BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126009.3 - phase: 0 /pseudo
(60 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32300 uclacyanin I - like predicted GPI-anchored protein 53 3e-08
At3g60270 stellacyanin (uclacyanin 3) - like predicted GPI-ancho... 48 8e-07
At3g27200 blue copper protein, putative 47 2e-06
At5g20230 blue copper binding protein (bcb) 43 3e-05
At3g60280 uclacyanin 3 42 6e-05
At4g12880 blue copper-binding protein, 15K (lamin) 41 1e-04
At2g26720 putative phytocyanin, predicted GPI-anchored protein 41 1e-04
At3g18590 predicted GPI-anchored protein 37 0.001
At5g15350 unknown protein 36 0.003
At3g01070 lamin - like predicted GPI-anchored protein 36 0.004
At2g31050 phytocyanin - like predicted GPI-anchored protein 36 0.004
At5g26330 copper binding protein - like, predicted GPI-anchored ... 35 0.005
At5g07475 putative protein 34 0.012
At2g25060 early nodulin-like predicted GPI-anchored protein 34 0.012
At1g79800 predicted GPI-anchored protein 34 0.012
At3g20570 predicted GPI-anchored protein 33 0.020
At2g44790 phytocyanin, blue copper-binding protein II 32 0.046
At4g31840 predicted GPI-anchored protein 32 0.060
At1g64640 GPI anchored protein like protein 32 0.060
At1g17800 hypothetical protein 31 0.10
>At2g32300 uclacyanin I - like predicted GPI-anchored protein
Length = 261
Score = 52.8 bits (125), Expect = 3e-08
Identities = 23/55 (41%), Positives = 32/55 (57%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
MAS +++I+S+ L + +ATDH +G GWTV WA + F VGDNL
Sbjct: 1 MASREMLIIISVLATTLIGLTVATDHTIGGPSGWTVGASLRTWAAGQTFAVGDNL 55
>At3g60270 stellacyanin (uclacyanin 3) - like predicted
GPI-anchored protein
Length = 187
Score = 48.1 bits (113), Expect = 8e-07
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
M S+ +L + +++ A VGD+ GWT+ +YT W +K FRVGD L
Sbjct: 1 MGSTAATALLLLLLLVAVPAVFAVTFQVGDNDGWTIGVEYTSWVSEKTFRVGDTL 55
>At3g27200 blue copper protein, putative
Length = 174
Score = 46.6 bits (109), Expect = 2e-06
Identities = 20/60 (33%), Positives = 33/60 (54%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
M V++IL S +L A+A H++G +GW D+ W+ D+ F+VGD + +S
Sbjct: 1 MKMQAVLVILVFSGLLSVKTALAARHVIGGSQGWEQSVDFDSWSSDQSFKVGDQIVFKYS 60
>At5g20230 blue copper binding protein (bcb)
Length = 196
Score = 42.7 bits (99), Expect = 3e-05
Identities = 22/45 (48%), Positives = 25/45 (54%), Gaps = 3/45 (6%)
Query: 14 MVLLSSVAIATDHIVGDDKGWTVDFD---YTQWAQDKVFRVGDNL 55
+V + V A D+ VGDD WT D YT WA K FRVGD L
Sbjct: 13 LVFAAVVVFAEDYDVGDDTEWTRPMDPEFYTTWATGKTFRVGDEL 57
>At3g60280 uclacyanin 3
Length = 222
Score = 42.0 bits (97), Expect = 6e-05
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 4 SRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
S V L + + + +V AT VGD GWT + DYT W K FRVGD L
Sbjct: 3 STVAAALLLFLAAVPAVFAATFK-VGDISGWTSNLDYTVWLTGKTFRVGDTL 53
>At4g12880 blue copper-binding protein, 15K (lamin)
Length = 141
Score = 40.8 bits (94), Expect = 1e-04
Identities = 24/59 (40%), Positives = 32/59 (53%), Gaps = 12/59 (20%)
Query: 13 SMVLLSSVAIA------------TDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMF 59
SMVL+S+V +A ++VGD K W + +YT WAQ K F VGD L +F
Sbjct: 4 SMVLISAVVLAFLVAAPIPEVTAKKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLYFVF 62
>At2g26720 putative phytocyanin, predicted GPI-anchored protein
Length = 206
Score = 40.8 bits (94), Expect = 1e-04
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 15 VLLSSVAIA-TDHIVGDDKGWT-VDFDYTQWAQDKVFRVGDNL 55
V L VA+ T H VG+ KGWT + DY WA +VF+VGD L
Sbjct: 17 VTLFGVAVGGTVHKVGNTKGWTMIGGDYEAWASSRVFQVGDTL 59
>At3g18590 predicted GPI-anchored protein
Length = 188
Score = 37.4 bits (85), Expect = 0.001
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 2 ASSRVVLILSISMVLLSSVAIATDHIVGDDKGW------TVDFDYTQWAQDKVFRVGDNL 55
+S ++++++ + + S +T+ VG + GW T+ + QWA D F+VGD L
Sbjct: 3 SSKKIIIVMFLVTFYMFSCVSSTEFEVGGENGWIVPKSKTLGDAFNQWASDNRFKVGDTL 62
>At5g15350 unknown protein
Length = 172
Score = 36.2 bits (82), Expect = 0.003
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 7 VLILSISMVLLSSVAI----ATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMF 59
VLI ++ + L + + A + VG++K W + +YT WAQ K F +GD L +F
Sbjct: 6 VLITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVF 62
>At3g01070 lamin - like predicted GPI-anchored protein
Length = 167
Score = 35.8 bits (81), Expect = 0.004
Identities = 18/53 (33%), Positives = 32/53 (59%), Gaps = 3/53 (5%)
Query: 4 SRVVLILS---ISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGD 53
+RV ++++ ++ +L ++ A VGD+K W + +YT WAQDK F + D
Sbjct: 2 ARVAVLVAGAVLAFLLAATNVTAKRWTVGDNKFWNPNINYTIWAQDKHFYLDD 54
>At2g31050 phytocyanin - like predicted GPI-anchored protein
Length = 200
Score = 35.8 bits (81), Expect = 0.004
Identities = 18/44 (40%), Positives = 26/44 (58%), Gaps = 2/44 (4%)
Query: 14 MVLLSSVAIA-TDHIVGDDKGWTV-DFDYTQWAQDKVFRVGDNL 55
+V L +++ T H VGD GWT+ +Y WA F+VGD+L
Sbjct: 16 LVALFGISVGGTVHKVGDSDGWTIMSVNYETWASTITFQVGDSL 59
>At5g26330 copper binding protein - like, predicted GPI-anchored
protein
Length = 187
Score = 35.4 bits (80), Expect = 0.005
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 12 ISMVLLSSVAIATDHIVGDDKGWTV--DFDYTQWAQDKVFRVGDNL 55
+ M+ LS A+ + VGD GWT + DY WA K F +GD +
Sbjct: 13 VVMLRLSEAAV---YKVGDSAGWTTIANVDYKLWASTKTFHIGDTV 55
>At5g07475 putative protein
Length = 192
Score = 34.3 bits (77), Expect = 0.012
Identities = 15/38 (39%), Positives = 18/38 (46%)
Query: 23 ATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
AT + VGD GW + D W K F GD L +S
Sbjct: 27 ATTYFVGDSSGWDISSDLESWTSGKRFSPGDVLMFQYS 64
>At2g25060 early nodulin-like predicted GPI-anchored protein
Length = 176
Score = 34.3 bits (77), Expect = 0.012
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKG-WTV----DFDYTQWAQDKVFRVGD 53
MASS + + + S++ L S+A A + VG G W + + +T+WAQ F+VGD
Sbjct: 1 MASSSLHVAI-FSLIFLFSLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGD 57
>At1g79800 predicted GPI-anchored protein
Length = 192
Score = 34.3 bits (77), Expect = 0.012
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 2 ASSRVVLILSISMVLLSSVAIA--TDHIVGDDKGWTVDFD-----YTQWAQDKVFRVGDN 54
++ + L+L I ++++S+A D VGD+ GW V Y+ WA F +GD+
Sbjct: 8 STCNLTLMLCICALVVASMAAEGPRDFKVGDEFGWRVPLQNDSAVYSHWASSNRFHIGDS 67
Query: 55 LGTMF 59
L ++
Sbjct: 68 LSFVY 72
>At3g20570 predicted GPI-anchored protein
Length = 203
Score = 33.5 bits (75), Expect = 0.020
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 12 ISMVLLSSVAIATDHIVGDDKGWTVDFD---YTQWAQDKVFRVGDNL 55
+ +++ A A + VG GWTV Y+QWA+ F++GD+L
Sbjct: 16 LCFLMIVDRAYAREFTVGGATGWTVPSGSQVYSQWAEQSRFQIGDSL 62
>At2g44790 phytocyanin, blue copper-binding protein II
Length = 202
Score = 32.3 bits (72), Expect = 0.046
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 34 WTVDFDYTQWAQDKVFRVGDNL 55
WT DY+ WA K FRVGD L
Sbjct: 36 WTTGVDYSGWATGKTFRVGDIL 57
>At4g31840 predicted GPI-anchored protein
Length = 177
Score = 32.0 bits (71), Expect = 0.060
Identities = 21/59 (35%), Positives = 28/59 (46%), Gaps = 6/59 (10%)
Query: 1 MASSR--VVLILSISMVLLSSVAIATDHIVGDDKGWTV----DFDYTQWAQDKVFRVGD 53
MASS V + L IS+ SSV + G W + F + +WAQ F+VGD
Sbjct: 1 MASSSLLVTIFLCISVFFFSSVNANEVTVGGKSGDWKIPPSSSFSFNEWAQKARFKVGD 59
>At1g64640 GPI anchored protein like protein
Length = 191
Score = 32.0 bits (71), Expect = 0.060
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 1 MASSRVVLILSISMVLLSSVA--IATDHIVGDDKGWTVDFD---YTQWAQDKVFRVGDNL 55
++ + VV++L + ++L + +T + VGD W + D Y++W + F++GD+L
Sbjct: 6 LSKTMVVVVLQVMILLGQEIGKVSSTLYKVGDLDAWGIPIDAKVYSKWPKSHSFKIGDSL 65
>At1g17800 hypothetical protein
Length = 140
Score = 31.2 bits (69), Expect = 0.10
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Query: 7 VLILSISMVLLSSVAIA---TDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
+++ + + L ++V A T +IVG D GW WA+ K F GD L
Sbjct: 19 IVMTVLCLFLANAVTYARRPTTYIVGGDDGWDPVVPMDTWARGKTFYAGDIL 70
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,177,940
Number of Sequences: 26719
Number of extensions: 32141
Number of successful extensions: 141
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 36
length of query: 60
length of database: 11,318,596
effective HSP length: 36
effective length of query: 24
effective length of database: 10,356,712
effective search space: 248561088
effective search space used: 248561088
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)
Medicago: description of AC126009.3