Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126009.2 + phase: 0 
         (184 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g04890 unknown protein                                              60  7e-10
At2g27140 unknown protein                                              55  2e-08
At5g20970 small heat shock protein -like                               52  1e-07
At3g10680 hypothetical protein                                         38  0.003
At1g76770 putative heat shock protein                                  38  0.003
At1g54400 hypothetical protein                                         38  0.003
At1g76780 putative heat shock protein                                  35  0.017
At3g01780 unknown protein                                              33  0.11
At5g40340 unknown protein                                              32  0.25
At5g59720 heat shock protein 18                                        31  0.33
At1g20696 unknown protein                                              31  0.33
At1g06460 heat shock protein-like                                      31  0.33
At3g57230 MADS-box transcription factor (AGL16)                        30  0.56
At1g53540 17.6 kDa heat shock protein (AA 1-156)                       30  0.56
At4g21870 heat shock protein - like                                    30  0.73
At1g20693 unknown protein                                              30  0.73
At1g17690 unknown protein                                              30  0.73
At5g56030 HEAT SHOCK PROTEIN 81-2 (HSP81-2) (sp|P55737)                30  0.96
At2g45120 putative C2H2-type zinc finger protein                       30  0.96
At1g20290 hypothetical protein                                         30  0.96

>At5g04890 unknown protein
          Length = 366

 Score = 60.1 bits (144), Expect = 7e-10
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 26/135 (19%)

Query: 11  YEDFDPVFKWRREQDRDTIELHLPG-------------------NGERPFDGTKWKRFKK 51
           YEDF P  +W+ + +   + + L G                    GERP    KW RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNE 75

Query: 52  EFELPKYCNEDAIRGNFMQNILSVVLPK----KVDLIPQEEQEEEEKIPELEDLDKYQEK 107
            F +P+ C  D I G+F  N+L++ +PK    KV  +P+  + E      LE   K +EK
Sbjct: 76  VFTVPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPETSRTE---AAALEKAAKLEEK 132

Query: 108 NTYKSLGFGGRDREE 122
              +      ++ EE
Sbjct: 133 RLLEESRRKEKEEEE 147


>At2g27140 unknown protein
          Length = 224

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 30/96 (31%), Positives = 48/96 (49%), Gaps = 19/96 (19%)

Query: 2   EHKHAHNRSYEDFDPVFKWRREQDRDTIELHLPG------------------NGERPFDG 43
           +H +A NR Y++F+P+  W+ EQ  + + ++LPG                   G+RP   
Sbjct: 6   DHANA-NRIYDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGA 64

Query: 44  TKWKRFKKEFELPKYCNEDAIRGNFMQNILSVVLPK 79
            KW RF+KEF +P   + D++   F    L V LP+
Sbjct: 65  NKWIRFRKEFPIPPNIDVDSVSAKFEGANLVVRLPR 100


>At5g20970 small heat shock protein -like
          Length = 249

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 18/96 (18%)

Query: 9   RSYEDFDPVFKWRREQDRDTIELHLPG------------------NGERPFDGTKWKRFK 50
           R Y++F+P  +W  E D + +   LPG                   GERP  G KW RF 
Sbjct: 8   RVYQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFH 67

Query: 51  KEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQ 86
           +E  +P   + D++   F  N L +  PK    IPQ
Sbjct: 68  QEIPVPLTVDIDSVSAMFKDNKLYIRHPKLKTEIPQ 103


>At3g10680 hypothetical protein
          Length = 490

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 31/112 (27%), Positives = 51/112 (44%), Gaps = 19/112 (16%)

Query: 37  GERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQEEQ-EEEEKI 95
           G+RP       RF + + +P  C+   +  +F   +L++  P  V+   QE+  +++EKI
Sbjct: 68  GQRPLSAQTKARFSEAYRVPDTCDMTKLSTSFSHGLLTIEFPAIVEANKQEKAVQDQEKI 127

Query: 96  PELEDLDKYQEKNTYKSLGFG------GR----DREEEIGTLSEYTYRTDNK 137
                    Q  N  KS G G      GR    + E+++GT  E T  T N+
Sbjct: 128 G--------QRSNQEKSGGPGPNGSTLGRKKALEEEKQVGTSQEKTTPTLNE 171


>At1g76770 putative heat shock protein
          Length = 244

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 44  TKWKRFKKEFELPKYCNEDAIRGNFMQN--ILSVVLPKKVD-----LIPQEEQEEEEKIP 96
           T+ K FKK F +P     D I+  F +    L+V +PKKV       I +E++EEE K P
Sbjct: 90  TEIKEFKKVFRIPDIVILDKIKARFNEEDGTLTVTMPKKVKGITGLKIEEEDEEEEMKEP 149

Query: 97  ELEDLDKYQEK 107
            +E  +K +EK
Sbjct: 150 IVE--EKTEEK 158


>At1g54400 hypothetical protein
          Length = 153

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 37 GERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDL 83
          G  P D TK  RF KE ++ K C  + IR  F + +L V +PK + +
Sbjct: 28 GGCPVDQTKTIRFMKETKVAKDCKRNEIRAKFSKGVLYVTMPKTIPI 74


>At1g76780 putative heat shock protein
          Length = 1871

 Score = 35.4 bits (80), Expect = 0.017
 Identities = 22/65 (33%), Positives = 36/65 (54%), Gaps = 6/65 (9%)

Query: 49  FKKEFELPKYCNEDAIRGNFMQN--ILSVVLPKKVDLIP----QEEQEEEEKIPELEDLD 102
           FKK F +P   + D I+  F  +   L++ +PK+V  I     +EE+EEEE+  E  D+ 
Sbjct: 18  FKKVFRIPDTVDLDKIKARFDDDDATLTITMPKRVKGISGFKIEEEEEEEEEEEERVDVS 77

Query: 103 KYQEK 107
           + + K
Sbjct: 78  EAEHK 82


>At3g01780 unknown protein
          Length = 1192

 Score = 32.7 bits (73), Expect = 0.11
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 72   ILSVVLPKKVDLIPQEEQEEEEKIPELEDLDKYQEKNTYKSLGFGGRD---REEEIGTLS 128
            +L    PKK   I +E + EEE+  E ED D+  ++   K  G    +   +E+E GT S
Sbjct: 1100 LLKAAQPKKTSKIEEESENEEEEEGEEEDDDEEVKEKKEKEEGKDKEEKKKKEKEKGTFS 1159

Query: 129  EYT 131
            + T
Sbjct: 1160 KLT 1162


>At5g40340 unknown protein
          Length = 1008

 Score = 31.6 bits (70), Expect = 0.25
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 36  NGERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQEEQEEEEKI 95
           NGE+  D       K E    K  NE  +  + + N +S +L  K D+  +EE+EEEE+ 
Sbjct: 45  NGEKKSDVVVDVDEKNE----KNLNESGVIEDCVMNGVSSLLKLKEDVEEEEEEEEEEEE 100

Query: 96  PELEDLDKYQEKNTYKSLGFGGRDREEEIG 125
            E +  D+ +E+   +       + EEE G
Sbjct: 101 EEEDGEDEEEEEEEEE------EEEEEEHG 124


>At5g59720 heat shock protein 18
          Length = 161

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 16/70 (22%), Positives = 32/70 (44%), Gaps = 7/70 (10%)

Query: 24  QDRDTIELHLPGNGERPFDGTKWKR-------FKKEFELPKYCNEDAIRGNFMQNILSVV 76
           +D++ +++    + E      KW R       F + F LP+    + ++      +L+VV
Sbjct: 82  EDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVV 141

Query: 77  LPKKVDLIPQ 86
           +PK  +  PQ
Sbjct: 142 VPKAPEKKPQ 151


>At1g20696 unknown protein
          Length = 141

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 12  EDFDPVFKWRREQDRDTIELHLPGNGERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQN 71
           EDF   +K    +++    +   G       G KWK      + P     D  +  + +N
Sbjct: 47  EDFRVTYKEEHPKNKSVAAVGKAG-------GEKWKSLSDSEKAPYVAKADKRKVEYEKN 99

Query: 72  ILSVVLPKKVDLIPQEEQEEEEKIPELEDLDKYQE 106
           + +    KK++  P+E++E ++ + E+ D D  ++
Sbjct: 100 MKAY--NKKLEEGPKEDEESDKSVSEVNDEDDAED 132


>At1g06460 heat shock protein-like
          Length = 285

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 13/31 (41%), Positives = 18/31 (57%)

Query: 49  FKKEFELPKYCNEDAIRGNFMQNILSVVLPK 79
           FK  + LP   N+D +   FM  IL +V+PK
Sbjct: 254 FKVSWPLPSNVNKDNVSAEFMDGILRIVIPK 284


>At3g57230 MADS-box transcription factor (AGL16)
          Length = 179

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 77  LPKKVDLIPQEEQEEEEKIPELEDLDKYQEKNTYKSLGFGGRDREEE 123
           L KKV+L+ Q+  E  EK+ E+E + K   KN+  + G   RD   E
Sbjct: 105 LHKKVNLMHQQNMELHEKVSEVEGV-KIANKNSLLTNGLDMRDTSNE 150


>At1g53540 17.6 kDa heat shock protein (AA 1-156)
          Length = 157

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 21/86 (24%), Positives = 38/86 (43%), Gaps = 18/86 (20%)

Query: 24  QDRDTIELHLPGNGERPFDGTKWKR-------FKKEFELPKYCNEDAIRGNFMQNILSVV 76
           +D + +++    + E      KW R       F + F LP+    + I+ +    +LSV 
Sbjct: 80  EDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVT 139

Query: 77  LPKKVDLIPQEEQEEEEKIPELEDLD 102
           +PK    +P       EK PE++ +D
Sbjct: 140 VPK----VP-------EKKPEVKSID 154


>At4g21870 heat shock protein - like
          Length = 134

 Score = 30.0 bits (66), Expect = 0.73
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 47  KRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKV 81
           K FK++F LP+  +   I   +   +L+V++PK++
Sbjct: 78  KTFKRKFRLPESIDMIGISAGYEDGVLTVIVPKRI 112


>At1g20693 unknown protein
          Length = 144

 Score = 30.0 bits (66), Expect = 0.73
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 12  EDFDPVFKWRREQDRDTIELHLPGNGERPFDGTKWKRFKKEFELPKYCNEDAIRGNFMQN 71
           EDF   FK    +++    +           G KWK      + P     +  +  + +N
Sbjct: 50  EDFRETFKKENPKNKSVATVGKAA-------GDKWKSLSDSEKAPYVAKAEKRKVEYEKN 102

Query: 72  ILSVVLPKKVDLIPQEEQEEEEKIPELEDLDKYQE 106
           I +    KK++  P+E++E ++ + E+ D D  ++
Sbjct: 103 IKAY--NKKLEEGPKEDEESDKSVSEVNDEDDAED 135


>At1g17690 unknown protein
          Length = 754

 Score = 30.0 bits (66), Expect = 0.73
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 84  IPQEEQEEEEKIPELEDLDKYQEKNTYKSLGFGGRDREEEIGTLSEYTYRTDNKFGENDV 143
           +  + QE+ +   E ED D Y+       L   G+   +   ++S ++    +K    +V
Sbjct: 135 LTDDTQEDNDNQSEEEDPDDYETDEEVHELSTNGQSFVDASSSISAFSEHLSHKLSSEEV 194

Query: 144 ETTREVALKF 153
           ET  +   KF
Sbjct: 195 ETLPKGKWKF 204


>At5g56030 HEAT SHOCK PROTEIN 81-2 (HSP81-2) (sp|P55737)
          Length = 699

 Score = 29.6 bits (65), Expect = 0.96
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 36  NGERPFDGTKWKRFKKEFELPKYCNEDAIR------GNFMQNILSVVLPKKVDLIPQEEQ 89
           +GE    GTK   + KE +L +Y  E  ++        F+   +S+ + K ++    +++
Sbjct: 164 SGETLGRGTKMVLYLKEDQL-EYLEERRLKDLVKKHSEFISYPISLWIEKTIEKEISDDE 222

Query: 90  EEEEKIPE---LEDLDKYQEKNTYK 111
           EEEEK  E   +E++D+ +EK   K
Sbjct: 223 EEEEKKDEEGKVEEVDEEKEKEEKK 247


>At2g45120 putative C2H2-type zinc finger protein
          Length = 314

 Score = 29.6 bits (65), Expect = 0.96
 Identities = 23/101 (22%), Positives = 48/101 (46%), Gaps = 2/101 (1%)

Query: 47  KRFKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQEEQEEEEKIPELEDLDKYQE 106
           +R+K  F    + N  A+ G+   ++L++   + V +  + E+E EE+  +L D D   E
Sbjct: 2   ERYKCRFCFKSFINGRALGGHMRSHMLTLSAERCV-ITGEAEEEVEERPSQLCDDDDDTE 60

Query: 107 KNTYKSLGFGGRDREEEIGTLSEYTYRTDNKFGENDVETTR 147
            +   S G     +   +    E+ +  D+   E++ E++R
Sbjct: 61  SDASSSSGEFDNQKMNRLDDELEFDFAEDDDV-ESETESSR 100


>At1g20290 hypothetical protein
          Length = 497

 Score = 29.6 bits (65), Expect = 0.96
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query: 86  QEEQEEEEKIPELEDLDKYQEKNTYKSLGFGGRDREEEIGTLSEYTYRTDNKFGENDVET 145
           +EE+EEEE+  E E+ ++ +E+   +       + EEE     E     + +  E + E 
Sbjct: 417 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 476

Query: 146 TREVALKFMVV 156
             E   K+M+V
Sbjct: 477 EEEEEKKYMIV 487


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.316    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,661,854
Number of Sequences: 26719
Number of extensions: 228742
Number of successful extensions: 1285
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 132
length of query: 184
length of database: 11,318,596
effective HSP length: 93
effective length of query: 91
effective length of database: 8,833,729
effective search space: 803869339
effective search space used: 803869339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)


Medicago: description of AC126009.2