BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124967.11 + phase: 0
(602 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g03140 similar to late embryogenesis abundant proteins 556 e-159
At3g50790 putative LEA protein 157 2e-38
At5g49950 unknown protein 108 9e-24
At3g04000 short-chain type dehydrogenase/reductase like protein 33 0.46
At2g31060 putative GTP-binding protein 32 1.3
At5g05940 unklnown protein 31 1.7
At1g79410 unknown protein 30 3.0
At1g73100 putative protein 30 3.9
At3g27910 hypothetical protein 29 6.6
At1g10510 unknown protein 29 6.6
At4g21700 hypothetical protein 29 8.6
At3g19640 unknown protein 29 8.6
>At2g03140 similar to late embryogenesis abundant proteins
Length = 1805
Score = 556 bits (1434), Expect = e-159
Identities = 314/621 (50%), Positives = 412/621 (65%), Gaps = 61/621 (9%)
Query: 13 AKPFPSRQFRL----YKR--RRLKIKASFPVPPPSPFENLFNTLISQCSSVNSIDFIAPS 66
A PF R+ R +KR R L + S PPP F+ + SS +APS
Sbjct: 22 ASPFILRRSRKRGARFKRQSRNLVLVNSSIFPPP------FDGSVPLDSS------LAPS 69
Query: 67 L-GFASGSALFFS-RF----------KSSQNSDVGEWILFASPTPFNRFVLLRCPSISFK 114
L G ASG A++ S RF K + VGEWILF +PTPFNRFVLLRC +SF
Sbjct: 70 LAGIASGLAVYLSSRFFGKSLEKISDKIVDDVVVGEWILFTTPTPFNRFVLLRCSLLSFD 129
Query: 115 DN------ERLIKDEKHY-----GRIRVNKREKDLEEELKYQRVCLSASDGGVVSLDWPV 163
D+ +RL+ +E+H+ G+I + D + L+YQRVC++ DGGVVSLDWP
Sbjct: 130 DDSEKSLSDRLVTEERHFVTLDSGKIVRDGAVTDEKTPLEYQRVCITMEDGGVVSLDWPA 189
Query: 164 ELDLEEERGLDSTLLIVPGTPQGSMDDNIRVFVIDALKRGFFPVVMNPRGCASSPITTPR 223
LD+ EERGLD+T++ +PGTP+GSM++ +R FV +AL+RG FPVVMNPRGCA SP+TTPR
Sbjct: 190 NLDIREERGLDTTVVFIPGTPEGSMEEGVRSFVCEALRRGVFPVVMNPRGCAGSPLTTPR 249
Query: 224 LFTAADSDDICTAITYINKARPWTTLMGVGWGYGANMLTKYLAEVGERTPLTAATCIDNP 283
LFTA DSDDI TA+ +++K RPWTTL VG GYGANMLTKYLAE GERTPLTAA CIDNP
Sbjct: 250 LFTAGDSDDISTALRFLSKTRPWTTLTAVGRGYGANMLTKYLAEAGERTPLTAAVCIDNP 309
Query: 284 FDLDEATRTFPYHHVTDQKLTRGLINILQTNKALFQGKAKGXDVGKALLAKSVRDFEEAI 343
FDL+E TRT PY DQ+LTRGL+ IL NK LFQG+AK DVGKAL +KSVR+F++A+
Sbjct: 310 FDLEEITRTSPYSTSLDQQLTRGLVEILLANKELFQGRAKAFDVGKALCSKSVREFDKAL 369
Query: 344 SMVSYGFVDIEDFYTKASTRNMIKDIKIPVLFIQSDNGMVPAFSVPRNLIAENPFTSLLL 403
SMV+YG IEDFY+ +TR +I ++K+P+LFIQ+D+ +VP +++PR+ IAENPFTSLLL
Sbjct: 370 SMVTYGCESIEDFYSSCATREVIGEVKVPLLFIQNDD-VVPPYTIPRSSIAENPFTSLLL 428
Query: 404 CSCLSSSVMDTDTSALSWCQ-LVTVEVAI*LSIFYMCNFGMHMQWLAAVELGLLKGRHPL 462
CS S +++D T A+SWCQ L ++ + + MQWL AVELGLLKGRHPL
Sbjct: 429 CSS-SPNLIDGRTVAVSWCQDLAKIDFPM-----------LAMQWLTAVELGLLKGRHPL 476
Query: 463 LTDIDLTIIPSKGLTLVEDARTDKNPKVGKLLELARSDAYNGYSIDPSEDLLEGSKNDAG 522
L D+D+T+ PSKGL E +K+ KL++ A NGY +DP + LE S
Sbjct: 477 LEDVDVTVNPSKGLVFSEARAPEKSIGAKKLVQAAHEKTVNGYHLDPFRETLEDSDMTPN 536
Query: 523 LHFGPQQDVQQNFEQGDMSLQVKDGPLQQTSSSGRALVGEEDAASV-DSEHGHVMQTAQV 581
+ P+ D+++N + + + S R E++ ++V +S+ G V+QTA+V
Sbjct: 537 SNLSPETDLEKN-----VKIDYGSDETENNIVSTRVESIEDNESNVEESDRGQVLQTAEV 591
Query: 582 VTNMLDVTMPGTLTEEQKKKV 602
V +MLDVTMPGTL E+KKKV
Sbjct: 592 VVSMLDVTMPGTLKAEEKKKV 612
>At3g50790 putative LEA protein
Length = 408
Score = 157 bits (396), Expect = 2e-38
Identities = 92/266 (34%), Positives = 146/266 (54%), Gaps = 6/266 (2%)
Query: 142 LKYQRVCLSASDGGVVSLDWPVELDLEEERGLDSTLLIV-PGTPQGSMDDNIRVFVIDAL 200
++ +R CL D G V+LDW D DS +LI+ PG GS D +R ++ A
Sbjct: 91 VRLRRECLRTKDNGSVALDWVAGEDRHFPP--DSPILILLPGLTGGSQDSYVRHMLLRAQ 148
Query: 201 KRGFFPVVMNPRGCASSPITTPRLFTAADSDDICTAITYINKARPWTTLMGVGWGYGANM 260
+ + VV N RGC SP+TTP+ ++A+ DI I ++ P L GW G N+
Sbjct: 149 SKKWRCVVFNSRGCGDSPVTTPQFYSASFLGDIGEVIDHVVDKFPKANLYAAGWSLGGNI 208
Query: 261 LTKYLAEVGERTPLTAATCIDNPFDLDEATRTF--PYHHVTDQKLTRGLINILQTNKALF 318
L YL + PLTAA + NPFDL A F +++V D+ L++ L I + LF
Sbjct: 209 LVNYLGQESHNCPLTAAVSLCNPFDLVIADEDFHKGFNNVYDKALSKSLRRIFSKHSLLF 268
Query: 319 QGKAKGXDVGKALLAKSVRDFEEAISMVSYGFVDIEDFYTKASTRNMIKDIKIPVLFIQS 378
+ ++ A A++VRDF++ ++ VS+GF ++++Y+K+S+ IK ++IP+L IQ+
Sbjct: 269 EDIGGEFNIPLAANAETVRDFDDGLTRVSFGFKSVDEYYSKSSSSKAIKHVRIPLLCIQA 328
Query: 379 DNG-MVPAFSVPRNLIAENPFTSLLL 403
N + P +PR+ I NP L++
Sbjct: 329 ANDPIAPERGIPRDDIKANPNCVLIV 354
>At5g49950 unknown protein
Length = 537
Score = 108 bits (270), Expect = 9e-24
Identities = 74/249 (29%), Positives = 120/249 (47%), Gaps = 17/249 (6%)
Query: 144 YQRVCLSASDGGVVSLDWPVELDLEE---------ERGLDST--LLIVPGTPQGSMDDNI 192
Y+R+ A+DGG ++LDW + D+ E G D T +IVPG S I
Sbjct: 107 YKRILYQATDGGTIALDWLMHSDVVEGISQVVNASNPGTDRTPIAIIVPGLTSDSSAAYI 166
Query: 193 RVFVIDALKRGFFPVVMNPRGCASSPITTPRLFTAADSDDICTAITYINKARPWTTLMGV 252
+ K G+ VV N RG +T+ ++TA ++D+ I +I+ P L V
Sbjct: 167 KHIAFRLAKEGWNVVVQNHRGLGGISLTSDCVYTAGWTEDLRKVIAHIHSQFPEAPLFAV 226
Query: 253 GWGYGANMLTKYLAEVGERTPLTAATCIDNPFDL---DEATRTFPYHHVTDQKLTRGLIN 309
G GAN+L KYL E G TPL AT + +P+DL D V D+ LT GL
Sbjct: 227 GTSIGANVLVKYLGEDGPNTPLIGATAVCSPWDLLICDRFINRKLVQKVYDRMLTIGLQG 286
Query: 310 ILQTNKALFQGKAKGXDVGKALLAKSVRDFEEAISMVSYGFVDIEDFYTKASTRNMIKDI 369
Q + ++ A + K ++SVR+F+ + + F + +Y ++S+ ++++
Sbjct: 287 YAQLHHSIISRIADWEGIKK---SRSVREFDNYATRLVAKFETTDTYYRRSSSSQYVENV 343
Query: 370 KIPVLFIQS 378
+P+L I +
Sbjct: 344 AVPLLCISA 352
>At3g04000 short-chain type dehydrogenase/reductase like protein
Length = 272
Score = 33.1 bits (74), Expect = 0.46
Identities = 27/93 (29%), Positives = 40/93 (42%), Gaps = 14/93 (15%)
Query: 303 LTRGLINILQTNKALFQGKAKGXDVGKALLAKSVRDFEEAISMVSYGFVDIEDFYT---- 358
L+ L+ L TN + + +LAK ++ E ++ VS G V E FYT
Sbjct: 164 LSTSLVQTLNTNYGSYTASKAAVEAMAKILAKELKGTEITVNCVSPGPVATEMFYTGLSN 223
Query: 359 ----KASTRNMI------KDIKIPVLFIQSDNG 381
K ++N+ KDI V F+ SD G
Sbjct: 224 EIVEKVKSQNLFGRIGETKDIAPVVGFLASDAG 256
>At2g31060 putative GTP-binding protein
Length = 664
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 454 GLLKGRHPLLTDIDLTIIPSKGLTLVEDARTDKNPKVG--KLLELARSDAY 502
G++ G H TD+DL + +K LT + A D+N K+ +L+ L + Y
Sbjct: 579 GMIIGEHSRETDLDLNPVKAKELTNIRSAGKDENVKLSPPRLMTLEEAIGY 629
>At5g05940 unklnown protein
Length = 611
Score = 31.2 bits (69), Expect = 1.7
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 112 SFKDNERLIKD---EKHYGRIRVNKREKDLEEELKYQRVCLSASDGGVVSLDWPVELDLE 168
S KD ++I+ + YG RV +E +LK +C++ SD ++ + D+E
Sbjct: 534 SSKDTNKIIEKGLPSRGYGVRRVLNNYLGMESKLK---ICVNPSDNADTAVINQISKDVE 590
Query: 169 EERGLDSTLLIVPGTPQ 185
EE+ +ST + G P+
Sbjct: 591 EEKKRNSTSVHQKGPPK 607
>At1g79410 unknown protein
Length = 515
Score = 30.4 bits (67), Expect = 3.0
Identities = 22/90 (24%), Positives = 39/90 (42%), Gaps = 2/90 (2%)
Query: 366 IKDIKIPVLFIQSDNGMV--PAFSVPRNLIAENPFTSLLLCSCLSSSVMDTDTSALSWCQ 423
++DIK+ + ++ N MV P F V L+ + S +L +CL +S
Sbjct: 342 VRDIKVNIYMSEALNAMVELPTFVVTPILLEQFSRRSSVLVNCLIGGASGVLCFVMSLYG 401
Query: 424 LVTVEVAI*LSIFYMCNFGMHMQWLAAVEL 453
+ A+ L F+ G ++ + VEL
Sbjct: 402 RTKIAFALELGSFFCARIGFNLMAIYLVEL 431
>At1g73100 putative protein
Length = 669
Score = 30.0 bits (66), Expect = 3.9
Identities = 29/130 (22%), Positives = 52/130 (39%), Gaps = 34/130 (26%)
Query: 438 MCNFGMHMQWLAAVELGLLKGRHPLLTDIDLTIIPSKGLTLVEDARTDKNPKVGKLLELA 497
MC G+HMQ +A ++ ++ A +D+ ++
Sbjct: 225 MCLVGLHMQTMAGIDY------------------------IISKAGSDEESLATSIVSSG 260
Query: 498 RSDAYNGYSIDPSEDLLEGSKNDAGLHFGPQQDVQQNFEQGDMSLQVKDGPLQQTSSSGR 557
R Y G + DP + G +A + +Q Q E+G+++L+ + + R
Sbjct: 261 R---YEGEAQDPESLIYSGQGGNADKN---RQASDQKLERGNLALENS----LRKGNGVR 310
Query: 558 ALVGEEDAAS 567
+ GEEDAAS
Sbjct: 311 VVRGEEDAAS 320
>At3g27910 hypothetical protein
Length = 294
Score = 29.3 bits (64), Expect = 6.6
Identities = 26/87 (29%), Positives = 38/87 (42%), Gaps = 10/87 (11%)
Query: 173 LDSTLLIVPGTPQGSMDDNIRVFVIDALKRGF--FPVVMNPRGCASSPITTPRL-----F 225
L + + G G M N VFVID L F P + PRGCA+ I ++ +
Sbjct: 45 LGHKIYVFGGCINGDMTSN--VFVIDCLHGTFQFLPSMRVPRGCAAFGIVDGKIYVIGGY 102
Query: 226 TAADSDDICTAITYINKARPWTTLMGV 252
ADS D + + K + W + G+
Sbjct: 103 NKADSLDNWVEVFDLEK-QTWESFSGL 128
>At1g10510 unknown protein
Length = 605
Score = 29.3 bits (64), Expect = 6.6
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 297 HVTDQKLTRGLINILQTNKALFQGKAKGX-DVGKALLAKSVRDFEEAISMVSYGFVDIED 355
HV D I++L +A G D G + LA+S++ EA++ V GF +I D
Sbjct: 498 HVADMLRYNNTISVLDL-------RANGLRDEGASCLARSLKVVNEALTSVDLGFNEIRD 550
Query: 356 FYTKASTRNMIKDIKIPVLFIQSDNGMVPAF 386
A + + + + V I N + F
Sbjct: 551 DGAFAIAQALKANEDVTVTSINLGNNFITKF 581
>At4g21700 hypothetical protein
Length = 962
Score = 28.9 bits (63), Expect = 8.6
Identities = 20/58 (34%), Positives = 31/58 (52%), Gaps = 7/58 (12%)
Query: 37 VPPPSPFENLFNTLISQC------SSVNSIDFIAPSLGFASGSALFFSRFKSSQNSDV 88
+ P P+ + N ++ + S+V S +A + F SG LFF+RF+ SQN DV
Sbjct: 51 IAPRIPYSDHCNHIVPESPIDPSPSAVFSHASLAFDVSFFSGGDLFFNRFQ-SQNGDV 107
>At3g19640 unknown protein
Length = 484
Score = 28.9 bits (63), Expect = 8.6
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 527 PQQDVQQNFEQGDMSLQVKDGPLQQTSSSGRALVGEEDAASVDSEHGHVMQTAQVVTNML 586
PQ D S +DG Q + + L+ + A S +S H T +TN L
Sbjct: 305 PQGDEDDRLPPEFASEANRDGRYLQANDAHELLMSTQSALSRNSRGTHTSSTRSAMTNKL 364
Query: 587 DV 588
DV
Sbjct: 365 DV 366
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,575,593
Number of Sequences: 26719
Number of extensions: 609300
Number of successful extensions: 1448
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 13
length of query: 602
length of database: 11,318,596
effective HSP length: 105
effective length of query: 497
effective length of database: 8,513,101
effective search space: 4231011197
effective search space used: 4231011197
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC124967.11