
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126009.2 + phase: 0
(184 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04890 unknown protein 60 7e-10
At2g27140 unknown protein 55 2e-08
At5g20970 small heat shock protein -like 52 1e-07
At3g10680 hypothetical protein 38 0.003
At1g76770 putative heat shock protein 38 0.003
At1g54400 hypothetical protein 38 0.003
At1g76780 putative heat shock protein 35 0.017
At3g01780 unknown protein 33 0.11
At5g40340 unknown protein 32 0.25
At5g59720 heat shock protein 18 31 0.33
At1g20696 unknown protein 31 0.33
At1g06460 heat shock protein-like 31 0.33
At3g57230 MADS-box transcription factor (AGL16) 30 0.56
At1g53540 17.6 kDa heat shock protein (AA 1-156) 30 0.56
At4g21870 heat shock protein - like 30 0.73
At1g20693 unknown protein 30 0.73
At1g17690 unknown protein 30 0.73
At5g56030 HEAT SHOCK PROTEIN 81-2 (HSP81-2) (sp|P55737) 30 0.96
At2g45120 putative C2H2-type zinc finger protein 30 0.96
At1g20290 hypothetical protein 30 0.96
>At5g04890 unknown protein
Length = 366
Score = 60.1 bits (144), Expect = 7e-10
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 26/135 (19%)
Query: 11 YEDFDPVFKWRREQDRDTIELHLPG-------------------NGERPFDGTKWKRFKK 51
YEDF P +W+ + + + + L G GERP KW RF +
Sbjct: 16 YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNE 75
Query: 52 EFELPKYCNEDAIRGNFMQNILSVVLPK----KVDLIPQEEQEEEEKIPELEDLDKYQEK 107
F +P+ C D I G+F N+L++ +PK KV +P+ + E LE K +EK
Sbjct: 76 VFTVPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPETSRTE---AAALEKAAKLEEK 132
Query: 108 NTYKSLGFGGRDREE 122
+ ++ EE
Sbjct: 133 RLLEESRRKEKEEEE 147
>At2g27140 unknown protein
Length = 224
Score = 55.1 bits (131), Expect = 2e-08
Identities = 30/96 (31%), Positives = 48/96 (49%), Gaps = 19/96 (19%)
Query: 2 EHKHAHNRSYEDFDPVFKWRREQDRDTIELHLPG------------------NGERPFDG 43
+H +A NR Y++F+P+ W+ EQ + + ++LPG G+RP
Sbjct: 6 DHANA-NRIYDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGA 64
Query: 44 TKWKRFKKEFELPKYCNEDAIRGNFMQNILSVVLPK 79
KW RF+KEF +P + D++ F L V LP+
Sbjct: 65 NKWIRFRKEFPIPPNIDVDSVSAKFEGANLVVRLPR 100
>At5g20970 small heat shock protein -like
Length = 249
Score = 52.4 bits (124), Expect = 1e-07
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 9 RSYEDFDPVFKWRREQDRDTIELHLPG------------------NGERPFDGTKWKRFK 50
R Y++F+P +W E D + + LPG GERP G KW RF
Sbjct: 8 RVYQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFH 67
Query: 51 KEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQ 86
+E +P + D++ F N L + PK IPQ
Sbjct: 68 QEIPVPLTVDIDSVSAMFKDNKLYIRHPKLKTEIPQ 103
>At3g10680 hypothetical protein
Length = 490
Score = 38.1 bits (87), Expect = 0.003
Identities = 31/112 (27%), Positives = 51/112 (44%), Gaps = 19/112 (16%)
Query: 37 GERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQEEQ-EEEEKI 95
G+RP RF + + +P C+ + +F +L++ P V+ QE+ +++EKI
Sbjct: 68 GQRPLSAQTKARFSEAYRVPDTCDMTKLSTSFSHGLLTIEFPAIVEANKQEKAVQDQEKI 127
Query: 96 PELEDLDKYQEKNTYKSLGFG------GR----DREEEIGTLSEYTYRTDNK 137
Q N KS G G GR + E+++GT E T T N+
Sbjct: 128 G--------QRSNQEKSGGPGPNGSTLGRKKALEEEKQVGTSQEKTTPTLNE 171
>At1g76770 putative heat shock protein
Length = 244
Score = 38.1 bits (87), Expect = 0.003
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 44 TKWKRFKKEFELPKYCNEDAIRGNFMQN--ILSVVLPKKVD-----LIPQEEQEEEEKIP 96
T+ K FKK F +P D I+ F + L+V +PKKV I +E++EEE K P
Sbjct: 90 TEIKEFKKVFRIPDIVILDKIKARFNEEDGTLTVTMPKKVKGITGLKIEEEDEEEEMKEP 149
Query: 97 ELEDLDKYQEK 107
+E +K +EK
Sbjct: 150 IVE--EKTEEK 158
>At1g54400 hypothetical protein
Length = 153
Score = 38.1 bits (87), Expect = 0.003
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 37 GERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDL 83
G P D TK RF KE ++ K C + IR F + +L V +PK + +
Sbjct: 28 GGCPVDQTKTIRFMKETKVAKDCKRNEIRAKFSKGVLYVTMPKTIPI 74
>At1g76780 putative heat shock protein
Length = 1871
Score = 35.4 bits (80), Expect = 0.017
Identities = 22/65 (33%), Positives = 36/65 (54%), Gaps = 6/65 (9%)
Query: 49 FKKEFELPKYCNEDAIRGNFMQN--ILSVVLPKKVDLIP----QEEQEEEEKIPELEDLD 102
FKK F +P + D I+ F + L++ +PK+V I +EE+EEEE+ E D+
Sbjct: 18 FKKVFRIPDTVDLDKIKARFDDDDATLTITMPKRVKGISGFKIEEEEEEEEEEEERVDVS 77
Query: 103 KYQEK 107
+ + K
Sbjct: 78 EAEHK 82
>At3g01780 unknown protein
Length = 1192
Score = 32.7 bits (73), Expect = 0.11
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 72 ILSVVLPKKVDLIPQEEQEEEEKIPELEDLDKYQEKNTYKSLGFGGRD---REEEIGTLS 128
+L PKK I +E + EEE+ E ED D+ ++ K G + +E+E GT S
Sbjct: 1100 LLKAAQPKKTSKIEEESENEEEEEGEEEDDDEEVKEKKEKEEGKDKEEKKKKEKEKGTFS 1159
Query: 129 EYT 131
+ T
Sbjct: 1160 KLT 1162
>At5g40340 unknown protein
Length = 1008
Score = 31.6 bits (70), Expect = 0.25
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 36 NGERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQEEQEEEEKI 95
NGE+ D K E K NE + + + N +S +L K D+ +EE+EEEE+
Sbjct: 45 NGEKKSDVVVDVDEKNE----KNLNESGVIEDCVMNGVSSLLKLKEDVEEEEEEEEEEEE 100
Query: 96 PELEDLDKYQEKNTYKSLGFGGRDREEEIG 125
E + D+ +E+ + + EEE G
Sbjct: 101 EEEDGEDEEEEEEEEE------EEEEEEHG 124
>At5g59720 heat shock protein 18
Length = 161
Score = 31.2 bits (69), Expect = 0.33
Identities = 16/70 (22%), Positives = 32/70 (44%), Gaps = 7/70 (10%)
Query: 24 QDRDTIELHLPGNGERPFDGTKWKR-------FKKEFELPKYCNEDAIRGNFMQNILSVV 76
+D++ +++ + E KW R F + F LP+ + ++ +L+VV
Sbjct: 82 EDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVV 141
Query: 77 LPKKVDLIPQ 86
+PK + PQ
Sbjct: 142 VPKAPEKKPQ 151
>At1g20696 unknown protein
Length = 141
Score = 31.2 bits (69), Expect = 0.33
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 12 EDFDPVFKWRREQDRDTIELHLPGNGERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQN 71
EDF +K +++ + G G KWK + P D + + +N
Sbjct: 47 EDFRVTYKEEHPKNKSVAAVGKAG-------GEKWKSLSDSEKAPYVAKADKRKVEYEKN 99
Query: 72 ILSVVLPKKVDLIPQEEQEEEEKIPELEDLDKYQE 106
+ + KK++ P+E++E ++ + E+ D D ++
Sbjct: 100 MKAY--NKKLEEGPKEDEESDKSVSEVNDEDDAED 132
>At1g06460 heat shock protein-like
Length = 285
Score = 31.2 bits (69), Expect = 0.33
Identities = 13/31 (41%), Positives = 18/31 (57%)
Query: 49 FKKEFELPKYCNEDAIRGNFMQNILSVVLPK 79
FK + LP N+D + FM IL +V+PK
Sbjct: 254 FKVSWPLPSNVNKDNVSAEFMDGILRIVIPK 284
>At3g57230 MADS-box transcription factor (AGL16)
Length = 179
Score = 30.4 bits (67), Expect = 0.56
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 77 LPKKVDLIPQEEQEEEEKIPELEDLDKYQEKNTYKSLGFGGRDREEE 123
L KKV+L+ Q+ E EK+ E+E + K KN+ + G RD E
Sbjct: 105 LHKKVNLMHQQNMELHEKVSEVEGV-KIANKNSLLTNGLDMRDTSNE 150
>At1g53540 17.6 kDa heat shock protein (AA 1-156)
Length = 157
Score = 30.4 bits (67), Expect = 0.56
Identities = 21/86 (24%), Positives = 38/86 (43%), Gaps = 18/86 (20%)
Query: 24 QDRDTIELHLPGNGERPFDGTKWKR-------FKKEFELPKYCNEDAIRGNFMQNILSVV 76
+D + +++ + E KW R F + F LP+ + I+ + +LSV
Sbjct: 80 EDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVT 139
Query: 77 LPKKVDLIPQEEQEEEEKIPELEDLD 102
+PK +P EK PE++ +D
Sbjct: 140 VPK----VP-------EKKPEVKSID 154
>At4g21870 heat shock protein - like
Length = 134
Score = 30.0 bits (66), Expect = 0.73
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 47 KRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKV 81
K FK++F LP+ + I + +L+V++PK++
Sbjct: 78 KTFKRKFRLPESIDMIGISAGYEDGVLTVIVPKRI 112
>At1g20693 unknown protein
Length = 144
Score = 30.0 bits (66), Expect = 0.73
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 12 EDFDPVFKWRREQDRDTIELHLPGNGERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQN 71
EDF FK +++ + G KWK + P + + + +N
Sbjct: 50 EDFRETFKKENPKNKSVATVGKAA-------GDKWKSLSDSEKAPYVAKAEKRKVEYEKN 102
Query: 72 ILSVVLPKKVDLIPQEEQEEEEKIPELEDLDKYQE 106
I + KK++ P+E++E ++ + E+ D D ++
Sbjct: 103 IKAY--NKKLEEGPKEDEESDKSVSEVNDEDDAED 135
>At1g17690 unknown protein
Length = 754
Score = 30.0 bits (66), Expect = 0.73
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 84 IPQEEQEEEEKIPELEDLDKYQEKNTYKSLGFGGRDREEEIGTLSEYTYRTDNKFGENDV 143
+ + QE+ + E ED D Y+ L G+ + ++S ++ +K +V
Sbjct: 135 LTDDTQEDNDNQSEEEDPDDYETDEEVHELSTNGQSFVDASSSISAFSEHLSHKLSSEEV 194
Query: 144 ETTREVALKF 153
ET + KF
Sbjct: 195 ETLPKGKWKF 204
>At5g56030 HEAT SHOCK PROTEIN 81-2 (HSP81-2) (sp|P55737)
Length = 699
Score = 29.6 bits (65), Expect = 0.96
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 36 NGERPFDGTKWKRFKKEFELPKYCNEDAIR------GNFMQNILSVVLPKKVDLIPQEEQ 89
+GE GTK + KE +L +Y E ++ F+ +S+ + K ++ +++
Sbjct: 164 SGETLGRGTKMVLYLKEDQL-EYLEERRLKDLVKKHSEFISYPISLWIEKTIEKEISDDE 222
Query: 90 EEEEKIPE---LEDLDKYQEKNTYK 111
EEEEK E +E++D+ +EK K
Sbjct: 223 EEEEKKDEEGKVEEVDEEKEKEEKK 247
>At2g45120 putative C2H2-type zinc finger protein
Length = 314
Score = 29.6 bits (65), Expect = 0.96
Identities = 23/101 (22%), Positives = 48/101 (46%), Gaps = 2/101 (1%)
Query: 47 KRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQEEQEEEEKIPELEDLDKYQE 106
+R+K F + N A+ G+ ++L++ + V + + E+E EE+ +L D D E
Sbjct: 2 ERYKCRFCFKSFINGRALGGHMRSHMLTLSAERCV-ITGEAEEEVEERPSQLCDDDDDTE 60
Query: 107 KNTYKSLGFGGRDREEEIGTLSEYTYRTDNKFGENDVETTR 147
+ S G + + E+ + D+ E++ E++R
Sbjct: 61 SDASSSSGEFDNQKMNRLDDELEFDFAEDDDV-ESETESSR 100
>At1g20290 hypothetical protein
Length = 497
Score = 29.6 bits (65), Expect = 0.96
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 86 QEEQEEEEKIPELEDLDKYQEKNTYKSLGFGGRDREEEIGTLSEYTYRTDNKFGENDVET 145
+EE+EEEE+ E E+ ++ +E+ + + EEE E + + E + E
Sbjct: 417 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 476
Query: 146 TREVALKFMVV 156
E K+M+V
Sbjct: 477 EEEEEKKYMIV 487
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,661,854
Number of Sequences: 26719
Number of extensions: 228742
Number of successful extensions: 1285
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 132
length of query: 184
length of database: 11,318,596
effective HSP length: 93
effective length of query: 91
effective length of database: 8,833,729
effective search space: 803869339
effective search space used: 803869339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC126009.2