Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124970.11 + phase: 0 
         (211 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g37060 Athila retroelment ORF 1, putative                          103  7e-23
At4g07640 putative athila transposon protein                           99  1e-21
At4g07370                                                              95  2e-20
At2g10620 putative Athila retroelement ORF1 protein                    92  2e-19
At4g07600                                                              83  9e-17
At2g14040 putative retroelement pol polyprotein                        77  9e-15
At3g31340 Athila ORF 1, putative                                       71  4e-13
At1g37070 hypothetical protein                                         71  4e-13
At2g13260 putative Athila retroelement ORF1 protein                    70  6e-13
At4g07780 putative athila transposon protein                           69  1e-12
At1g36560 hypothetical protein                                         69  1e-12
At4g07660 putative athila transposon protein                           69  2e-12
At3g32890 Athila ORF 1, putative                                       69  2e-12
At4g03790 putative athila-like protein                                 69  2e-12
At2g10660 putative Athila retroelement ORF1 protein                    68  4e-12
At4g08050                                                              67  5e-12
At3g30655 hypothetical protein, 3' partial                             65  2e-11
At2g06160 putative Athila retroelement ORF1 protein                    65  2e-11
At2g07480 F9A16.15                                                     65  3e-11
At1g36130 hypothetical protein                                         65  3e-11

>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  103 bits (257), Expect = 7e-23
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 22/212 (10%)

Query: 10  KEVVEKETEHGEVEKESDQGVVENERKKKKGGEKSEKLIDEDSILRKSKSQILKDGDKPQ 69
           KE+  KE+ +   E   DQ    +     + G  +EK I+E  + + ++   L     P 
Sbjct: 441 KELPTKESPNQNTEDSLDQ----DGEDFCQNGNSAEKAIEEPILHQPTRP--LAPAASPL 494

Query: 70  V-------------IPSYVKLPYPHLAKNKKKEEGQFKKFMQL-FSQLQVNIPFGEALDQ 115
           V             IP   K P P   + KK    ++K  ++     L+V +P  + L  
Sbjct: 495 VEKPAAAKTKENVFIPPPYKPPLPFPGRFKKVMIQKYKALLEKQLKNLEVTMPLVDCLAL 554

Query: 116 MPVYAKFMKEMLTSRRKPKDDENIALSENCSAILQRKL-PPKLKDPGAFTIPCSIGPVDI 174
           +P   K++K+M+T R K      + LS  CSAI+Q+K+ P KL DPG+FT+PC++GP+  
Sbjct: 555 IPDSNKYVKDMITERIKEVQGM-VVLSHECSAIIQQKIIPKKLGDPGSFTLPCALGPLAF 613

Query: 175 GRALCDLGASINLMPLSMMKKLGSRELSPVSV 206
            + LCDLGAS++LMPL + KKLG  +  P ++
Sbjct: 614 SKCLCDLGASVSLMPLPVAKKLGFNKYKPCNI 645


>At4g07640 putative athila transposon protein
          Length = 866

 Score = 99.4 bits (246), Expect = 1e-21
 Identities = 56/139 (40%), Positives = 90/139 (64%), Gaps = 6/139 (4%)

Query: 62  LKDGDKPQVIPSYV-KLPYPHLAKNKKKEEGQFKK-FMQLFSQLQVNIPFGEALDQMPVY 119
           +K+ +K  V P Y  +LP+P   ++KK    +++  F +   ++++ IP  +AL  +P  
Sbjct: 440 VKNKEKVFVPPPYKPELPFP--GRHKKALADKYRAMFAKNIKEVELRIPLVDALALIPDS 497

Query: 120 AKFMKEMLTSRRKPKDDENIALSENCSAILQRKL-PPKLKDPGAFTIPCSIGPVDIGRAL 178
            KF+K+++  R +      + LS  CSAI+Q+K+ P KL DPG+FT+PCS+GP+   R L
Sbjct: 498 HKFLKDLIVERIQEVQGM-VVLSHGCSAIIQKKIIPKKLSDPGSFTLPCSLGPLAFNRCL 556

Query: 179 CDLGASINLMPLSMMKKLG 197
           CDLGAS++LM LS+ K+LG
Sbjct: 557 CDLGASVSLMALSVAKRLG 575


>At4g07370
          Length = 531

 Score = 95.1 bits (235), Expect = 2e-20
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 9/171 (5%)

Query: 33  NERKKKKGGEKSEKLIDEDSILRK--SKSQILK----DGDKPQVIPSYVKLPYPHLAKNK 86
           NE +  K  E  E ++D D+      + S  LK      ++   IP   K P P   ++K
Sbjct: 98  NEDQVDKPTEVLEPILDRDTRPTNPLTSSAALKLVAAKNNEIAFIPPPYKPPLPFPGRHK 157

Query: 87  KKEEGQFKK-FMQLFSQLQVNIPFGEALDQMPVYAKFMKEMLTSRRKPKDDENIALSENC 145
           K+ E +++  F +   ++++ IP  +AL  +P   KF+K+++  R +      + LS  C
Sbjct: 158 KEVEDKYRAMFAKNIKKVELRIPLADALTHIPDSQKFLKDLIMERIQEVQKTTV-LSHEC 216

Query: 146 SAILQRK-LPPKLKDPGAFTIPCSIGPVDIGRALCDLGASINLMPLSMMKK 195
           SAI+Q   +  KL DPG+FT+PCS+G +   + LCDLG S+NLMPLS+ K+
Sbjct: 217 SAIIQENDVSEKLGDPGSFTLPCSLGSLTFNKCLCDLGPSVNLMPLSVAKR 267


>At2g10620 putative Athila retroelement ORF1 protein
          Length = 451

 Score = 92.4 bits (228), Expect = 2e-19
 Identities = 54/143 (37%), Positives = 89/143 (61%), Gaps = 6/143 (4%)

Query: 58  KSQILKDGDKPQVIPSYVKLPYPHL-AKNKKKEEGQFK-KFMQLFSQLQVNIPFGEALDQ 115
           K  ++K+ +K  V P Y   P+P    ++KK    +++  F +   ++++ IP  +AL  
Sbjct: 192 KPVVVKNKEKVFVPPPYK--PHPSFPGRHKKALAHKYRVMFAKNIKEVELQIPLVDALAL 249

Query: 116 MPVYAKFMKEMLTSRRKPKDDENIALSENCSAILQRKL-PPKLKDPGAFTIPCSIGPVDI 174
           +    KF+K+++  R +      + LS+ CSAI+Q+K+   KL DPG+FT+PCS+GP+  
Sbjct: 250 IMDSHKFLKDLIVERIQELQGM-VVLSDECSAIIQKKIIHKKLSDPGSFTLPCSLGPLAF 308

Query: 175 GRALCDLGASINLMPLSMMKKLG 197
            + LCDLGAS +LMPLS+ K+LG
Sbjct: 309 NKCLCDLGASASLMPLSVTKRLG 331


>At4g07600
          Length = 630

 Score = 83.2 bits (204), Expect = 9e-17
 Identities = 43/103 (41%), Positives = 66/103 (63%), Gaps = 2/103 (1%)

Query: 96  FMQLFSQLQVNIPFGEALDQMPVYAKFMKEMLTSRRKPKDDENIALSENCSAILQRKL-P 154
           F +   ++++ IP  +AL  +    KF+K+++  R +      + LS  CSAI+Q+K+ P
Sbjct: 2   FAKNIKEVELRIPLVDALALILDTHKFLKDLIVERIQEVQGM-VVLSHECSAIIQKKIVP 60

Query: 155 PKLKDPGAFTIPCSIGPVDIGRALCDLGASINLMPLSMMKKLG 197
            KL DPG+FT+PC +G V   R LCDLGA ++ MPLS+ K+LG
Sbjct: 61  KKLSDPGSFTLPCFLGTVAFNRCLCDLGALVSPMPLSIAKRLG 103


>At2g14040 putative retroelement pol polyprotein
          Length = 841

 Score = 76.6 bits (187), Expect = 9e-15
 Identities = 49/152 (32%), Positives = 70/152 (45%), Gaps = 37/152 (24%)

Query: 56  KSKSQILKDGDKPQVIPSYV-KLPYPHLAKNKKKEEGQFKKFMQLFSQLQVNIPFGEALD 114
           K + Q L++  K  V+P YV KLP+P   + K + E ++  F ++  QLQ          
Sbjct: 2   KLRKQTLEEKAKKTVLPPYVPKLPFPG-RQRKIQREKEYSLFDEIMRQLQ---------- 50

Query: 115 QMPVYAKFMKEMLTSRRKPKDDENIALSENCSAILQRKLPPKLKDPGAFTIPCSIGPVDI 174
                                      S  CSAILQ  +P K +DPG+F +P  IG    
Sbjct: 51  -------------------------RYSPECSAILQNVIPVKREDPGSFVLPSRIGEYTF 85

Query: 175 GRALCDLGASINLMPLSMMKKLGSRELSPVSV 206
            R LCDLGA ++LMP S+ K+LG    +P  +
Sbjct: 86  DRCLCDLGAGVSLMPFSVAKRLGDTNFTPTKM 117


>At3g31340 Athila ORF 1, putative
          Length = 781

 Score = 71.2 bits (173), Expect = 4e-13
 Identities = 51/136 (37%), Positives = 67/136 (48%), Gaps = 27/136 (19%)

Query: 72  PSYV-KLPYP---HLAKNKKKEEGQFKKFMQLFSQLQVNIPFGEALDQMPVYAKFMKEML 127
           P YV KLP+P      +++K+EE        L  + Q      +  D + V A   KEM+
Sbjct: 466 PPYVPKLPFPGRERQIQSRKREE------YALLVESQRQQKEAQLTDVVEVLAG--KEMV 517

Query: 128 TSRRKPKDDENIALSENCSAILQRKLPPKLKDPGAFTIPCSIGPVDIGRALCDLGASINL 187
           ++               CSAI    +P KL DPG+F +PC IG     R LCDLGA +NL
Sbjct: 518 ST---------------CSAIPPATIPEKLGDPGSFVLPCRIGKSAFERCLCDLGAGVNL 562

Query: 188 MPLSMMKKLGSRELSP 203
           MPLSM K+LG     P
Sbjct: 563 MPLSMSKRLGITNFKP 578


>At1g37070 hypothetical protein
          Length = 590

 Score = 71.2 bits (173), Expect = 4e-13
 Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 121 KFMKEMLTSRRKPKDDENIALSENCSAILQRKLPPKLKDPGAFTIPCSIGPVDIGRALCD 180
           KF  E L   +K ++ E I+ +       ++ +  KL DPG+FT+PCS+GP+   R LCD
Sbjct: 221 KFKIEKL---KKDQNQEMISSASTQETYKKKIIQEKLDDPGSFTLPCSLGPLTFNRCLCD 277

Query: 181 LGASINLMPLSMMKKLGSRE 200
           LGAS++LMPLS  K+LG  E
Sbjct: 278 LGASVSLMPLSTAKRLGIME 297


>At2g13260 putative Athila retroelement ORF1 protein
          Length = 622

 Score = 70.5 bits (171), Expect = 6e-13
 Identities = 50/153 (32%), Positives = 77/153 (49%), Gaps = 31/153 (20%)

Query: 42  EKSEKLIDEDSILRKSKSQILKDGDKPQVIPSYVKLPYPH--LAKNKKKEEGQFKKFMQL 99
           EK++K  + + ++ KS  +      K +  P    LP+P   L K KKK    FK  M  
Sbjct: 327 EKAKKSTNGNDVVTKSVEK--NAASKVESPPYEPPLPFPGRVLTKAKKKVFSSFKSNM-- 382

Query: 100 FSQLQVNIPFGEALDQMPVYAKFMKEMLTSRRKPKDDENIALSENCSAILQRKLPPKLKD 159
            S++   +P  E L Q+P++ +F++ +L +R K                        L+D
Sbjct: 383 -SRVGAPLPCVENLSQVPLHFQFIQAILENREK------------------------LED 417

Query: 160 PGAFTIPCSIGPVDIGRALCDLGASINLMPLSM 192
           PG FTIPCS+G + +  ALCD GAS+N+M L+M
Sbjct: 418 PGKFTIPCSLGDLQLDDALCDSGASVNVMSLAM 450


>At4g07780 putative athila transposon protein
          Length = 446

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 121 KFMKEMLTSRRKPKDDENIALSENCSAILQRKLPPKLKDPGAFTIPCSIGPVDIGRALCD 180
           KF  E L   +K ++ E I+         ++ +  KL DPG+FT+PCS+GP+   R LCD
Sbjct: 248 KFKIEKL---KKDQNQEMISRVSTQETYKKKFIQEKLDDPGSFTLPCSLGPLTFNRCLCD 304

Query: 181 LGASINLMPLSMMKKLG 197
           LGAS++LMPLS  K+LG
Sbjct: 305 LGASVSLMPLSTAKRLG 321


>At1g36560 hypothetical protein
          Length = 524

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 101 SQLQVNIPFGEALDQMPVYAKFMKEMLTSRRK---PKDDENIALSENCSAILQRKLPPKL 157
           ++++  +P  E L+ +P   K ++ ++    K     DDE+ A     +   +R +  KL
Sbjct: 62  NEIEAVMPLMEVLNLIPNPHKDVRNLILEWIKMYHDSDDESDATPSRAAD--KRIVQEKL 119

Query: 158 KDPGAFTIPCSIGPVDIGRALCDLGASINLMPLSMMKKLG 197
           +DPG+FT+PCS+G +   + LCDLGAS++LMPLS+ K+LG
Sbjct: 120 EDPGSFTLPCSLGSLTFNKCLCDLGASVSLMPLSVAKRLG 159


>At4g07660 putative athila transposon protein
          Length = 724

 Score = 68.9 bits (167), Expect = 2e-12
 Identities = 32/52 (61%), Positives = 42/52 (80%), Gaps = 1/52 (1%)

Query: 147 AILQRKL-PPKLKDPGAFTIPCSIGPVDIGRALCDLGASINLMPLSMMKKLG 197
           AI Q+K+ P KL DPG+FT+PCS+GP+   R LCDLGA ++LMPLS+ K+LG
Sbjct: 3   AITQKKIVPKKLIDPGSFTLPCSLGPLAFKRCLCDLGALVSLMPLSVAKRLG 54


>At3g32890 Athila ORF 1, putative
          Length = 755

 Score = 68.9 bits (167), Expect = 2e-12
 Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 9/140 (6%)

Query: 67  KPQVIPSYVKLPYPHLAKNKKKEEGQFKKFMQLFSQLQVNIPFGEALDQMPVYAKFMKEM 126
           KP  +PS   LP+       +K +    K +    +++  +P  E L+ +P   K ++ +
Sbjct: 436 KPTPLPSSA-LPWTFRKAWMEKYKSVASKQLD---EIEAVMPLIEVLNLIPDPHKDVRNL 491

Query: 127 LTSRRK---PKDDENIALSENCSAILQRKLPPKLKDPGAFTIPCSIGPVDIGRALCDLGA 183
           +  R K     DDE+ A     S   +R +  KL+DPG+FT+PCSIG +     LCDLGA
Sbjct: 492 ILERIKMYHDSDDESDATPSRASD--KRIVQEKLEDPGSFTLPCSIGELAFSDCLCDLGA 549

Query: 184 SINLMPLSMMKKLGSRELSP 203
           S++LMPLS+ ++L   +  P
Sbjct: 550 SVSLMPLSVARRLEFIQYKP 569


>At4g03790 putative athila-like protein
          Length = 1064

 Score = 68.6 bits (166), Expect = 2e-12
 Identities = 34/96 (35%), Positives = 60/96 (62%), Gaps = 1/96 (1%)

Query: 102 QLQVNIPFGEALDQMPVYAKFMKEMLTSRRKPKDDENIALSENCSAILQRKL-PPKLKDP 160
           +++  +P  E L+ +P + K ++ ++  + K   D +       S ++ +++   KL+DP
Sbjct: 352 EIEAVMPLMEVLNLIPDHHKDVRNLILEKIKMYHDSDDESDATPSRVVDKRIVQEKLEDP 411

Query: 161 GAFTIPCSIGPVDIGRALCDLGASINLMPLSMMKKL 196
           G+FT+PCSIG +     LCDLGAS++LMPLSM ++L
Sbjct: 412 GSFTLPCSIGELAFSDFLCDLGASVSLMPLSMGRRL 447


>At2g10660 putative Athila retroelement ORF1 protein
          Length = 1303

 Score = 67.8 bits (164), Expect = 4e-12
 Identities = 51/193 (26%), Positives = 93/193 (47%), Gaps = 10/193 (5%)

Query: 12  VVEKETEHGEVEKESDQGVVENERKKKKGGEKSEKLIDEDSILRKSKSQILKDGDKPQVI 71
           +V+ + + GE   + +  VV  +   +   +    L ++ +I+ +   +      KP  +
Sbjct: 291 IVDSDVQEGEACTQIEISVVGLDHSAESCFQIHSNLDEKAAIIDRMVKRF-----KPAPL 345

Query: 72  PSYVKLPYPHLAKNKKKEEGQFKKFMQLFSQLQVNIPFGEALDQMPVYAKFMKEMLTSRR 131
           PS   LP+       ++     +K +     + + I   + L+ +P   K ++  +  R 
Sbjct: 346 PSRA-LPWKFRKAWIERYNSLAEKQLDEMEAVMLLI---KVLNLIPDPHKDVRNSILERI 401

Query: 132 KPKDDENIALSENCSAI-LQRKLPPKLKDPGAFTIPCSIGPVDIGRALCDLGASINLMPL 190
           K   D       N S + ++R +  KL+DPG+FT+PCSIG +     LCDLGAS++LMPL
Sbjct: 402 KMYQDSEDECDANPSRVTVKRSVQEKLEDPGSFTLPCSIGQLVFSNCLCDLGASVSLMPL 461

Query: 191 SMMKKLGSRELSP 203
           S+ +KL   +  P
Sbjct: 462 SVARKLEFTQYRP 474


>At4g08050
          Length = 1428

 Score = 67.4 bits (163), Expect = 5e-12
 Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 5/105 (4%)

Query: 102 QLQVNIPFGEALDQMPVYAKFMKEMLTSRRK---PKDDENIALSENCSAILQRKLPPKLK 158
           +++  +P  E L+ +    K ++ ++  R K     DDE+ A     +   +R +  KL+
Sbjct: 515 EIEAVMPLMEVLNLILDPHKVVRNLILERIKMYHDSDDESDATPSRAAD--KRIVQEKLE 572

Query: 159 DPGAFTIPCSIGPVDIGRALCDLGASINLMPLSMMKKLGSRELSP 203
           DPG+FT+PCSIG       LCDLGAS+NLMPLSM ++L   +  P
Sbjct: 573 DPGSFTLPCSIGEFAFSDCLCDLGASVNLMPLSMARRLEFIQYKP 617


>At3g30655 hypothetical protein, 3' partial
          Length = 660

 Score = 65.5 bits (158), Expect = 2e-11
 Identities = 28/54 (51%), Positives = 40/54 (73%)

Query: 150 QRKLPPKLKDPGAFTIPCSIGPVDIGRALCDLGASINLMPLSMMKKLGSRELSP 203
           Q+ +P KL+DPG+FT+PCSI  +     LCDLGAS+++MPLS+ +KLG  +  P
Sbjct: 584 QKIVPEKLEDPGSFTLPCSIRQLTFSNCLCDLGASVSIMPLSVARKLGFVQYKP 637


>At2g06160 putative Athila retroelement ORF1 protein
          Length = 750

 Score = 65.5 bits (158), Expect = 2e-11
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 19/201 (9%)

Query: 4   DKDVEVKEVVEKETE-----HGEVEKESDQGVVENERKKKKGGEKSEKLIDEDSILRKSK 58
           D+++  + V    TE      GE   + +  V E +   +   +    L ++ +I+ +  
Sbjct: 455 DRELSTQHVSTSNTEDSVIQEGEASVQIEVSVAEIDYAAQTFYQAQSDLEEKATIIERMV 514

Query: 59  SQILKDGDKPQVIPSYVKLPYPHLAKNKKKEEGQFKKFMQLFSQLQVNIPFGEALDQMPV 118
            +      KP   PS + LP+      K   E   +K +    +++  +P  E L  +  
Sbjct: 515 KRF-----KPAPSPS-LALPWTFRKAWKSIYESLAEKQLD---EMESVMPLVEVLKLISD 565

Query: 119 YAKFMKEMLTSRR---KPKDDENIALSENCSAILQRKLPPKLKDPGAFTIPCSIGPVDIG 175
             K ++ ++  R    +  DDE   +    +   +R +  KL+DPG+FT+PCSI  +   
Sbjct: 566 PHKDVRNLILERLNIYQDSDDEEDVIMHQAAG--ERIIQEKLEDPGSFTLPCSISQLTFS 623

Query: 176 RALCDLGASINLMPLSMMKKL 196
             LCDLGAS++LMPLS+ +KL
Sbjct: 624 NCLCDLGASVSLMPLSVARKL 644


>At2g07480 F9A16.15
          Length = 1012

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 49/134 (36%), Positives = 74/134 (54%), Gaps = 22/134 (16%)

Query: 64  DGDKPQVIPS-YVKLP-YPHLAKNKKKEEGQFKK----FMQLFSQLQVNIPFGEALDQMP 117
           D   P  IPS YV  P +P   +  + +E  F+K    F++   +L+  +P  +      
Sbjct: 477 DPSNPIHIPSPYVPKPAFPE--RIAQIDEMIFQKHKMMFIKCIKELEEKVPLVDT----- 529

Query: 118 VYAKFMKEMLTSRRKPKDDENIA-LSENCSAILQRK-LPPKLKDPGAFTIPCSIGPVDIG 175
                 KEM+  R  P++ + I  LS  CSAI+Q+K +P KL DPG+FT+PCS+ P+   
Sbjct: 530 -----PKEMIMER--PQEAQQIVELSFECSAIIQKKVIPKKLGDPGSFTLPCSLAPLVFN 582

Query: 176 RALCDLGASINLMP 189
            +LCDLGAS++  P
Sbjct: 583 NSLCDLGASMDEEP 596


>At1g36130 hypothetical protein
          Length = 914

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 32/101 (31%), Positives = 54/101 (52%)

Query: 110 GEALDQMPVYAKFMKEMLTSRRKPKDDENIALSENCSAILQRKLPPKLKDPGAFTIPCSI 169
           G +LD+  +  + +  ++  + K +    + ++E    I   +   KL DPG+F + CSI
Sbjct: 546 GISLDEAKLLTRDISAIMLPKAKKEKAHRVDIAEYIRTITPGQTTEKLPDPGSFVLDCSI 605

Query: 170 GPVDIGRALCDLGASINLMPLSMMKKLGSRELSPVSVFIEF 210
                 R+LCDLG+SINLMP S+ ++LG     P  + + F
Sbjct: 606 STSRFSRSLCDLGSSINLMPKSVAERLGMTHYRPTRITLLF 646


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.313    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,018,562
Number of Sequences: 26719
Number of extensions: 233193
Number of successful extensions: 1902
Number of sequences better than 10.0: 207
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 520
length of query: 211
length of database: 11,318,596
effective HSP length: 95
effective length of query: 116
effective length of database: 8,780,291
effective search space: 1018513756
effective search space used: 1018513756
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)


Medicago: description of AC124970.11