BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125368.2 - phase: 0
(430 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09470 unknown protein 177 8e-45
At1g18010 hypothetical protein 35 0.10
At1g18000 hypothetical protein 35 0.10
At5g23270 monosaccharide transporter 31 1.5
At5g04770 amino acid transporter-like protein 30 2.6
At5g45380 urea active transporter-like protein 29 4.4
At5g25752 putative protein 29 5.7
At3g19930 monosaccharide transport protein, STP4 28 7.5
At1g67990 putative S-adenosyl-L-methionine:trans-caffeoyl-Coenzy... 28 9.8
>At3g09470 unknown protein
Length = 437
Score = 177 bits (450), Expect = 8e-45
Identities = 89/136 (65%), Positives = 115/136 (84%), Gaps = 4/136 (2%)
Query: 8 HDEETPLVVES--PIQLQPHKSHSRDVHILSIAFVLIFLAYGAAQNLQSTLNTEEDLGTT 65
+DEE PL+ S +++ K ++RDVHILSI+F+LIFLAYGAAQNL++T+N +DLGT
Sbjct: 5 NDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVN--KDLGTI 62
Query: 66 SLGILYLSFTFFSVFASLVVRILGSKNALIIGTSGYWLYVAANLKPNWYTLVPASVYLGF 125
SLGILY+SF F S+ ASLVVR++GSKNAL++GT+GYWL+VAANLKP+W+T+VPAS+YLGF
Sbjct: 63 SLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPASLYLGF 122
Query: 126 CASIIWVGQITISTKV 141
ASIIWVGQ T T +
Sbjct: 123 AASIIWVGQGTYLTSI 138
>At1g18010 hypothetical protein
Length = 459
Score = 34.7 bits (78), Expect = 0.10
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 70 LYLSFTFFSVFASLVVRILGSKNALIIGTSGYWLYVAANLKPNWY----TLVPASVYLGF 125
+Y +FT F + +LG + L G S Y LY + L N + + A LG
Sbjct: 74 VYTAFTVFGLLGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGC 133
Query: 126 CASIIWVGQITIST 139
A ++W G+ + T
Sbjct: 134 GAGLLWAGEGAVMT 147
>At1g18000 hypothetical protein
Length = 459
Score = 34.7 bits (78), Expect = 0.10
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 70 LYLSFTFFSVFASLVVRILGSKNALIIGTSGYWLYVAANLKPNWY----TLVPASVYLGF 125
+Y +FT F + +LG + L G S Y LY + L N + + A LG
Sbjct: 74 VYTAFTVFGLLGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGC 133
Query: 126 CASIIWVGQITIST 139
A ++W G+ + T
Sbjct: 134 GAGLLWAGEGAVMT 147
>At5g23270 monosaccharide transporter
Length = 514
Score = 30.8 bits (68), Expect = 1.5
Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 1/67 (1%)
Query: 59 EEDLGTTSLGILYLSFTFFSVFASLVVRILGSKNALIIGTSGYWLYVAAN-LKPNWYTLV 117
+ +L T LYL+ F S AS + R+ G K +++IG+ + N L N L+
Sbjct: 80 DNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAINLEMLI 139
Query: 118 PASVYLG 124
++LG
Sbjct: 140 IGRLFLG 146
>At5g04770 amino acid transporter-like protein
Length = 583
Score = 30.0 bits (66), Expect = 2.6
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 77 FSVFASLVVRILGSKNAL-IIGTSGYWLYVAANLKPNWYTLVPASVYLGFCASIIWVGQI 135
F + SL+V +LG + +IG S + A + P T V AS +LG
Sbjct: 354 FGILTSLLVAMLGQARYMCVIGRSRVVPFWFAKIHPKTSTPVNASTFLG----------- 402
Query: 136 TISTKVL*LVTSTGNSGLFMHSISLLEILLHLLYSVMGRGEVPTA-----PLYCLLYSFS 190
I T L L T N L + SI L + + +++ R VP P C L FS
Sbjct: 403 -IFTAALALFTDL-NVLLNLVSIGTLFVFYMVANALIFRRYVPVGPTKPWPTLCFLTLFS 460
Query: 191 L*PLV 195
+ LV
Sbjct: 461 ITSLV 465
>At5g45380 urea active transporter-like protein
Length = 694
Score = 29.3 bits (64), Expect = 4.4
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 34/137 (24%)
Query: 63 GTTSL--GILY---LSF-TFFSVFASLVVRILGSKNALIIGTSGYWL---YVAANLKPNW 113
GTT L G+ Y L F FF+VF S +V WL YV A W
Sbjct: 29 GTTVLDQGVGYAVILGFGAFFAVFTSFLV----------------WLEKRYVGARHTSEW 72
Query: 114 YTLVPASVYLGFCASII-----WVGQITISTKVL*LVTSTGNSGLFMH-SISLLEILLHL 167
+ +V G AS+I W I S+ V G SG F + S + +++LL
Sbjct: 73 FNTAGRNVKTGLIASVIVSQWTWAATILQSSNV---AWQYGVSGPFWYASGATIQVLLFG 129
Query: 168 LYSVMGRGEVPTAPLYC 184
+ ++ + + P A C
Sbjct: 130 VMAIEIKRKAPNAHTVC 146
>At5g25752 putative protein
Length = 178
Score = 28.9 bits (63), Expect = 5.7
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 70 LYLSFTFFSVFASLVVRILGSKNALIIGTSG-----YWLYVAANLKPNWYTLVPASVYLG 124
L+LS+ F V A+LV ++ +NA+ +G SG + + V + +W ++
Sbjct: 55 LWLSYLFTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKMSWDWRKIL------- 107
Query: 125 FCASIIWVGQITISTKVL*LVTSTGNSGLFM--HSISLLEILLHLLYSVMG 173
++ +GQ I + S G SG +S+ + + HL +++G
Sbjct: 108 ---EVLILGQFVIERVMEAAQASAGLSGTIYGGYSLQTVNHIAHLSGALVG 155
>At3g19930 monosaccharide transport protein, STP4
Length = 514
Score = 28.5 bits (62), Expect = 7.5
Identities = 19/68 (27%), Positives = 33/68 (47%), Gaps = 1/68 (1%)
Query: 59 EEDLGTTSLGILYLSFTFFSVFASLVVRILGSKNALIIGTSGYWLYVAAN-LKPNWYTLV 117
+ L T LY++ S+FAS + R+ G K ++ +G +++ A N N L+
Sbjct: 77 DSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQNIAMLL 136
Query: 118 PASVYLGF 125
+ LGF
Sbjct: 137 IGRILLGF 144
>At1g67990 putative S-adenosyl-L-methionine:trans-caffeoyl-Coenzyme
A 3-O-methyltransferase
Length = 233
Score = 28.1 bits (61), Expect = 9.8
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 78 SVFASLVVRILGSKNALIIGT-SGYWLYVAANLKP 111
S+F S++V+I+ +KN + IG +GY L+ A P
Sbjct: 57 SLFLSMLVKIINAKNTIEIGVFTGYSLFTVALALP 91
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.344 0.150 0.524
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,961,074
Number of Sequences: 26719
Number of extensions: 340332
Number of successful extensions: 1283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1280
Number of HSP's gapped (non-prelim): 9
length of query: 430
length of database: 11,318,596
effective HSP length: 102
effective length of query: 328
effective length of database: 8,593,258
effective search space: 2818588624
effective search space used: 2818588624
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC125368.2