BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124967.5 + phase: 0 /pseudo
(233 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33250 unknown protein 298 1e-81
At2g42330 hypothetical protein 31 0.64
At4g04530 hypothetical protein 29 2.4
At3g51310 vacuolar sorting protein 35 homolog 28 4.2
At3g09400 unknown protein 28 4.2
At3g61140 FUSCA PROTEIN (FUS6) 27 9.3
At3g29400 unknown protein (At3g29400) 27 9.3
>At4g33250 unknown protein
Length = 226
Score = 298 bits (764), Expect = 1e-81
Identities = 155/222 (69%), Positives = 182/222 (81%), Gaps = 6/222 (2%)
Query: 13 QGGTAYTVEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLESNLCLLRLYQFESEKMSSQ 72
Q ++YTVEQLVA N +NP+ILPDLENYVN V+SQTYSLE NLCLLRLYQFE E+M++
Sbjct: 9 QEQSSYTVEQLVALNPFNPEILPDLENYVN--VTSQTYSLEVNLCLLRLYQFEPERMNTH 66
Query: 73 IVARILVKALMAMPAPDFSLCLFLIPERVIANGRSSSRH*L-FCLTI*RFRQFWDEASKS 131
IVARILVKALMAMP PDFSLCLFLIPERV + S L L RF+QFWDEA+K+
Sbjct: 67 IVARILVKALMAMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQQFWDEAAKN 126
Query: 132 RHIVEAVPGFEQAIQGYAIHVLSLTYQKIPRTVLAEAINVEGLSLDKFLEHQVENSGWVI 191
RHI+EAVPGFEQAIQ YA H+LSL+YQK+PR+VLAEA+N++G SLDKF+E QV NSGW++
Sbjct: 127 RHILEAVPGFEQAIQAYASHLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQQVTNSGWIV 186
Query: 192 EKSQGKGQLIVLPRNEFNDPILKKNTADSVPLEHVTRIFPIL 233
EK G IVLP+NEFN P LKKNT ++VPLEH+ RIFPIL
Sbjct: 187 EKEGGS---IVLPQNEFNHPELKKNTGENVPLEHIARIFPIL 225
>At2g42330 hypothetical protein
Length = 752
Score = 30.8 bits (68), Expect = 0.64
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 120 RFRQFWDEASKSRHIVEAVPGFEQAIQGYAIHVLSLTYQKIPRTVLAEAINVEGLS 175
R Q WD S + H +EA+ ++ ++ +S Y ++ V+ A+ V G++
Sbjct: 360 RMFQGWDPLSDAEHGIEAISSWKMLLEVEDNQSISTPYSQLVSEVILPAVRVSGIN 415
>At4g04530 hypothetical protein
Length = 917
Score = 28.9 bits (63), Expect = 2.4
Identities = 21/73 (28%), Positives = 38/73 (51%), Gaps = 8/73 (10%)
Query: 20 VEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLES--NLCLLRLYQFESEKMSSQIVARI 77
V QL FN ++P+LE Y+ + +QT S S +L L+ Y S M ++++ R+
Sbjct: 219 VFQLFVFN-----VIPELERYLPNPDDTQTISETSLTSLPPLKTYH-NSNIMETELIPRL 272
Query: 78 LVKALMAMPAPDF 90
+ L+ + P +
Sbjct: 273 SISPLLPIDDPPY 285
>At3g51310 vacuolar sorting protein 35 homolog
Length = 789
Score = 28.1 bits (61), Expect = 4.2
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 19 TVEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLESNL---CLLRLYQFESEKMSSQIVA 75
T +++ A ++ D + ++D++ + + E NL + +LY + E+MS IVA
Sbjct: 448 TADEVDALFELAKGLMKDFDGTIDDEIDEEDFQEEQNLVARLVNKLYIDDPEEMSKHIVA 507
>At3g09400 unknown protein
Length = 650
Score = 28.1 bits (61), Expect = 4.2
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 154 SLTYQKIPRTVLAEAINVEGLSLDKFLEHQVENSGWVIEKSQGKGQLIVLPRNEFNDPIL 213
SL Q +PR+ + ++ + GL +FL +E+ +K++ K +L F P L
Sbjct: 110 SLPLQPVPRSPIKKSDHGSGLFERRFLSGPIESGLVSGKKTKEKAKLKKSGSKSFTKPKL 169
Query: 214 KKNTADSVPLEHV 226
KK+ + ++V
Sbjct: 170 KKSESKIFTFKNV 182
>At3g61140 FUSCA PROTEIN (FUS6)
Length = 441
Score = 26.9 bits (58), Expect = 9.3
Identities = 33/151 (21%), Positives = 61/151 (39%), Gaps = 17/151 (11%)
Query: 32 DILPDLENYVNDQVSSQTYSLESNLCLLRLYQFESEKMSSQIVARILVKALMAMPAPDFS 91
D+ P+L N N+ ++ Q + LC L F+ ++ +++ I +F
Sbjct: 240 DVNPELGNSYNEVIAPQDIATYGGLCALA--SFDRSELKQKVIDNI-----------NFR 286
Query: 92 LCLFLIPE-RVIANGRSSSRH*LFCLTI*RFRQFWDEASKSRHIVEAVPGFEQAIQGYAI 150
L L+P+ R + N SSR+ CL H+ + V I+ A+
Sbjct: 287 NFLELVPDVRELINDFYSSRY-ASCLEY--LASLKSNLLLDIHLHDHVDTLYDQIRKKAL 343
Query: 151 HVLSLTYQKIPRTVLAEAINVEGLSLDKFLE 181
+L + + + +A+A L+K LE
Sbjct: 344 IQYTLPFVSVDLSRMADAFKTSVSGLEKELE 374
>At3g29400 unknown protein (At3g29400)
Length = 658
Score = 26.9 bits (58), Expect = 9.3
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 24 VAFNRYNPDILPDLENYVNDQVSSQTYSLESNLCLL--------RLYQFESEKMSSQIVA 75
V + NPD++ DL+N N ++S +C + LY E EK+S + V
Sbjct: 195 VVVDLVNPDVILDLKNIANTMIASGYDRECIQVCTMVRKDALDEFLYNHEVEKLSIEDVL 254
Query: 76 RI 77
R+
Sbjct: 255 RM 256
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.139 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,779,366
Number of Sequences: 26719
Number of extensions: 179898
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 8
length of query: 233
length of database: 11,318,596
effective HSP length: 96
effective length of query: 137
effective length of database: 8,753,572
effective search space: 1199239364
effective search space used: 1199239364
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC124967.5