BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125481.2 + phase: 0 /pseudo
(1546 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 334 2e-91
At1g37200 hypothetical protein 279 1e-74
At2g15410 putative retroelement pol polyprotein 273 6e-73
At2g14380 putative retroelement pol polyprotein 247 4e-65
At2g14400 putative retroelement pol polyprotein 215 2e-55
At4g03800 187 3e-47
At1g34080 putative protein 187 5e-47
At2g15100 putative retroelement pol polyprotein 170 7e-42
At2g13210 pseudogene 166 7e-41
At2g13330 F14O4.9 160 5e-39
At2g11940 putative retroelement gag/pol polyprotein 159 9e-39
At3g11970 hypothetical protein 131 3e-30
At1g36590 hypothetical protein 131 3e-30
At2g05610 putative retroelement pol polyprotein 127 5e-29
At1g35370 hypothetical protein 122 1e-27
At2g13230 pseudogene 121 3e-27
At1g37060 Athila retroelment ORF 1, putative 120 8e-27
At2g10780 pseudogene 117 4e-26
At2g07660 putative retroelement pol polyprotein 114 6e-25
At4g10580 putative reverse-transcriptase -like protein 113 7e-25
>At1g20390 hypothetical protein
Length = 1791
Score = 334 bits (857), Expect = 2e-91
Identities = 181/456 (39%), Positives = 267/456 (57%), Gaps = 32/456 (7%)
Query: 342 ISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQLQ 401
ISF+ D + +DPLVV + + + RVL+DTGSS ++++ D + M +++ Q++
Sbjct: 553 ISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIK 612
Query: 402 PFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINLL 461
P L+GF GD V G + L G ++++V P+ YN I+G P I+ +
Sbjct: 613 PVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAW----VKFVVIGKPAVYNVILGTPWIHQM 668
Query: 462 DAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPRED 521
A ST H +K+P NG + + +E S + + SE+ ++++D +
Sbjct: 669 QAIPSTYHQCVKFPTHNGIFTL-----RAPKEAKTPSR--SYEESELCRTEMVNIDESD- 720
Query: 522 YQQERIEPVEDLKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGI 581
P + + +G + + LI LL+ N+ FAWS DM GI
Sbjct: 721 --------------------PTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGI 760
Query: 582 DIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVL 641
D + H L ++P+ KPV QK+RK+G E+ +AV+EEV KL +A I E+KYP WLAN V+
Sbjct: 761 DPAITAHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVV 820
Query: 642 VKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDL 701
VKK +GKWR+CVDYTDLN ACPKD YPLP+ID L++ +G LSFMDA+S YNQ+ M
Sbjct: 821 VKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHK 880
Query: 702 LDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSA 761
D K F+T++ Y Y+VMSFGL+NAGAT+QR ++ + + QIGR +EVY+DD++VK+
Sbjct: 881 DDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLK 940
Query: 762 EGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHAENF 797
H E L + F + M+LNP KCTFGV + F
Sbjct: 941 PEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEF 976
Score = 150 bits (379), Expect = 6e-36
Identities = 86/255 (33%), Positives = 133/255 (51%), Gaps = 12/255 (4%)
Query: 1091 SDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAST 1150
+DSQL+ Q+SGEY+ K+ ++ YL V+ + F F++ +PR N AD LA LA T
Sbjct: 1276 TDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALALT 1335
Query: 1151 KRPGNNRTVIQEVVSAPNCE---AKEVLSTTQETEG--------WMAPILKYLTGSFDPV 1199
R + E + P+ + A E+++T + + W I YL+ P
Sbjct: 1336 SDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLPS 1395
Query: 1200 SEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRS 1259
+ + +R +AAK+T++ L K +L CL E ++ E HEG G+H GR+
Sbjct: 1396 DKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRA 1455
Query: 1260 LVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVDIV 1319
L KL + G+YWP M DC F KC++CQR + P L + +P+PF + +DIV
Sbjct: 1456 LALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIV 1515
Query: 1320 GPFPPAP*QLKFLIV 1334
GP PA Q +F++V
Sbjct: 1516 GPM-PASRQKRFILV 1529
Score = 54.3 bits (129), Expect = 5e-07
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 1485 VLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRRENF--NEEANEVGIQCTMDMI 1542
VLWSY TTP S T +TPF YG +AM P E+ + RR N E N+ + +D +
Sbjct: 1636 VLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELNDRMMLDRLDDL 1695
Query: 1543 DEIR 1546
+EIR
Sbjct: 1696 EEIR 1699
>At1g37200 hypothetical protein
Length = 1564
Score = 279 bits (713), Expect = 1e-74
Identities = 144/360 (40%), Positives = 228/360 (63%), Gaps = 22/360 (6%)
Query: 449 YNAIIGRPSINLLDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEI 508
+NAI+GRP ++ + A ST H +K+P + G + ++ G + +R Y S +L +K +E+
Sbjct: 532 FNAILGRPWLHAMKAVPSTYHQCIKFPSEKG-IAVIYGSQRSSRRCYMGSYEL-IKKAEL 589
Query: 509 LGVNLIDL----------DPREDYQQERIEPVEDLKDIMIG-TGPNQTIKIGTSLERAEE 557
+ + + D DP + Q+ + + I + P Q + +G L+ A
Sbjct: 590 VVLMIEDKLAEMKTVRSSDPSQCGPQK-----SSITQVYIDESDPKQCVGVGQDLDPAIR 644
Query: 558 KNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEE 617
++ I L+EN D FAWS +++ GI ++V H L ++P+ +P+ QK+RK+G E+ KAV +E
Sbjct: 645 EDFITFLKENKDSFAWSSANLQGISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVQDE 704
Query: 618 VRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLID 677
V +L + I E+KYP WLAN V+VK +GKWR+C+D+ DLN ACPKD +PLP+ID L+
Sbjct: 705 VDRLLKIGSIREVKYPDWLANPVVVKNKNGKWRVCIDFMDLNKACPKDSFPLPHIDRLVK 764
Query: 678 NAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMD 737
AG++ LSFMDA+S YNQ+ M D K F+T+ Y+VM FGL+N GAT+QR ++
Sbjct: 765 ATAGHELLSFMDAFSGYNQILMRPDDQEKTAFITD----CYKVMPFGLKNTGATYQRLVN 820
Query: 738 TIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHAENF 797
+F+ Q+G+ +E+Y+DD++VK++ E H L+E F+ + K M+LNP KC+FGV + F
Sbjct: 821 RMFADQLGKTMELYIDDMLVKSAHEKDHLPQLRECFKILNKFEMKLNPEKCSFGVPSGEF 880
Score = 131 bits (330), Expect = 3e-30
Identities = 83/279 (29%), Positives = 127/279 (44%), Gaps = 58/279 (20%)
Query: 1091 SDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAST 1150
SDSQL+T+Q GEY+ KD ++ YL V+ L F FE+ +PR +N D LA LAST
Sbjct: 1107 SDSQLVTSQFHGEYEAKDERMEAYLELVKTLTQQFESFELTRIPRGENTSTDALAALAST 1166
Query: 1151 KRPGNNRTVIQEVVSAPNCE--------------------------------AKEVLSTT 1178
P R + E + P+ + A E +
Sbjct: 1167 LDPFVKRIIPVEGIEHPSIDLTVKHAGMETSATCNFTRVTRSTTAAARALAAAAEAGAAE 1226
Query: 1179 QETE----------------GWMAPILKYLTGSFDPVSEEEKQLVRKRAAKFTIVAGKLY 1222
+E + W PI+ Y+ P + E + ++ ++A++ I+ G+L
Sbjct: 1227 EEAKLRTPEQLASYEPEPYNDWRIPIIDYIERGITPPDKWETRKLKAQSARYCIMEGRLM 1286
Query: 1223 KRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFV 1282
KR P + C ++TK ++ +HEG CGSH SGR+L +L DC
Sbjct: 1287 KRSVAGPYMVCTYGQQTKDLMKSMHEGQCGSHYSGRTLRCIML----------ADCIAHS 1336
Query: 1283 KKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVDIVGP 1321
+CDKCQR + P E++S+ SP+PF K +D+V P
Sbjct: 1337 LRCDKCQRHAPTLHQPPEEMSSISSPYPFMKWSMDVVRP 1375
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 273 bits (698), Expect = 6e-73
Identities = 126/256 (49%), Positives = 182/256 (70%)
Query: 542 PNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQ 601
P++ + I L + L+ L++NA FAWS DMPGID V CH L ++P+ KP+ Q
Sbjct: 726 PSRCVGIRIDLPSELQNELVNFLRQNAATFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQ 785
Query: 602 KKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMA 661
K+RK+G ++ K V+EEV+KL +A I E++YP WL N V+VKK +GKWR+C+D+TDLN A
Sbjct: 786 KRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKA 845
Query: 662 CPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVM 721
CPKD +PLP+ID L++ AG + LSFMDA+S YNQ+ M D K VF+T+Q Y Y+VM
Sbjct: 846 CPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQGTYCYKVM 905
Query: 722 SFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANM 781
FGL+NAGAT+ R ++ +F+ Q+ ++EVY+DD++VK+ +H L++ FQ + + NM
Sbjct: 906 PFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNM 965
Query: 782 RLNPAKCTFGVHAENF 797
+LNP+KCTFGV + F
Sbjct: 966 KLNPSKCTFGVTSGEF 981
Score = 107 bits (266), Expect = 7e-23
Identities = 54/159 (33%), Positives = 87/159 (53%), Gaps = 1/159 (0%)
Query: 1176 STTQETEGWMAPILKYLTGSFDPVSEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLG 1235
S + + W+ I Y+ P + + +R R+A++T+ L + LL CL
Sbjct: 1368 SDSPASTNWIEEIRSYIADRIVPKDKWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLD 1427
Query: 1236 EEETKLVLLEVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKK 1295
+EE + V+ E+HEG G+H GR+L K+ + G YWP M DC +FV +C+KCQ +
Sbjct: 1428 DEEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFI 1487
Query: 1296 TAPANELTSVFSPWPFHKSGVDIVGPFPPAP*QLKFLIV 1334
P+ L + P+PF + +DI+ PF PA Q K+++V
Sbjct: 1488 HIPSEVLQTAMPPYPFMRWAMDIIRPF-PASRQKKYILV 1525
Score = 65.9 bits (159), Expect = 2e-10
Identities = 33/89 (37%), Positives = 49/89 (54%)
Query: 1092 DSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTK 1151
DSQL+ +Q SG Y+ K+ ++ YL VR L+ F FE+ +PR N AD LA LAST
Sbjct: 1222 DSQLVASQFSGNYEAKNERMDAYLKVVRELSYNFEVFELTKIPRSDNAPADALAVLASTS 1281
Query: 1152 RPGNNRTVIQEVVSAPNCEAKEVLSTTQE 1180
P R + E + P+ + + ++ E
Sbjct: 1282 DPDLRRVIPVECIDVPSIKIQGTITKPSE 1310
Score = 50.4 bits (119), Expect = 8e-06
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 1485 VLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRRENF--NEEANEVGIQCTMDMI 1542
VLWSY TTP +T TPF++ YG +A+ P E PT RR + N+ + +D +
Sbjct: 1632 VLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLLDNLDTL 1691
Query: 1543 DEIR 1546
+E R
Sbjct: 1692 EEQR 1695
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 247 bits (630), Expect = 4e-65
Identities = 122/255 (47%), Positives = 175/255 (67%), Gaps = 11/255 (4%)
Query: 543 NQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQK 602
+Q IKI TS+ I+ ++ N +L DM GID +VACH L ++P+ K V QK
Sbjct: 453 HQCIKIPTSIG-------IETIRGNQNL----AHDMVGIDPEVACHELNVDPTFKLVKQK 501
Query: 603 KRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMAC 662
+RK+G E+ KAV++EV KL +A I E+KYP WLAN V+VKK + KWR+C+D+TDLN AC
Sbjct: 502 RRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWLANPVVVKKKNDKWRVCIDFTDLNKAC 561
Query: 663 PKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMS 722
PKD +PLP+ID +++ G + LSFMDA+S YNQ+ M D K F+ ++ Y Y+VM
Sbjct: 562 PKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPMHKDDQEKTSFIIDRGTYCYKVMP 621
Query: 723 FGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMR 782
FGL+N GA +QR ++ +F+ Q+G+ +EVY+DD++VK++ H + LK F+ + K NM+
Sbjct: 622 FGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDMLVKSTRSADHIDHLKACFETLNKYNMK 681
Query: 783 LNPAKCTFGVHAENF 797
LNPAKC FGV + F
Sbjct: 682 LNPAKCLFGVTSGEF 696
Score = 85.1 bits (209), Expect = 3e-16
Identities = 58/216 (26%), Positives = 107/216 (48%), Gaps = 7/216 (3%)
Query: 333 SDASEKISTISFSQEDFRQV-IPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFS 391
S A+++++ ++F+ ED V +PH+D PLV+ + E+ R+L+DTGSS NV++ D
Sbjct: 321 SPATKEMTPLTFTSEDLFGVDLPHND-PLVIELHIGESEVTRILIDTGSSVNVVFKDVLQ 379
Query: 392 KMGLSEEQLQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNA 451
KM + + ++P L+GF G+ + G + L G + +++V + P+ YN
Sbjct: 380 KMKVHDRHIKPSVRPLTGFDGNTMMTNGTIKLPIYLG----GAATWHKFVVVDKPTIYNI 435
Query: 452 IIGRPSINLLDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGV 511
I+G P I+ + A S+ H +K P G + +RG+ +A + ++ +
Sbjct: 436 ILGTPWIHDMQAIPSSYHQCIKIPTSIG-IETIRGNQNLAHDMVGIDPEVACHELNVDPT 494
Query: 512 NLIDLDPREDYQQERIEPVEDLKDIMIGTGPNQTIK 547
+ R ER + V D D ++ G +K
Sbjct: 495 FKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVK 530
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 215 bits (547), Expect = 2e-55
Identities = 100/195 (51%), Positives = 146/195 (74%)
Query: 603 KRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMAC 662
+RK+G E+ KAV++EV KL + I E++YP WLANTV+VKK +GK R+C+D+TDLN AC
Sbjct: 469 RRKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKAC 528
Query: 663 PKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMS 722
PKD +PLP+ID L+++ AG + LSFMDA+S YNQ+ M+ D K +F+T++ Y Y+VM
Sbjct: 529 PKDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMP 588
Query: 723 FGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMR 782
FGLRNAGAT+ R ++ +FS +G+ +EVY+DD+++K+ + H + L+E F + + M+
Sbjct: 589 FGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMK 648
Query: 783 LNPAKCTFGVHAENF 797
LNPAKCTFGV + F
Sbjct: 649 LNPAKCTFGVPSGEF 663
Score = 132 bits (331), Expect = 2e-30
Identities = 84/277 (30%), Positives = 138/277 (49%), Gaps = 37/277 (13%)
Query: 1095 LMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTKRPG 1154
++ NQ +G+Y+ KDS++ YL V++LA F FE+I +PR QN AD LA LAST P
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 1155 NNRTVIQEVVSAPNC-EAKEVLSTTQ---------ETEGWMAPILKYLTGSFD---PVSE 1201
N + E +S + E KE T+ +T + P+ + + P +
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPPVKRRKSKEATVPKPAVQ 909
Query: 1202 EEK--QLVRKRAAKFTIVA----------------------GKLYKRGTVTPLLRCLGEE 1237
E +L+ + + I A LY+RG P L +
Sbjct: 910 ENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLLSIFGP 969
Query: 1238 ETKLVLLEVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTA 1297
++V+ EVHEG+CGSH SGR++ K+ + YYWP M DC ++ ++C +CQ +
Sbjct: 970 VVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAPLIHQ 1029
Query: 1298 PANELTSVFSPWPFHKSGVDIVGPFPPAP*QLKFLIV 1334
P+ +S+ +P+PF + +DI+GP + +++L+V
Sbjct: 1030 PSELFSSISAPYPFMRWSMDIIGPLHRSTRGVQYLLV 1066
Score = 62.0 bits (149), Expect = 3e-09
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 1485 VLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWRREN--FNEEANEVGIQCTMDMI 1542
VLW+Y TTP +TGETPF++VYG A++P E++ P RR NE+ N + ++D I
Sbjct: 1131 VLWAYRTTPRRSTGETPFSLVYGMKAVVPAELNVPGLRRTEAPLNEKENSAMLDDSLDTI 1190
Query: 1543 DEIR 1546
+E R
Sbjct: 1191 NERR 1194
Score = 47.8 bits (112), Expect = 5e-05
Identities = 19/57 (33%), Positives = 38/57 (66%)
Query: 340 STISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLS 396
++I F +++ + + DD LVV+ + N+E+ R+L+DTGSS ++++ +MG+S
Sbjct: 407 TSILFDEKETQHLERSHDDALVVTLDVANFEVSRILIDTGSSVDLIFLSTLERMGIS 463
>At4g03800
Length = 637
Score = 187 bits (476), Expect = 3e-47
Identities = 93/220 (42%), Positives = 143/220 (64%), Gaps = 15/220 (6%)
Query: 578 MPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLA 637
MP ID + CH L ++P KP+ QK+RK+G E+ KAV+ ++ KL + I E++YP W+A
Sbjct: 321 MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380
Query: 638 NTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQM 697
TV+VKK +GK R+C+D+TDLN ACPKD +PLP+ID L+++ AG + L+FMDA+ YNQ+
Sbjct: 381 ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440
Query: 698 KMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVV 757
M+ D K F+T++ GAT+Q ++ +F+ + + +EV +DD +V
Sbjct: 441 MMNPEDQEKTSFITDR---------------GATYQWLVNKMFNEHLRKTMEVSIDDTLV 485
Query: 758 KTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHAENF 797
K+ + H + L E F+ + + M+LN AKCTFGV + F
Sbjct: 486 KSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEF 525
Score = 72.0 bits (175), Expect = 2e-12
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 19/154 (12%)
Query: 334 DASEKISTISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKM 393
+ + + S++SF +E+ R + DD L+++ + N++I R+LVDTGSS ++++
Sbjct: 177 EVNYQCSSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLIF------- 229
Query: 394 GLSEEQLQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQKSIKIRYLVFNAPSSYNAII 453
L P L FT + G + L G + S + ++VF+ P++YN I+
Sbjct: 230 ------LGP-PSPLVAFTSESAMSLGTIKLPVLAG----KMSKIVDFVVFDKPATYNIIL 278
Query: 454 GRPSINLLDAFVSTKHLMMKYPLDNGRVGIVRGD 487
G P I + A ST H +K+P NG V + GD
Sbjct: 279 GTPWIFQMKAVPSTYHQWLKFPTSNG-VETIWGD 311
>At1g34080 putative protein
Length = 811
Score = 187 bits (474), Expect = 5e-47
Identities = 125/411 (30%), Positives = 202/411 (48%), Gaps = 96/411 (23%)
Query: 356 DDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQLQPFKGTLSGFTGDRV 415
DDD LV+S + N E++R+L+DTGSS ++++ D +MG+S++ ++ L FT +
Sbjct: 473 DDDALVISLDVGNCEVQRILIDTGSSVDLIFLDTLVRMGISKKDIKGAPSPLVSFTIETS 532
Query: 416 HVRGYVTLKTTFGTRDQQKSIK-IRYLVFNAPSSYNAIIGRPSINLLDAFVSTKHLMMKY 474
G +TL T Q +K I + VF+ P++YN I+G P + + A ST
Sbjct: 533 MSLGTITLPVT-----AQGVVKMIEFTVFDRPAAYNIILGTPWLYEMKAVPST------- 580
Query: 475 PLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLIDLDPREDYQQERIEPVEDLK 534
YH +K + + +P + + +E V
Sbjct: 581 --------------------YHQCVKFPLPTRAAP-------NPFKKVGNDLVERV---- 609
Query: 535 DIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINP 594
++ P+Q + IG +LE M GI +V H L ++P
Sbjct: 610 -VINEEHPDQLVGIGANLE------------------------MTGISTEVISHDLNVDP 644
Query: 595 SVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVD 654
++KPV QK+RK+G ++ +AV+ EV +L +A I E+KYP WLAN V+VKK +GKWR+CVD
Sbjct: 645 TLKPVKQKRRKLGPDRAEAVNAEVVRLLKAGLIREVKYPEWLANPVVVKKKNGKWRVCVD 704
Query: 655 YTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQK 714
+TDLN ACPKD +PLP+ID L+++ + F +
Sbjct: 705 FTDLNKACPKDFFPLPHIDRLVESRKDF--------------------------FHYGTR 738
Query: 715 NYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLV-VKTSAEGQ 764
N + + + GAT+QR ++ +F +G+ +EVY+DD+ +TS + Q
Sbjct: 739 NILLQGHALRTKKWGATYQRLVNRMFKDFLGKTMEVYIDDMFHARTSLKSQ 789
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 170 bits (430), Expect = 7e-42
Identities = 80/151 (52%), Positives = 110/151 (71%)
Query: 578 MPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLA 637
M GI +V H L ++P+ KPV QK+RK+G ++ +AV+ EV +L E I E+KYP WLA
Sbjct: 412 MTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLA 471
Query: 638 NTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQM 697
N V+VKK +GKWR+CVD+TDLN AC KD +PLP+ID L+++ G++ LSFMDA+S YNQ+
Sbjct: 472 NPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQI 531
Query: 698 KMDLLDAPKIVFMTNQKNYHYEVMSFGLRNA 728
M+ D K F+T Y+Y+VM FGL+NA
Sbjct: 532 LMNPEDQEKTSFITECGTYYYKVMPFGLKNA 562
Score = 137 bits (344), Expect = 6e-32
Identities = 88/297 (29%), Positives = 137/297 (45%), Gaps = 57/297 (19%)
Query: 1080 LERWV*KTSDRSDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNV 1139
++ WV ++ + SD+ N+ SGEY+ KD+ + YL+ VR ++ F FE+ +PR +N
Sbjct: 774 IKTWV-RSRNLSDAPT-ANRYSGEYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENS 831
Query: 1140 RADLLAKLASTKRPGNNRTVIQEVVSAPNC------------------------------ 1169
A+ LA LAST R + E +S P+
Sbjct: 832 AANALAALASTFEVTLPRVIPVETISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLG 891
Query: 1170 EAKEVLSTTQETE-------------------------GWMAPILKYLTGSFDPVSEEEK 1204
+ +E+ TE W PI Y+ P +
Sbjct: 892 DDEEISDAVHPTEIVENQSLPDNHNAPLPDQPPHDWGADWREPIRDYILNGTLPAEKWAA 951
Query: 1205 QLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKL 1264
+ ++ A+F I LY+R P C+ E+T+ V+ EVH+G CG+H GRSL K+
Sbjct: 952 RKLKATCARFCIANDILYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKV 1011
Query: 1265 LRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVDIVGP 1321
+ GYYWP + DC + +KC++CQ+ + PA LT+V +P+PF K +DIVGP
Sbjct: 1012 RKYGYYWPTLVADCEAYARKCEQCQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGP 1068
Score = 55.5 bits (132), Expect = 2e-07
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 1485 VLWSYHTTPHSTTGETPFTMVYGADAMLPVEIDTPTWR--RENFNEEANEVGIQCTMDMI 1542
VLW+ TTP T ETPF+++YG +A++P EI P+ R R NE N I +D I
Sbjct: 1174 VLWAVRTTPRRATDETPFSLIYGMEAVIPAEIKVPSARRIRNPQNETENNEMIIDVIDTI 1233
Query: 1543 DEIR 1546
DE R
Sbjct: 1234 DERR 1237
Score = 35.0 bits (79), Expect = 0.34
Identities = 14/44 (31%), Positives = 26/44 (58%)
Query: 438 IRYLVFNAPSSYNAIIGRPSINLLDAFVSTKHLMMKYPLDNGRV 481
+ + VF+ P++YN I+G P + + ST H +K+P G++
Sbjct: 369 VEFTVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKFPTPVGKM 412
>At2g13210 pseudogene
Length = 152
Score = 166 bits (421), Expect = 7e-41
Identities = 72/143 (50%), Positives = 102/143 (70%)
Query: 571 FAWSPSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEI 630
F WSP D+PG+ +++ H L ++P+ KPV QK+RK+G E+ +AV EV KL I++
Sbjct: 6 FVWSPEDLPGVSVEIVAHELNVDPTFKPVKQKRRKLGRERAEAVKAEVEKLLRIGSITKA 65
Query: 631 KYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDA 690
KYP WLAN V+VKK +GKWR+C+D+TDLN ACPKD +P+ +I L+++ +G K LSFMDA
Sbjct: 66 KYPEWLANPVVVKKKNGKWRVCIDFTDLNKACPKDSFPMSHIGRLVESTSGDKLLSFMDA 125
Query: 691 YSDYNQMKMDLLDAPKIVFMTNQ 713
++ YNQ+ M+ D K F T Q
Sbjct: 126 FAGYNQIMMNSEDQEKTTFYTEQ 148
>At2g13330 F14O4.9
Length = 889
Score = 160 bits (405), Expect = 5e-39
Identities = 71/154 (46%), Positives = 108/154 (70%)
Query: 644 KSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLD 703
+ +GKWR+C+D+ DLN ACPKD +PLP+ID L++ ++ LSFMDA+ YNQ+ M
Sbjct: 289 EKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDG 348
Query: 704 APKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEG 763
K F+T++ Y+Y+VM FGL+NAG T+QR ++ +F Q+G+ +EVY+DD++VK++ E
Sbjct: 349 QEKTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEK 408
Query: 764 QHSEDLKEIFQQVRKANMRLNPAKCTFGVHAENF 797
H L+E F+ + K M+LNP KC+F V + F
Sbjct: 409 DHVPQLRECFKILIKFEMKLNPEKCSFEVQSREF 442
Score = 110 bits (275), Expect = 6e-24
Identities = 76/255 (29%), Positives = 135/255 (52%), Gaps = 24/255 (9%)
Query: 342 ISFSQEDFRQVIPHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLSEEQLQ 401
I+F + + + DD LV+ + N+E+ ++VDTGSS +VL+YDAF + G + +LQ
Sbjct: 47 ITFWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSKLQ 106
Query: 402 PFKGTLSGFTGDRVHVRGYVTLKT-TFGTRDQQKSIKIRYLVFNAPSSYNAIIGRPSINL 460
K L+GF GD G + L T G R +LV + + +NAI+GRP +++
Sbjct: 107 GRKTPLTGFAGDTTFSIGTIQLPTIARGVRQ-----LTNFLVVDKKAPFNAILGRPWLHV 161
Query: 461 LDAFVSTKHLMMKYPLDNGRVGIVRGD*KIAREYYHASLKLNVKSSEILGVNLID----- 515
+ A ST H +K+P G + +V G + +R+ Y S + ++K ++ + + + D
Sbjct: 162 MKAVPSTYHQCIKFPSYKG-IAVVYGSQRSSRKCYMGSYE-DIKKADPVVLMIEDELAEM 219
Query: 516 -----LDPREDYQQERIEPVEDLKDIMIG-TGPNQTIKIGTSLERAEEKNLIQLLQENAD 569
LDP + ++ + + + I + P + + IG L+ ++LI L+EN D
Sbjct: 220 KTVRSLDPSQRGTRKSL-----ITQVCIDESDPKRCVGIGHDLDLTVREDLITFLKENKD 274
Query: 570 LFAWSPSDMPGIDIK 584
FAWS +++ GI ++
Sbjct: 275 SFAWSSANLQGISLE 289
Score = 63.9 bits (154), Expect = 7e-10
Identities = 32/69 (46%), Positives = 43/69 (61%)
Query: 1091 SDSQLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLAST 1150
SDSQL+T+Q GEY+ KD ++ YL V+ LA F F++ +PR +N AD LA LAST
Sbjct: 709 SDSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALAST 768
Query: 1151 KRPGNNRTV 1159
P R +
Sbjct: 769 SDPFVKRII 777
>At2g11940 putative retroelement gag/pol polyprotein
Length = 1212
Score = 159 bits (403), Expect = 9e-39
Identities = 85/243 (34%), Positives = 134/243 (54%), Gaps = 40/243 (16%)
Query: 558 KNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEE 617
+ LIQ L++N FAW+ +M GI +V H L ++P+ KPV QK++K G ++ +AV+ +
Sbjct: 362 RELIQFLEKNKSTFAWTIREMTGISTEVISHELNVDPTFKPVKQKRQKHGPDRAEAVNVK 421
Query: 618 VRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLID 677
V +L +A D +PLP+ID I+
Sbjct: 422 VVRLLKA----------------------------------------DCFPLPHIDRPIE 441
Query: 678 NAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMD 737
+ G + LSFMDA+S YNQ+ M+ D K F+T + Y+Y+VM FGL+N GAT+Q ++
Sbjct: 442 STTGQEMLSFMDAFSGYNQIMMNPDDQEKTSFITERGTYYYKVMPFGLKNVGATYQLLVN 501
Query: 738 TIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHAENF 797
+F +G+ +EVY+DD++VKT+ H + ++ F + + M+LNP KCTF V + F
Sbjct: 502 IMFKDLLGKTMEVYIDDMLVKTAFSASHLDHFQQCFDILNEFGMKLNPLKCTFAVPSREF 561
Query: 798 WVF 800
F
Sbjct: 562 LGF 564
Score = 127 bits (318), Expect = 7e-29
Identities = 83/279 (29%), Positives = 123/279 (43%), Gaps = 57/279 (20%)
Query: 1101 SGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTKRPGNNRTVI 1160
SG+Y+ KD+++ YL +R LA F FE+I VPR +N AD LA LAST R +
Sbjct: 747 SGDYEAKDNRMEAYLDLLRELAEKFEKFELIKVPRAENSAADALAALASTPEITVRRIIS 806
Query: 1161 QEVVSAPNCEAKEVLSTTQ-----------------------------------ETE--- 1182
E ++ PN +E+ T+ TE
Sbjct: 807 VETIAQPNIRIEEINFVTRAMRRQLEVQANNPELQQLHDEDEIPEAVPLVADEDSTEYNL 866
Query: 1183 ------GWMAPILKYLTGSFDPVSEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGE 1236
W PI Y+ P + E + ++ A+F + LY+R P C+
Sbjct: 867 PHDWGADWREPIRNYIFNGVLPTDKWEARKLKATCARFCLADDILYRRIISAPDAICIFG 926
Query: 1237 EETKLVLLEVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKT 1296
E+T+ V+ E+H+G CG+H GRSL KL + GY+WP M DC + + + F
Sbjct: 927 EQTRTVIKEIHDGTCGNHSGGRSLAFKLKKYGYFWPTMVADCEAYAHRSRRTFHFG---- 982
Query: 1297 APANELTSVFSPWPFHKSGVDIVGPFPPAP*QLKFLIVE 1335
SP PF K +DIVGP + ++FL++E
Sbjct: 983 ---------ISPLPFMKWSMDIVGPLHVSTRGVRFLLLE 1012
Score = 37.7 bits (86), Expect = 0.052
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 38/182 (20%)
Query: 354 PHDDDPLVVSFQLLNWEIKRVLVDTGSSANVLYYDAFSKMGLS---------EEQLQPFK 404
PHDD V++ + N +++RVL+ TGSS ++++ D + +G + E+ F
Sbjct: 318 PHDD-AFVITLDIANCKVQRVLIVTGSSVDLIFLDTLANLGQNFRRELIQFLEKNKSTFA 376
Query: 405 GTLSGFTGDRVHVRGY-VTLKTTFGTRDQQK-----------SIKIRYLV----FNAP-- 446
T+ TG V + + + TF Q++ ++K+ L+ F P
Sbjct: 377 WTIREMTGISTEVISHELNVDPTFKPVKQKRQKHGPDRAEAVNVKVVRLLKADCFPLPHI 436
Query: 447 -SSYNAIIGRPSINLLDAFVSTKHLMMKYPLDNGRVGIV--RGD*KIAREYYHASLKLNV 503
+ G+ ++ +DAF +MM P D + + RG YY+ + +
Sbjct: 437 DRPIESTTGQEMLSFMDAFSGYNQIMMN-PDDQEKTSFITERG------TYYYKVMPFGL 489
Query: 504 KS 505
K+
Sbjct: 490 KN 491
>At3g11970 hypothetical protein
Length = 1499
Score = 131 bits (329), Expect = 3e-30
Identities = 117/423 (27%), Positives = 202/423 (47%), Gaps = 35/423 (8%)
Query: 374 VLVDTGSSANVLYYDAFSKMGLSEEQLQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQ 433
+L+D+GS+ N L + +K+G + + +++ G ++ V G VT F + Q
Sbjct: 403 ILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVAD--GRKLRVEGKVT---DFSWKLQT 457
Query: 434 KSIKIRYLVFNAPSSYNAIIGRPSINLLDAFV-STKHLMMKYPLDNGRV---GIVRGD*K 489
+ + L+ + ++G + L K L M++ +N +V G+ G
Sbjct: 458 TTFQSDILLIPL-QGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGLTSGS-- 514
Query: 490 IAREYYHASLKLNVKSSEILGVNLIDLDPREDYQQERIEPVEDLKDIMIGTGPNQTIKIG 549
RE VK+ ++ + +ED Q + V+++ + G TI
Sbjct: 515 -VRE---------VKAQKLQKL-------QEDQVQLAMLCVQEVSEST--EGELCTINAL 555
Query: 550 TSLERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEE 609
TS E EE + ++L E D+F P+ +P K H + + PV Q+ +
Sbjct: 556 TS-ELGEESVVEEVLNEYPDIFI-EPTALPPFREKHN-HKIKLLEGSNPVNQRPYRYSIH 612
Query: 610 KRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPL 669
++ +D+ V L + P + + VLVKK G WR+CVDY +LN KD +P+
Sbjct: 613 QKNEIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPI 671
Query: 670 PNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAG 729
P I+ L+D G S +D + Y+Q++MD D K F T+ ++ Y VM FGL NA
Sbjct: 672 PLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAP 731
Query: 730 ATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCT 789
ATFQ M+ IF + + + V+ DD++V +S+ +H + LK++F+ +R + +KC
Sbjct: 732 ATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCA 791
Query: 790 FGV 792
F V
Sbjct: 792 FAV 794
Score = 39.7 bits (91), Expect = 0.014
Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 30/175 (17%)
Query: 1128 FEVIYVPREQNVRADLLAKLASTKRPGNNRTVIQEVVSAPNCEAKEVLSTTQETEGWMAP 1187
+E+ Y ++NV AD L+++ ++ V+ ++ C+ + + + +
Sbjct: 992 YEIQYRQGKENVVADALSRVEGSE-------VLHMAMTVVECDLLKDIQAGYANDSQLQD 1044
Query: 1188 ILKYLTGSFDPVSEEE---KQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLL 1244
I+ L DP S++ Q + +R +K + A K +LL
Sbjct: 1045 IITALQR--DPDSKKYFSWSQNILRRKSKIVVPANDNIKN----------------TILL 1086
Query: 1245 EVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRF-SDKKTAP 1298
+H G H SGR + + ++ +YW M +D +++ C CQ+ SD +P
Sbjct: 1087 WLHGSGVGGH-SGRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASP 1140
>At1g36590 hypothetical protein
Length = 1499
Score = 131 bits (329), Expect = 3e-30
Identities = 117/423 (27%), Positives = 202/423 (47%), Gaps = 35/423 (8%)
Query: 374 VLVDTGSSANVLYYDAFSKMGLSEEQLQPFKGTLSGFTGDRVHVRGYVTLKTTFGTRDQQ 433
+L+D+GS+ N L + +K+G + + +++ G ++ V G VT F + Q
Sbjct: 403 ILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVAD--GRKLRVEGKVT---DFSWKLQT 457
Query: 434 KSIKIRYLVFNAPSSYNAIIGRPSINLLDAFV-STKHLMMKYPLDNGRV---GIVRGD*K 489
+ + L+ + ++G + L K L M++ +N +V G+ G
Sbjct: 458 TTFQSDILLIPL-QGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGLTSGS-- 514
Query: 490 IAREYYHASLKLNVKSSEILGVNLIDLDPREDYQQERIEPVEDLKDIMIGTGPNQTIKIG 549
RE VK+ ++ + +ED Q + V+++ + G TI
Sbjct: 515 -VRE---------VKAQKLQKL-------QEDQVQLAMLCVQEVSEST--EGELCTINAL 555
Query: 550 TSLERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEE 609
TS E EE + ++L E D+F P+ +P K H + + PV Q+ +
Sbjct: 556 TS-ELGEESVVEEVLNEYPDIFI-EPTALPPFREKHN-HKIKLLEGSNPVNQRPYRYSIH 612
Query: 610 KRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPL 669
++ +D+ V L + P + + VLVKK G WR+CVDY +LN KD +P+
Sbjct: 613 QKNEIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPI 671
Query: 670 PNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAG 729
P I+ L+D G S +D + Y+Q++MD D K F T+ ++ Y VM FGL NA
Sbjct: 672 PLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAP 731
Query: 730 ATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCT 789
ATFQ M+ IF + + + V+ DD++V +S+ +H + LK++F+ +R + +KC
Sbjct: 732 ATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCA 791
Query: 790 FGV 792
F V
Sbjct: 792 FAV 794
Score = 34.3 bits (77), Expect = 0.58
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 30/175 (17%)
Query: 1128 FEVIYVPREQNVRADLLAKLASTKRPGNNRTVIQEVVSAPNCEAKEVLSTTQETEGWMAP 1187
+E+ Y ++NV AD L+++ ++ V+ ++ C+ + + + +
Sbjct: 992 YEIQYRQGKENVVADALSRVEGSE-------VLHMAMTVVECDLLKDIQAGYANDSQLQD 1044
Query: 1188 ILKYLTGSFDPVSEEE---KQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLL 1244
I+ L DP S++ Q + +R +K + A K +LL
Sbjct: 1045 IITALQR--DPDSKKYFSWSQNILRRKSKIVVPANDNIKN----------------TILL 1086
Query: 1245 EVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRF-SDKKTAP 1298
+H G H SGR + + ++ +Y M +D +++ C CQ+ SD +P
Sbjct: 1087 WLHGSGVGGH-SGRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASP 1140
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 127 bits (319), Expect = 5e-29
Identities = 74/237 (31%), Positives = 128/237 (53%), Gaps = 3/237 (1%)
Query: 556 EEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVD 615
EE + +++ E D+F P+D+P H + + PV Q+ + ++ +D
Sbjct: 3 EESFVEKVVTEFPDIFV-EPTDLPPFRAPHD-HKIELLEDSNPVNQRPYRYVVHQKNEID 60
Query: 616 EEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHL 675
+ V + + I P + + VLVKK G WR+CVDY +LN KD +P+P I+ L
Sbjct: 61 KIVDDMLASGTIQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDL 119
Query: 676 IDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRS 735
+D G S +D + Y+Q++MD LD K F T+ +Y Y VM FGL NA A+FQ
Sbjct: 120 MDELGGSNVYSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSL 179
Query: 736 MDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGV 792
M++ F + + + V+ DD+++ +++ +H + L+ +F+ +R ++ +KC F V
Sbjct: 180 MNSFFKPFLRKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAV 236
Score = 39.7 bits (91), Expect = 0.014
Identities = 38/173 (21%), Positives = 71/173 (40%), Gaps = 26/173 (15%)
Query: 1128 FEVIYVPREQNVRADLLAKLASTKRPGNNRTVIQEVVSAPNCEAKEVLSTTQETEGWMAP 1187
+E+ Y ++N+ AD L+++ ++ V+ +S C+ + + T+G +
Sbjct: 383 YEIQYKQGKENLVADALSRVEGSE-------VLHMALSVVECDLLKEIQAGYVTDGDIQG 435
Query: 1188 ILKYLTGSFDPVSEEE-KQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEV 1246
I+ L D Q V +R K +V + T+ L C G
Sbjct: 436 IITILQQQADSKKHYTWSQGVLRRKNKI-VVPNNSGIKDTILRWLHCSG----------- 483
Query: 1247 HEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRF-SDKKTAP 1298
G H SG+ + + ++ +YW M +D F++ C CQ+ SD +P
Sbjct: 484 ----MGGH-SGKEVTHQRVKGLFYWKSMVKDIQAFIRSCGTCQQCKSDNAASP 531
>At1g35370 hypothetical protein
Length = 1447
Score = 122 bits (307), Expect = 1e-27
Identities = 73/222 (32%), Positives = 125/222 (55%), Gaps = 3/222 (1%)
Query: 556 EEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVD 615
EE + +++E D+FA P+D+P K H + + PV Q+ + ++ +D
Sbjct: 540 EESVVQNIVEEFPDVFA-EPTDLPPFREKHD-HKIKLLEGANPVNQRPYRYVVHQKDEID 597
Query: 616 EEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHL 675
+ V+ + ++ I P + + VLVKK G WR+CVDYT+LN KD + +P I+ L
Sbjct: 598 KIVQDMIKSGTIQVSSSP-FASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDL 656
Query: 676 IDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRS 735
+D G S +D + Y+Q++MD D K F T+ ++ Y VM FGL NA ATFQ
Sbjct: 657 MDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSL 716
Query: 736 MDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVR 777
M+++F + + + V+ DD+++ +S+ +H E L+ +F+ +R
Sbjct: 717 MNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMR 758
Score = 35.4 bits (80), Expect = 0.26
Identities = 34/171 (19%), Positives = 68/171 (38%), Gaps = 25/171 (14%)
Query: 1128 FEVIYVPREQNVRADLLAKLASTKRPGNNRTVIQEVVSAPNCEAKEVLSTTQETEGWMAP 1187
+E+ Y ++N+ AD L+++ ++ V+ +S C+ + + E++G +
Sbjct: 963 YEIQYRQGKENLVADALSRVEGSE-------VLHMALSIVECDFLKEIQVAYESDGVLKD 1015
Query: 1188 ILKYLTGSFDPVSEEE-KQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEV 1246
I+ L D Q + +R +K + E T +L +
Sbjct: 1016 IISALQQHPDAKKHYSWSQDILRRKSKIVVPNDV----------------EITNKLLQWL 1059
Query: 1247 HEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTA 1297
H G SGR + +++ +YW M +D F++ C CQ+ A
Sbjct: 1060 HCSGMGGR-SGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAA 1109
>At2g13230 pseudogene
Length = 353
Score = 121 bits (304), Expect = 3e-27
Identities = 73/229 (31%), Positives = 118/229 (50%), Gaps = 25/229 (10%)
Query: 1111 LSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTKRPGNNRTVIQEVVSAPNCE 1170
+ YL+ V++ A F+ F++ +PR +N AD LA LAST R + E + P+ E
Sbjct: 1 MEAYLALVQDHAKQFHEFKLTRIPRGENTSADALAALASTSDLNMRRVIPVEFIEKPSIE 60
Query: 1171 AKEV--------------LSTTQETEG----WMAPILKYLTGSFDPVSEEEKQLVRKRAA 1212
+V S + G W+ PI +++ + + E + ++ AA
Sbjct: 61 LDKVEHAFPIQVVAGYEDASDNSPSLGCDSEWIEPIRNFISKRKVRLDKWEARKLKAEAA 120
Query: 1213 KFTIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKLLRAGYYWP 1272
+F +V KL+K PL+ C+ +E + V+ EVH G CG++ GR+L K+ R GY+WP
Sbjct: 121 RFVLVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIKIKRLGYFWP 180
Query: 1273 RMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVDIVGP 1321
M +K C+KCQR + PA L+S+ SP+P + +DI+GP
Sbjct: 181 TM-------IKDCEKCQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGP 222
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 120 bits (300), Expect = 8e-27
Identities = 78/278 (28%), Positives = 129/278 (46%), Gaps = 18/278 (6%)
Query: 533 LKDIMIGTGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAI 592
L+ + +G + + L + LI L + +S D+ GI + H + +
Sbjct: 834 LRYVFLGLNSTYPVIVNDELTADQVNLLITELMKYRKAIGYSLDDIKGISPTLCTHRIHL 893
Query: 593 NPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKW--- 649
++ +R++ ++ V +E+ KL +A I I TW++ V K G
Sbjct: 894 ENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKGGMTVVK 953
Query: 650 ---------------RMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDY 694
RMC++Y LN+A K+ +PLP IDH+++ A + F+D+YS +
Sbjct: 954 NSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFLDSYSGF 1013
Query: 695 NQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDD 754
Q+ + D K F + Y+ M FGL NA ATFQR M +IFS I +EV++DD
Sbjct: 1014 FQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDD 1073
Query: 755 LVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGV 792
V S+ +L + ++ + N+ LN KC F V
Sbjct: 1074 FSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMV 1111
Score = 62.8 bits (151), Expect = 2e-09
Identities = 44/169 (26%), Positives = 71/169 (41%), Gaps = 38/169 (22%)
Query: 1165 SAPNCEAKEVLSTTQETEGWMAPILKYLTGSFDP--VSEEEKQLVRKRAAKF-------- 1214
S P + + ++ W A + YL +P +S EK+ K F
Sbjct: 1316 SMPEEQLMAIQQLNEKKLPWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLY 1375
Query: 1215 TIVAGKLYKRGTVTPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKLLRAGYYWPRM 1274
T+ K+Y+ C+ E+E + +LL H G H + ++K+L+AG++WP M
Sbjct: 1376 TLCKDKIYRT--------CVSEDEIEGILLHCHGFAYGGHFATFKTMSKILQAGFWWPSM 1427
Query: 1275 TQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVDIVGPFP 1323
+D EF+ KCD + F W G+D +GPFP
Sbjct: 1428 FKDAQEFISKCDSFEN---------------FDVW-----GIDFMGPFP 1456
Score = 36.2 bits (82), Expect = 0.15
Identities = 14/32 (43%), Positives = 20/32 (61%)
Query: 1486 LWSYHTTPHSTTGETPFTMVYGADAMLPVEID 1517
LW+Y T + G TPF ++YG LPVE++
Sbjct: 1566 LWAYRTAFKTPIGTTPFNLLYGKSCHLPVELE 1597
>At2g10780 pseudogene
Length = 1611
Score = 117 bits (294), Expect = 4e-26
Identities = 69/253 (27%), Positives = 126/253 (49%), Gaps = 8/253 (3%)
Query: 545 TIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQKKR 604
T ++G S E + I ++ E +D+FA P + + P P+ +
Sbjct: 613 TKEVGASAELKD----IPIVNEFSDVFAAVSGVPPDRSDPFT---IELEPGTTPISKAPY 665
Query: 605 KMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPK 664
+M + + +++ +L + FI P W A + VKK G +R+C+DY LN K
Sbjct: 666 RMAPAEMAKLKKQLEELLDKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVK 724
Query: 665 DPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFG 724
+ YPLP ID L+D G + S +D S Y+Q+ ++ D K F T ++ + VM FG
Sbjct: 725 NKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFG 784
Query: 725 LRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLN 784
L NA A F + M+ +F + + ++++D++V + + H E L+ + +++R+ +
Sbjct: 785 LTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAK 844
Query: 785 PAKCTFGVHAENF 797
+KC+F + F
Sbjct: 845 LSKCSFWQRSVGF 857
Score = 38.9 bits (89), Expect = 0.023
Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 15/236 (6%)
Query: 1094 QLMTNQISGEYQTKDSQLSKYLSSVRNLAAFFNFFEVIYVPREQNVRADLLAKLASTKRP 1153
Q+ T+ S +Y +L+ L A +N ++ Y P + N AD L++ S
Sbjct: 1018 QIYTDHKSLKYIFTQPELNLRQRRWMELVADYNL-DIAYHPGKANQVADALSRRRSEVEA 1076
Query: 1154 GNNRTVIQEVVSAPNCEAKEVLSTTQETEGWMAPILKYLTGSFDPVSEEEKQLV----RK 1209
++ + ++ + A LS E G A L E ++++
Sbjct: 1077 ERSQVDLVNMMGTLHVNA---LSKEVEPLGLGAADQADLLSRIRLAQERDEEIKGWAQNN 1133
Query: 1210 RAAKFTIVAGKLYKRGTV-TPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKLLRAG 1268
+ T G + G V P R L EE +L E H+ H G + + + L+
Sbjct: 1134 KTEYQTSNNGTIVVNGRVCVPNDRALKEE----ILREAHQSKFSIH-PGSNKMYRDLKRY 1188
Query: 1269 YYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSP-WPFHKSGVDIVGPFP 1323
Y+W M +D +V KC CQ + P+ L ++ P W + +D V P
Sbjct: 1189 YHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLP 1244
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 114 bits (284), Expect = 6e-25
Identities = 69/253 (27%), Positives = 124/253 (48%), Gaps = 8/253 (3%)
Query: 545 TIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQKKR 604
T ++G S E + I ++ E +D+FA P + + P P+ +
Sbjct: 108 TKEVGASAELKD----ILIVNEFSDVFAAVSGVPPDRSDPFT---IELEPGTTPISKAPY 160
Query: 605 KMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPK 664
+M + + +++ +L FI P W A + VKK G +R+C+DY LN K
Sbjct: 161 RMAPAEMAELKKQLEELLAKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVK 219
Query: 665 DPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFG 724
+ YPLP ID L+D G + S +D S Y+Q+ ++ D K F T ++ + VM FG
Sbjct: 220 NKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFG 279
Query: 725 LRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLN 784
L NA A F + M+ +F + + +++DD++V + + H E L+ + +++R+ +
Sbjct: 280 LTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAK 339
Query: 785 PAKCTFGVHAENF 797
+K +F + F
Sbjct: 340 LSKFSFWQRSVGF 352
Score = 37.4 bits (85), Expect = 0.068
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 1219 GKLYKRGTV-TPLLRCLGEEETKLVLLEVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQD 1277
G + G V P R L EE +L E H+ H G + + + L+ Y+W M +D
Sbjct: 535 GTIVVNGRVCVPNDRALKEE----ILREAHQSKFSIH-PGSNKMYRDLKRYYHWVGMRKD 589
Query: 1278 CCEFVKKCDKCQRFSDKKTAPANELTSV-FSPWPFHKSGVDIVGPFP 1323
+V KC CQ + P+ L ++ S W + +D V P
Sbjct: 590 VARWVAKCPTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLP 636
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 113 bits (283), Expect = 7e-25
Identities = 58/201 (28%), Positives = 105/201 (51%), Gaps = 1/201 (0%)
Query: 590 LAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKW 649
+ + P P+ + +M + + ++++ L FI P W A + VKK G +
Sbjct: 483 IELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTSP-WGAPVLFVKKKDGSF 541
Query: 650 RMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVF 709
R+C+DY +LN K+ YPLP ID L+D G S +D S Y+Q+ + D K F
Sbjct: 542 RLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAF 601
Query: 710 MTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDL 769
T ++ + VM FGL NA A F R M+++F + + +++DD++V + + + L
Sbjct: 602 RTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHL 661
Query: 770 KEIFQQVRKANMRLNPAKCTF 790
+ + +++R+ + +KC+F
Sbjct: 662 RRVMEKLREQKLFAKLSKCSF 682
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.339 0.147 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,788,854
Number of Sequences: 26719
Number of extensions: 1299664
Number of successful extensions: 4592
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4423
Number of HSP's gapped (non-prelim): 153
length of query: 1546
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1434
effective length of database: 8,326,068
effective search space: 11939581512
effective search space used: 11939581512
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC125481.2