+
Sbjct: 1350 YLGTSLISWKSKKQAVASRSSTESEYRSMAQATCEIIWLQQLLKDLHIPLTCPAKLFCDN 1409
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
++A+H + NPVFHERTKHIE+DCH VR+++ N+ ++V T NQ ADI TKAL F
Sbjct: 1410 KSALHSSLNPVFHERTKHIEIDCHTVRDQIKAGNLKALHVPTENQHADILTKALHPGPFH 1469
Query: 181 FLLGKLGIRNLHAP 194
LL ++ + +L P
Sbjct: 1470 HLLRQMSLSSLFLP 1483
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 194 bits (492), Expect = 3e-50
Identities = 89/174 (51%), Positives = 127/174 (72%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
++ P H +AA +V+R+LKGNPGQG+ + + S+L L+G+ D+DW +C +RRSVTG+ +
Sbjct: 845 LSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNGFSDADWGTCKDSRRSVTGFCI 904
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LG S I+WK+KKQ VSRSS E+EYRS+A TCE+ WL+ +L +L V P + CD+
Sbjct: 905 YLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDN 964
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKAL 174
++A+H+A NPVFHERTKHIE+DCH VR+++ + ++V T NQ ADI TK L
Sbjct: 965 KSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLHVPTGNQLADILTKPL 1018
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 193 bits (490), Expect = 6e-50
Identities = 95/188 (50%), Positives = 132/188 (69%), Gaps = 1/188 (0%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
PRT H A +V++++KG GQG+F+ ++ DL L G+ D+DW +CP +RRS TG+ + +G
Sbjct: 1270 PRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVG 1329
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
S ISW++KKQ TVSRSSAEAEYR++A +CE+ WL +L L VH I++ DS AA
Sbjct: 1330 SSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLSTLLLALR-VHSGVPILYSDSTAA 1388
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
++IA NPVFHERTKHIE+DCH VR ++ + ++V T +Q ADI TK L QF LL
Sbjct: 1389 VYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVKTKDQVADILTKPLFPYQFAHLL 1448
Query: 184 GKLGIRNL 191
K+ I+N+
Sbjct: 1449 SKMSIQNI 1456
>At1g47650 hypothetical protein
Length = 1409
Score = 186 bits (471), Expect = 9e-48
Identities = 89/164 (54%), Positives = 123/164 (74%), Gaps = 1/164 (0%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
PRT H +AA RV++++KG+ GQG+F+ + +DL L G+ DSDWASCP +RRS TG+ + +G
Sbjct: 1054 PRTSHLQAAYRVLQYIKGSVGQGLFYSASADLTLKGFADSDWASCPDSRRSTTGFSMFVG 1113
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
DS ISW++KKQH VSRSSAEAEYR++A TCEL WL +L +L + P +++ DS A
Sbjct: 1114 DSLISWRSKKQHVVSRSSAEAEYRALALVTCELVWLHTLLMSLKASYLVP-VLYSDSTTA 1172
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPA 167
I+IA NPVFHERTKHIE+DCH VR ++ + ++V T +QP+
Sbjct: 1173 IYIATNPVFHERTKHIELDCHTVREKLDNGELKLLHVRTEDQPS 1216
>At1g70010 hypothetical protein
Length = 1315
Score = 179 bits (453), Expect = 1e-45
Identities = 89/188 (47%), Positives = 126/188 (66%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
PR H +A ++++++KG GQG+F+ + S+L+L + ++D+ SC +RRS +G+ + LG
Sbjct: 1124 PRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLG 1183
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
DS I WK++KQ VS+SSAEAEYRS++ T EL WL L L V KP ++ CD++AA
Sbjct: 1184 DSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAA 1243
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
IHIA N VFHERTKHIE DCH VR +LK +++T Q AD FTK L F L+
Sbjct: 1244 IHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIADPFTKPLYPSHFHRLI 1303
Query: 184 GKLGIRNL 191
K+G+ N+
Sbjct: 1304 SKMGLLNI 1311
>At1g26990 polyprotein, putative
Length = 1436
Score = 177 bits (450), Expect = 2e-45
Identities = 89/189 (47%), Positives = 124/189 (65%)
Query: 4 PRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLG 63
P H +A +++R+LKG GQG+F+G+ ++ L G+ DSDW +CP TRR VTG+ + +G
Sbjct: 1244 PTDIHLQALHKILRYLKGTIGQGLFYGADTNFDLRGFSDSDWQTCPDTRRCVTGFAIFVG 1303
Query: 64 DSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAA 123
+S +SW++KKQ VS SSAEAEYR+M+ T EL WL IL+ + P ++CD++AA
Sbjct: 1304 NSLVSWRSKKQDVVSMSSAEAEYRAMSVATKELIWLGYILTAFKIPFTHPAYLYCDNEAA 1363
Query: 124 IHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLL 183
+HIA N VFHERTKHIE DCH VR + + ++V T NQ AD TK L F
Sbjct: 1364 LHIANNSVFHERTKHIENDCHKVRECIEAGILKTIFVRTDNQLADTLTKPLYPKPFRENN 1423
Query: 184 GKLGIRNLH 192
KLG+ N++
Sbjct: 1424 SKLGLLNIY 1432
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 176 bits (445), Expect = 9e-45
Identities = 86/188 (45%), Positives = 117/188 (61%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M+ P +HW A RV+R+L G P GIF + L LH + D+DWA S G+IV
Sbjct: 1256 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIV 1315
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LG PISW +KKQ V RSS EAEYRS+ANT+ EL+W+ +L+ LG+ P +I+CD+
Sbjct: 1316 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDN 1375
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
A ++ NPVFH R KHI +D HF+RN+V + V+VST +Q AD TK L + F+
Sbjct: 1376 VGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQ 1435
Query: 181 FLLGKLGI 188
K+G+
Sbjct: 1436 NFSRKIGV 1443
>At2g15920 putative retroelement pol polyprotein
Length = 1100
Score = 175 bits (443), Expect = 2e-44
Identities = 95/187 (50%), Positives = 126/187 (66%), Gaps = 1/187 (0%)
Query: 5 RTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIVQLGD 64
RT H +AA RV++++KG GQG+F+ + SDL L G+ DSDW SC +RRS TG+ + +GD
Sbjct: 906 RTTHLQAAHRVLQYIKGIVGQGLFYSASSDLTLKGFADSDWVSCADSRRSTTGFTMFVGD 965
Query: 65 SPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDSQAAI 124
S IS ++KKQ VSRSSAEAEYR++A TCEL L +L +L P I+ +S AI
Sbjct: 966 SLISLRSKKQRVVSRSSAEAEYRALALATCELVSLHTLLVSLTAATSVP-ILFSNSTTAI 1024
Query: 125 HIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFEFLLG 184
+IA NPVFHERTKH E+DC+ VR +V + ++V T +Q ADI TK L QFE L
Sbjct: 1025 YIAINPVFHERTKHTEIDCNTVREKVDDGELKLLHVRTEDQVADIMTKPLSPHQFEHLKF 1084
Query: 185 KLGIRNL 191
K+ I N+
Sbjct: 1085 KMSILNI 1091
>At1g59265 polyprotein, putative
Length = 1466
Score = 174 bits (442), Expect = 2e-44
Identities = 84/188 (44%), Positives = 118/188 (62%)
Query: 1 MNQPRTEHWEAALRVVRFLKGNPGQGIFFGSKSDLRLHGWCDSDWASCPLTRRSVTGWIV 60
M+ P EH +A R++R+L G P GIF + L LH + D+DWA S G+IV
Sbjct: 1273 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1332
Query: 61 QLGDSPISWKTKKQHTVSRSSAEAEYRSMANTTCELKWLKGILSNLGVVHDKPMIIHCDS 120
LG PISW +KKQ V RSS EAEYRS+ANT+ E++W+ +L+ LG+ +P +I+CD+
Sbjct: 1333 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDN 1392
Query: 121 QAAIHIAKNPVFHERTKHIEVDCHFVRNEVLKNNILPVYVSTANQPADIFTKALGKPQFE 180
A ++ NPVFH R KHI +D HF+RN+V + V+VST +Q AD TK L + F+
Sbjct: 1393 VGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQ 1452
Query: 181 FLLGKLGI 188
K+G+
Sbjct: 1453 NFASKIGV 1460
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,470,027
Number of Sequences: 26719
Number of extensions: 174642
Number of successful extensions: 489
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 118
length of query: 195
length of database: 11,318,596
effective HSP length: 94
effective length of query: 101
effective length of database: 8,807,010
effective search space: 889508010
effective search space used: 889508010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC126781.9