BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126781.3 + phase: 0 
         (77 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g57170 light-inducible protein ATLS1-like                          104  9e-24
At5g01650 light-inducible protein ATLS1                                90  2e-19
At3g51660 LS1-like protein                                             59  4e-10
At5g64460 putative phosphoglycerate mutase                             25  5.3
At3g13090 ABC transporter like protein                                 25  5.3
At1g30400 AtMRP1                                                       25  5.3

>At5g57170 light-inducible protein ATLS1-like
          Length = 115

 Score =  104 bits (259), Expect = 9e-24
 Identities = 53/75 (70%), Positives = 58/75 (76%)

Query: 3   ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
           IL+N GV IAF GTEEPAAYGELISIGGL P VN KLS TI++I+Q  L I SSRFYIKF
Sbjct: 41  ILLNSGVPIAFAGTEEPAAYGELISIGGLGPGVNGKLSETISEILQIKLSIDSSRFYIKF 100

Query: 63  SDVQPSFVGFNGSTF 77
            D    F G+NGSTF
Sbjct: 101 YDSPRPFFGYNGSTF 115


>At5g01650 light-inducible protein ATLS1
          Length = 115

 Score = 89.7 bits (221), Expect = 2e-19
 Identities = 40/74 (54%), Positives = 58/74 (78%)

Query: 3   ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
           I++ G V ++FGGTE+PAAYGEL+SIGGL+  VN KLS+ ++ I++T L +  SRF++KF
Sbjct: 41  IVLKGSVPMSFGGTEDPAAYGELVSIGGLNADVNKKLSAAVSAILETKLSVPKSRFFLKF 100

Query: 63  SDVQPSFVGFNGST 76
            D + SF G+NG+T
Sbjct: 101 YDTKGSFFGWNGAT 114


>At3g51660 LS1-like protein
          Length = 112

 Score = 58.9 bits (141), Expect = 4e-10
 Identities = 25/63 (39%), Positives = 40/63 (62%)

Query: 3   ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
           +++ G V I FGG +E AAY E++S+GG+   V  +L +T+  I+ T+  IH +RF  K 
Sbjct: 41  VVLKGSVEIVFGGNKEAAAYAEIVSMGGITKQVKRELIATVGSILHTHFSIHPTRFIFKV 100

Query: 63  SDV 65
            D+
Sbjct: 101 FDI 103


>At5g64460 putative phosphoglycerate mutase
          Length = 282

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 30  GLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKFSDVQPSFVGFNGST 76
           GL   +   +SS + + +QT + +     Y   SDV P  V   G++
Sbjct: 68  GLHKKIELVISSPLMRTLQTAVGVFGGEGYTDMSDVLPLMVANAGNS 114


>At3g13090 ABC transporter like protein
          Length = 1466

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 38  KLSSTIAQIIQTNLHIHSSRFYIKFSDVQPSFVG 71
           KL  TI+ I+QT + ++    ++   D+Q   VG
Sbjct: 557 KLPETISMIVQTKVSLNRIASFLCLDDLQQDVVG 590


>At1g30400 AtMRP1
          Length = 1622

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 7/24 (29%), Positives = 17/24 (70%)

Query: 40  SSTIAQIIQTNLHIHSSRFYIKFS 63
           S+ +  +++T  +IH  R+Y++F+
Sbjct: 123 SALVMTVVETKTYIHELRWYVRFA 146


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,620,626
Number of Sequences: 26719
Number of extensions: 49174
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 6
length of query: 77
length of database: 11,318,596
effective HSP length: 53
effective length of query: 24
effective length of database: 9,902,489
effective search space: 237659736
effective search space used: 237659736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)