Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124972.10 - phase: 1 /pseudo
         (135 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g59050 unknown protein                                             164  1e-41
At2g43020 putative amine oxidase                                      162  6e-41
At1g65840 polyamine oxidase, putative                                 133  2e-32
At4g16310 hypothetical protein                                         65  1e-11
At5g13700 polyamine oxidase                                            45  9e-06
At3g13682 hypothetical protein                                         44  3e-05
At3g10390 hypothetical protein                                         33  0.035
At1g62830 flavin-containing amine oxidase                              33  0.059
At4g29720 unknown protein                                              31  0.23
At3g54010 pasticcino 1-A (PAS1-A)                                      27  3.3
At3g05210 putative nucleotide repair protein                           27  3.3
At1g80540 hypothetical protein                                         27  3.3
At5g19010 MAP kinase -like protein                                     27  4.2
At1g59840 hypothetical protein                                         26  5.5
At1g59590 unknown protein                                              26  5.5
At5g62030 unknown protein (At5g62030)                                  26  7.2
At2g32920 putative protein disulfide isomerase                         26  7.2
At1g14110 hypothetical protein                                         26  7.2

>At3g59050 unknown protein
          Length = 488

 Score =  164 bits (415), Expect = 1e-41
 Identities = 80/114 (70%), Positives = 92/114 (80%)

Query: 12  LLTKLIKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGCSYFL 71
           L + +I FEPKL  WK+ AI D+ VG+ENKIIL+F NVFWPN +FL VVAE S GCSYFL
Sbjct: 281 LKSGMITFEPKLPQWKQEAINDLGVGIENKIILNFDNVFWPNVEFLGVVAETSYGCSYFL 340

Query: 72  NLHKAAGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKILPDASSPVTIIV 125
           NLHKA  H VLVYMP G+ A+DIEK SDEAAANFAF QL+KILPDASSP+  +V
Sbjct: 341 NLHKATSHPVLVYMPAGQLARDIEKKSDEAAANFAFSQLQKILPDASSPINYLV 394


>At2g43020 putative amine oxidase
          Length = 490

 Score =  162 bits (409), Expect = 6e-41
 Identities = 79/109 (72%), Positives = 89/109 (81%)

Query: 17  IKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGCSYFLNLHKA 76
           IKFEPKL +WK+ AI D+ VG+ENKIILHF+ VFWP  +FL VVAE S GCSYFLNLHKA
Sbjct: 285 IKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHKA 344

Query: 77  AGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKILPDASSPVTIIV 125
            GH VLVYMP G+ AKDIEKMSDEAAANFA  QL++ILPDA  PV  +V
Sbjct: 345 TGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLV 393


>At1g65840 polyamine oxidase, putative
          Length = 497

 Score =  133 bits (335), Expect = 2e-32
 Identities = 65/114 (57%), Positives = 77/114 (67%)

Query: 12  LLTKLIKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGCSYFL 71
           L   LI+FEP+L  WK +AI+ + VG ENKI L F   FWPN +FL +VA  S  C YFL
Sbjct: 282 LKANLIQFEPELPQWKTSAISGLGVGNENKIALRFDRAFWPNVEFLGMVAPTSYACGYFL 341

Query: 72  NLHKAAGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKILPDASSPVTIIV 125
           NLHKA GH VLVYM  G  A+D+EK+SDEA ANF   QLKK+ PDA  P   +V
Sbjct: 342 NLHKATGHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMFPDAPDPAQYLV 395


>At4g16310 hypothetical protein
          Length = 1265

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 38/106 (35%), Positives = 53/106 (49%), Gaps = 4/106 (3%)

Query: 12   LLTKLIKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNE-DFLEVVAE---ISNGC 67
            L  + IKF P L DWK A+I  +  GV NK++L F  VFW +  D+    AE   +   C
Sbjct: 899  LKAETIKFSPPLPDWKYASIKQLGFGVLNKVVLEFPTVFWDDSVDYFGATAEETDLRGEC 958

Query: 68   SYFLNLHKAAGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKI 113
              F N+ K  G  VL+ + VG+ A +    S     N A   L+K+
Sbjct: 959  FMFWNVKKTVGAPVLIALVVGKAAFEYTNKSKSEHVNHAMMVLRKL 1004


>At5g13700 polyamine oxidase
          Length = 472

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 31/104 (29%), Positives = 47/104 (44%), Gaps = 4/104 (3%)

Query: 12  LLTKLIKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFW---PNEDFLEVVAEISNGCS 68
           L + L+ F+P L  WK  AI    V V  KI L F   FW   P ++F     E     +
Sbjct: 247 LQSDLLSFQPLLPRWKTEAIQKCDVMVYTKIFLKFPQCFWPCGPGQEFFIYAHEQRGYFT 306

Query: 69  YFLNLHKA-AGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLK 111
           ++ ++  A  G ++LV      Q+K +E  SD+     A   L+
Sbjct: 307 FWQHMENAYPGSNILVVTLTNEQSKRVEAQSDQETMKEAMSVLR 350


>At3g13682 hypothetical protein
          Length = 746

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 12  LLTKLIKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNE-DFLEVVAEIS-NGCSY 69
           L  + IKFEP+L   K+AAI  +  G+ NK+ + F +VFW +E D    + E S N   +
Sbjct: 407 LKKRSIKFEPELPRRKQAAIDRLGFGLLNKVAMLFPSVFWGDELDTFGCLNESSINRGEF 466

Query: 70  FL--NLHKAAGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKI 113
           FL    H  +G   LV +  G  A+  E        +   K+L+ I
Sbjct: 467 FLFYAYHTVSGGPALVALVAGEAAQRFECTEPSVLLHRVLKKLRGI 512


>At3g10390 hypothetical protein
          Length = 789

 Score = 33.5 bits (75), Expect = 0.035
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 17  IKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGCSY------F 70
           IKF P+L   K   I  +  G+ NK+ + F  VFW  +  L+    ++   +Y      F
Sbjct: 437 IKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTD--LDTFGHLTEDPNYRGEFFLF 494

Query: 71  LNLHKAAGHSVLVYMPVGRQAKDIEKM 97
            +    AG ++L+ +  G  A   E M
Sbjct: 495 YSYAPVAGGALLIALVAGEAAHKFETM 521


>At1g62830 flavin-containing amine oxidase
          Length = 844

 Score = 32.7 bits (73), Expect = 0.059
 Identities = 31/113 (27%), Positives = 52/113 (45%), Gaps = 8/113 (7%)

Query: 17  IKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNE--DFLEVVAEISNGCSYFL--N 72
           I+F P+L   K+ AI  +  G+ NK+ + F   FW  E   F  +  + S    +FL  +
Sbjct: 521 IEFYPELPHKKKEAIQRLGFGLLNKVAMLFPCNFWGEEIDTFGRLTEDPSTRGEFFLFYS 580

Query: 73  LHKAAGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKILPDASSPVTIIV 125
               +G  +LV +  G  A+  E +S   +     K++ +IL     P  I+V
Sbjct: 581 YSSVSGGPLLVALVAGDAAERFETLSPTDSV----KRVLQILRGIYHPKGIVV 629


>At4g29720 unknown protein
          Length = 533

 Score = 30.8 bits (68), Expect = 0.23
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 19/125 (15%)

Query: 19  FEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGCSYFLN----LH 74
           F P L D+K  AI  +  GV NK+ +      +P+   L++V +  +    F+     + 
Sbjct: 307 FSPPLPDFKSDAIRRLGYGVVNKLFVEMSQRKFPS---LQLVFDREDSEFRFVKIPWWMR 363

Query: 75  KAA-------GHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQL-----KKILPDASSPVT 122
           + A          VL+    G++A ++EK++DE   +     +     K++  D + P+T
Sbjct: 364 RTATITPIHSNSKVLLSWFAGKEALELEKLTDEEIKDAVMTTISCLTGKEVKNDTAKPLT 423

Query: 123 IIVLN 127
              LN
Sbjct: 424 NGSLN 428


>At3g54010 pasticcino 1-A (PAS1-A)
          Length = 635

 Score = 26.9 bits (58), Expect = 3.3
 Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 1/48 (2%)

Query: 17  IKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEIS 64
           + FE +LLD+ +A IA   +GV  KI+   +    P E + EV A IS
Sbjct: 137 LHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPY-EVKARIS 183


>At3g05210 putative nucleotide repair protein
          Length = 410

 Score = 26.9 bits (58), Expect = 3.3
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 40  NKIILHFKNVFWPNEDFLEVVAEISNGCSYFLNLHKAAGHSVLVYMPVGRQAKDIE 95
           N ++ H +NV W   D +       N C+ +L+L     H   +Y  +    K+ +
Sbjct: 135 NPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIRELQKNFK 190


>At1g80540 hypothetical protein
          Length = 481

 Score = 26.9 bits (58), Expect = 3.3
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 38  VENKIILHFKNVFWPNEDFLEVVAEISNGCSYFLNLHKAAGHSVLVYMPVGRQAKDIEKM 97
           V N+ I +      P    L V+A +    ++   L    G  VLVY+ V      +++ 
Sbjct: 208 VANQTIRYLTGALNPVRYVLNVIAGVMLAVAFLGLLFSFCGLRVLVYLVVADTCMAMDQW 267

Query: 98  SDEAAANFAFKQLKKILP--------DASSPVTIIVLNLFNSF 132
             + AA+ A  QL   L         D +  +T   +++ N++
Sbjct: 268 VHDPAADSALSQLLPCLDPKTIGETLDITKTMTATAVDMTNAY 310


>At5g19010 MAP kinase -like protein
          Length = 567

 Score = 26.6 bits (57), Expect = 4.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 11  RLLTKLIKFEPKLLDWKEAAIADI 34
           RLL K++ FEPK     E A+AD+
Sbjct: 291 RLLEKMLSFEPKDRPTAEEALADV 314


>At1g59840 hypothetical protein
          Length = 305

 Score = 26.2 bits (56), Expect = 5.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 61  AEISNGC---SYFLNLHKAAGHSVLVYMPVGRQAKDIEKMSDEAAA 103
           A  +N C   SY  NL    G S L ++P   QA  ++ + D+  A
Sbjct: 216 ARKNNDCLSESYLANLSLYPGRSELPFLPANTQAVILQPLGDKGIA 261


>At1g59590 unknown protein
          Length = 211

 Score = 26.2 bits (56), Expect = 5.5
 Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 1/45 (2%)

Query: 90  QAKDIEKMSDEAAANFAFKQLKKIL-PDASSPVTIIVLNLFNSFF 133
           + K+ E  +++  +    + LKKI  PD   PVT+I++ +F +FF
Sbjct: 104 EIKNTEPETEQKQSCVINENLKKIARPDHFLPVTVILVLVFLAFF 148


>At5g62030 unknown protein (At5g62030)
          Length = 453

 Score = 25.8 bits (55), Expect = 7.2
 Identities = 16/48 (33%), Positives = 24/48 (49%), Gaps = 3/48 (6%)

Query: 21  PKL-LDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGC 67
           P+L +DW EA +  +    E +I L F   +W N+    V    S+GC
Sbjct: 343 PRLSIDWGEAFLKPLLTTFEAEIALGFIRGWWENDSSSRV--NSSSGC 388


>At2g32920 putative protein disulfide isomerase
          Length = 440

 Score = 25.8 bits (55), Expect = 7.2
 Identities = 14/38 (36%), Positives = 25/38 (64%), Gaps = 2/38 (5%)

Query: 80  SVLVYMPVGRQAKDIEKMSD-EAAANFAFKQLKKILPD 116
           ++ V++P G+   D +   D ++ ANFA+KQ+K +L D
Sbjct: 105 TIKVFVP-GKAPIDYQGARDAKSIANFAYKQIKGLLSD 141


>At1g14110 hypothetical protein
          Length = 435

 Score = 25.8 bits (55), Expect = 7.2
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 18/83 (21%)

Query: 14  TKLIKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGCSYFLNL 73
           TKLIK  P+    KE     +      + + H  N  W   D L+         + FL  
Sbjct: 267 TKLIKLFPQ----KETVFHHLA-----RYLFHPTNQVWEYSDHLK---------NMFLEQ 308

Query: 74  HKAAGHSVLVYMPVGRQAKDIEK 96
             + G ++ VY P G + +  +K
Sbjct: 309 ASSTGETIEVYQPSGEKIQQTDK 331


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.324    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,752,017
Number of Sequences: 26719
Number of extensions: 101012
Number of successful extensions: 330
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 18
length of query: 135
length of database: 11,318,596
effective HSP length: 88
effective length of query: 47
effective length of database: 8,967,324
effective search space: 421464228
effective search space used: 421464228
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)


Medicago: description of AC124972.10