BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126018.36 + phase: 0 
         (475 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

rbcL -chloroplast genome- large subunit of riblose-1,5-bisphosph...   930  0.0
orf110a -mitochondrial genome-                                        181  8e-46
At1g13630 hypothetical protein                                         32  0.76

>rbcL -chloroplast genome- large subunit of riblose-1,5-bisphosphate
           carboxylase/oxygenase
          Length = 479

 Score =  930 bits (2403), Expect = 0.0
 Identities = 446/475 (93%), Positives = 463/475 (96%)

Query: 1   MSPQTETKATVGFKAGVKDYRLTYYTPDYETKDTDILAAFRVSPQPGVPAEEAGAAVAAE 60
           MSPQTETKA+VGFKAGVK+Y+LTYYTP+YETKDTDILAAFRV+PQPGVP EEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 61  SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEESQFIAYVAYPLDLFEEGSVTNMFTSI 120
           SSTGTWTTVWTDGLTSLDRYKGRCYHIEPV GEE+QFIAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGEETQFIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 121 VGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180
           VGNVFGFKAL ALRLEDLRIP AY KTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALAALRLEDLRIPPAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180

Query: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL 240
           SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYK+QAETGEIKGHYL
Sbjct: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYL 240

Query: 241 NATAGTCEDMMKRAVFARELGVPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIHRAMHAV 300
           NATAGTCE+M+KRAVFARELGVPIVMHDYLTGGFTANT+L+HYCRDNGLLLHIHRAMHAV
Sbjct: 241 NATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLSHYCRDNGLLLHIHRAMHAV 300

Query: 301 IDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSR 360
           IDRQKNHGMHFRVLAKALR+SGGDHIHAGTVVGKLEG+R+ TLGFVDLLRDD+VEKDRSR
Sbjct: 301 IDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGDRESTLGFVDLLRDDYVEKDRSR 360

Query: 361 GIFFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420
           GIFFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN
Sbjct: 361 GIFFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420

Query: 421 RVALEACVQARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI 475
           RVALEACVQARNEGRDLA EGNEIIREA KWSPELAAACEVWKEI F FP +D +
Sbjct: 421 RVALEACVQARNEGRDLAVEGNEIIREACKWSPELAAACEVWKEITFNFPTIDKL 475


>orf110a -mitochondrial genome-
          Length = 110

 Score =  181 bits (459), Expect = 8e-46
 Identities = 85/92 (92%), Positives = 88/92 (95%)

Query: 182 AKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLN 241
           AKNYGRAVYECLRGGL FTKDDENVNSQPFMRWRDRFLFCAEA+YKAQAETG IKGHYLN
Sbjct: 14  AKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLN 73

Query: 242 ATAGTCEDMMKRAVFARELGVPIVMHDYLTGG 273
           ATAGTCE+M+KRAVFARELGVPIVMHDYL  G
Sbjct: 74  ATAGTCEEMIKRAVFARELGVPIVMHDYLNRG 105


>At1g13630 hypothetical protein
          Length = 764

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 26/86 (30%), Positives = 38/86 (43%), Gaps = 10/86 (11%)

Query: 275 TANTTLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGK 334
           T N+T  H     G    I   M  +  R+  HG HFR L   LR     H+H   ++ +
Sbjct: 8   TTNSTSDH----RGFYKEILFGMKKIGFREFLHGYHFRGLVSELR-----HVHVEEIMDE 58

Query: 335 LEGE-RDITLGFVDLLRDDFVEKDRS 359
           L  E  D+++ F   LRD +  +  S
Sbjct: 59  LMSESSDLSVWFFKELRDIYAFRHSS 84


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,963,290
Number of Sequences: 26719
Number of extensions: 471739
Number of successful extensions: 855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 3
length of query: 475
length of database: 11,318,596
effective HSP length: 103
effective length of query: 372
effective length of database: 8,566,539
effective search space: 3186752508
effective search space used: 3186752508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)