BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126014.4 + phase: 0
(91 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10160 putative reverse transcriptase 33 0.025
At2g02520 putative non-LTR retroelement reverse transcriptase 32 0.055
At2g41580 putative non-LTR retroelement reverse transcriptase 32 0.072
At4g04650 31 0.094
At4g09710 RNA-directed DNA polymerase -like protein 31 0.12
At1g26860 hypothetical protein 31 0.12
At5g59060 putative protein 30 0.21
At2g15540 putative non-LTR retroelement reverse transcriptase 30 0.27
At1g34440 hypothetical protein 29 0.36
At5g18880 SAE1-S9-protein - like 28 1.0
At4g01530 putative reverse transcriptase-like protein 28 1.0
At3g45550 putative protein 28 1.0
At3g09510 putative non-LTR reverse transcriptase 28 1.0
At2g31520 putative non-LTR retroelement reverse transcriptase 28 1.0
At2g25550 putative non-LTR retroelement reverse transcriptase 28 1.0
At1g33710 hypothetical protein 28 1.0
At3g31470 hypothetical protein 27 1.4
At3g25727 putative protein 27 1.8
At1g47910 reverse transcriptase, putative 26 3.0
At5g20800 putative protein 26 3.9
>At1g10160 putative reverse transcriptase
Length = 1118
Score = 33.1 bits (74), Expect = 0.025
Identities = 13/47 (27%), Positives = 27/47 (56%)
Query: 13 AGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKL 59
A R+ ++++HA V+ IW+E N RI ++ + L++ ++L
Sbjct: 1034 ASRDRNITLITKLLFHASVYFIWRERNLRIHSNSVRPAHLIIKEIQL 1080
>At2g02520 putative non-LTR retroelement reverse transcriptase
Length = 211
Score = 32.0 bits (71), Expect = 0.055
Identities = 13/42 (30%), Positives = 25/42 (58%)
Query: 17 RSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVK 58
++ T L++ HA V+ IWKE N+R+ + ++ L+ +K
Sbjct: 138 KNVTTILRLSHHASVYTIWKERNARLHDSASRPAAALILEIK 179
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 31.6 bits (70), Expect = 0.072
Identities = 25/85 (29%), Positives = 35/85 (40%), Gaps = 12/85 (14%)
Query: 7 HRFGNLAGAPRSTHTFLQVIWHACVWLIWKETNSRIF----NHKTKEVGLLLDSVKLTSF 62
H GN S H W +W++WK N R+F + VG L+ K
Sbjct: 859 HVIGNCHNTELSPHLRYVSPW--IIWILWKNRNKRLFEGIGSVSLSIVGKALEDCK---- 912
Query: 63 LWLKANKLTSAFSYTD--RWRDPLL 85
WLKA++L + T W PL+
Sbjct: 913 EWLKAHELICSKEPTKDLTWIPPLM 937
>At4g04650
Length = 332
Score = 31.2 bits (69), Expect = 0.094
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 23 LQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKL 59
+++ +H+CV+ IW+E N R+ + ++ +L ++L
Sbjct: 230 IRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQL 266
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 30.8 bits (68), Expect = 0.12
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 31 VWLIWKETNSRIF-NHKTKEVGLLLDSVKLTSFLWLKANKL 70
+W +WK N IF NH E GL+L ++ L + W++A L
Sbjct: 1080 LWHLWKARNRLIFDNHSCSEEGLVLKAI-LDARAWMEAQLL 1119
>At1g26860 hypothetical protein
Length = 240
Score = 30.8 bits (68), Expect = 0.12
Identities = 18/56 (32%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Query: 31 VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA-----NKLTSAFSYTDRWR 81
+W IWK N +IF++ K+ +L + S LW A N+ +F+ DR R
Sbjct: 89 IWYIWKAGNKKIFDNVDKDPLEILHLAEKESDLWKSAQLELHNENFGSFNLEDRNR 144
>At5g59060 putative protein
Length = 110
Score = 30.0 bits (66), Expect = 0.21
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 12 LAGAPRSTH-TFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSV 57
+A PR + T ++I A + IWKE NSRIF+ + + ++ S+
Sbjct: 32 IASQPRPPNATITKLILQASISAIWKERNSRIFSVASCSIPVIRKSI 78
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 29.6 bits (65), Expect = 0.27
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 31 VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANKLTSAFSY 76
+W IWK N IF + + ++LD + +W +AN A Y
Sbjct: 1033 LWYIWKSRNRFIFENVIESPQVILDFAIQEANVWKQANSKEVATEY 1078
>At1g34440 hypothetical protein
Length = 157
Score = 29.3 bits (64), Expect = 0.36
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 12 LAGAPRSTHTFLQVIWHACVWLIWKETNSRIFNHKTKEVGLLLDSVKL 59
LA R+ L++I+ A ++ IW+E N R+ + ++ ++ +K+
Sbjct: 11 LAARNRNITLILKLIFPASLYFIWRERNQRLHSATSRPTTSIIKEIKM 58
>At5g18880 SAE1-S9-protein - like
Length = 295
Score = 27.7 bits (60), Expect = 1.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 21 TFLQVIWHACVWLIWKETNSRIF 43
T L+++ + V+ +WKE N+RIF
Sbjct: 226 TILKLLLQSAVYHVWKERNARIF 248
>At4g01530 putative reverse transcriptase-like protein
Length = 239
Score = 27.7 bits (60), Expect = 1.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 31 VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
+W IWK+ N ++F E +L+ +W +A
Sbjct: 144 LWFIWKDMNKKVFKGIQSESADILNHAMSEKLMWEEA 180
>At3g45550 putative protein
Length = 851
Score = 27.7 bits (60), Expect = 1.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 31 VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANK 69
+W IWK N+ +FN+ + + + K + WL A +
Sbjct: 774 LWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQ 812
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 27.7 bits (60), Expect = 1.0
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 31 VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANK 69
+W IWK N+ +FN + + S K + WL A +
Sbjct: 269 IWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQ 307
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 27.7 bits (60), Expect = 1.0
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 31 VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANK 69
+W IWK N+ +FN + + S K + WL A +
Sbjct: 1309 IWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQ 1347
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 27.7 bits (60), Expect = 1.0
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 31 VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKANK 69
+W IWK N+ +FN + + S K + WL A +
Sbjct: 1535 IWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQ 1573
>At1g33710 hypothetical protein
Length = 210
Score = 27.7 bits (60), Expect = 1.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 17 RSTHTFLQVIWHACVWLIWKETNSRIFNHKT 47
RS T ++I + ++ IWK+ N+ + NH+T
Sbjct: 144 RSPPTLRKLIVQSVLYAIWKQRNNFLHNHET 174
>At3g31470 hypothetical protein
Length = 410
Score = 27.3 bits (59), Expect = 1.4
Identities = 12/34 (35%), Positives = 15/34 (43%)
Query: 31 VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLW 64
+W IW N RIFN K+ L V + W
Sbjct: 259 IWAIWINRNQRIFNEKSSTPAETLTQVLALAQEW 292
>At3g25727 putative protein
Length = 153
Score = 26.9 bits (58), Expect = 1.8
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 23 LQVIWHACVWLIWKETNSRIFNHKTK-EVGLLLD 55
L++ A V+ +WKE NSR+ N ++ G++L+
Sbjct: 85 LRIAHQASVYTLWKERNSRLNNATSRPAAGIILE 118
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 26.2 bits (56), Expect = 3.0
Identities = 11/29 (37%), Positives = 19/29 (64%), Gaps = 1/29 (3%)
Query: 31 VWLIWKETNSRIFNHKTKE-VGLLLDSVK 58
+W IWK N ++F + K+ + +LL +VK
Sbjct: 931 IWYIWKARNEKVFENVDKDPMEILLLAVK 959
>At5g20800 putative protein
Length = 359
Score = 25.8 bits (55), Expect = 3.9
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 31 VWLIWKETNSRIFNHKTKEVGLLLDSVKLTSFLWLKA 67
+W IWK N+++F++ K+ +L + + W A
Sbjct: 230 IWYIWKARNAKLFDNVDKDPLDILSLAEKEAQSWKSA 266
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.326 0.137 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,131,760
Number of Sequences: 26719
Number of extensions: 70682
Number of successful extensions: 242
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 35
length of query: 91
length of database: 11,318,596
effective HSP length: 67
effective length of query: 24
effective length of database: 9,528,423
effective search space: 228682152
effective search space used: 228682152
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC126014.4